Chmp4b (charged multivesicular body protein 4B) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Chmp4b (charged multivesicular body protein 4B) Rattus norvegicus
Analyze
Symbol: Chmp4b
Name: charged multivesicular body protein 4B
RGD ID: 1309846
Description: Predicted to enable protein homodimerization activity. Predicted to be involved in several processes, including mitotic nuclear division; protein catabolic process; and regulation of cell cycle process. Predicted to be located in several cellular components, including bounding membrane of organelle; kinetochore microtubule; and midbody. Predicted to be part of ESCRT III complex and membrane coat. Human ortholog(s) of this gene implicated in cataract 31 multiple types. Orthologous to human CHMP4B (charged multivesicular body protein 4B); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2-methoxyethanol; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromatin modifying protein 4B; LOC100359642; LOC312254; rCG27912; rCG37275-like; RGD1309846; RGD1565889; similar to RIKEN cDNA 2010012F05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,631,054 - 163,671,569 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3163,631,054 - 163,671,569 (+)EnsemblGRCr8
mRatBN7.23143,170,859 - 143,211,376 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,170,902 - 143,210,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3147,038,366 - 147,078,867 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,655,650 - 155,696,272 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,395,185 - 153,435,681 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3161,730,657 - 161,771,160 (+)NCBI
Lyon_Normotensive3168,698,466 - 168,738,969 (+)NCBI
Lyon_Hypertensive3160,558,322 - 160,598,825 (+)NCBI
F344_StmMcwi3141,568,076 - 141,608,579 (+)NCBI
Rnor_6.03150,188,275 - 150,227,453 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,188,455 - 150,227,405 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.03156,559,302 - 156,597,243 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43145,138,905 - 145,176,471 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3141,903,054 - 141,940,133 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
endocytosis pathway  (IEA)

External Pathway Database Links

KEGG Pathway Endocytosis

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14505570   PMID:14519844   PMID:16730941   PMID:17683935   PMID:17701905   PMID:18209100   PMID:19056867   PMID:19523902   PMID:20458337   PMID:20616062   PMID:21310966   PMID:21975012  
PMID:22547407   PMID:22724069   PMID:23376485   PMID:23533145   PMID:24095276   PMID:24107264   PMID:24878737   PMID:25002582   PMID:25468996   PMID:25478783   PMID:26040712  


Genomics

Comparative Map Data
Chmp4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,631,054 - 163,671,569 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3163,631,054 - 163,671,569 (+)EnsemblGRCr8
mRatBN7.23143,170,859 - 143,211,376 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,170,902 - 143,210,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3147,038,366 - 147,078,867 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,655,650 - 155,696,272 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,395,185 - 153,435,681 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3161,730,657 - 161,771,160 (+)NCBI
Lyon_Normotensive3168,698,466 - 168,738,969 (+)NCBI
Lyon_Hypertensive3160,558,322 - 160,598,825 (+)NCBI
F344_StmMcwi3141,568,076 - 141,608,579 (+)NCBI
Rnor_6.03150,188,275 - 150,227,453 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,188,455 - 150,227,405 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.03156,559,302 - 156,597,243 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43145,138,905 - 145,176,471 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3141,903,054 - 141,940,133 (+)NCBICelera
Cytogenetic Map3q41NCBI
CHMP4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,811,348 - 33,854,366 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,811,253 - 33,854,366 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh372032,399,154 - 32,442,172 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,862,780 - 31,905,831 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342031,862,779 - 31,905,830NCBI
Celera2029,151,820 - 29,194,895 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,183,904 - 29,227,019 (+)NCBIHuRef
CHM1_12032,300,438 - 32,343,523 (+)NCBICHM1_1
T2T-CHM13v2.02035,537,705 - 35,580,724 (+)NCBIT2T-CHM13v2.0
Chmp4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,498,949 - 154,536,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,493,625 - 154,536,705 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382154,657,026 - 154,694,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,651,705 - 154,694,785 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv372154,482,762 - 154,520,519 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362154,348,505 - 154,386,224 (+)NCBIMGSCv36mm8
Celera2160,576,332 - 160,622,337 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.79NCBI
Chmp4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,478,698 - 27,526,575 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495542227,482,239 - 27,526,798 (-)NCBIChiLan1.0ChiLan1.0
CHMP4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,502,509 - 39,550,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,495,614 - 39,543,383 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,098,796 - 30,146,347 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,237,881 - 31,286,065 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,236,778 - 31,285,264 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CHMP4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,995,677 - 23,050,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,995,672 - 23,049,287 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2422,640,928 - 22,694,729 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02423,682,594 - 23,736,450 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2423,682,589 - 23,736,528 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,975,014 - 23,028,808 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,068,398 - 23,122,183 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,505,889 - 23,559,706 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chmp4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap15177,346,495 - 177,387,996 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024408640171,950,653 - 171,993,189 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,756,307 - 6,799,290 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,756,360 - 6,798,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,285,442 - 37,334,101 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11737,285,422 - 37,334,103 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,214,644 - 42,263,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHMP4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1239,750,211 - 39,794,605 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605088,741,182 - 88,785,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1238,093,909 - 38,139,932 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl238,093,829 - 38,140,367 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Chmp4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248425,454,616 - 5,505,454 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248425,450,900 - 5,505,418 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Chmp4b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15134,031,905 - 134,072,468 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Chmp4b
406 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:45
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000072917
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
RH128471  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23143,211,168 - 143,211,350 (+)MAPPERmRatBN7.2
Rnor_6.03150,227,976 - 150,228,157NCBIRnor6.0
Rnor_5.03156,598,901 - 156,599,082UniSTSRnor5.0
RGSC_v3.43145,179,643 - 145,179,824UniSTSRGSC3.4
Celera3141,942,265 - 141,942,446UniSTS
RH 3.4 Map31328.6UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
277 156 730 1591 4067 1008 1725 133 871 496 853 156 5394 2598 449 3980 38 1392 741 909 160 158

Sequence


Ensembl Acc Id: ENSRNOT00000072917   ⟹   ENSRNOP00000067294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3163,631,054 - 163,669,300 (+)Ensembl
mRatBN7.2 Ensembl3143,170,902 - 143,209,107 (+)Ensembl
Rnor_6.0 Ensembl3150,188,455 - 150,227,405 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100710   ⟹   ENSRNOP00000079776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3163,631,054 - 163,671,569 (+)Ensembl
mRatBN7.2 Ensembl3143,170,902 - 143,210,844 (+)Ensembl
RefSeq Acc Id: NM_001399657   ⟹   NP_001386586
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83163,631,054 - 163,671,569 (+)NCBI
mRatBN7.23143,170,859 - 143,211,376 (+)NCBI
Dahl_SR_JrHsd3161,730,657 - 161,771,160 (+)NCBI
Lyon_Normotensive3168,698,466 - 168,738,969 (+)NCBI
Lyon_Hypertensive3160,558,322 - 160,598,825 (+)NCBI
F344_StmMcwi3141,568,076 - 141,608,579 (+)NCBI
RefSeq Acc Id: XM_063282948   ⟹   XP_063139018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83163,660,619 - 163,671,569 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139018 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067294.3
  ENSRNOP00000079776
  ENSRNOP00000079776.1
Ensembl Acc Id: ENSRNOP00000067294   ⟸   ENSRNOT00000072917
Ensembl Acc Id: ENSRNOP00000079776   ⟸   ENSRNOT00000100710
RefSeq Acc Id: NP_001386586   ⟸   NM_001399657
- UniProtKB: A0A8I5ZP83 (UniProtKB/TrEMBL),   M0RCH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139018   ⟸   XM_063282948
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCH6-F1-model_v2 AlphaFold M0RCH6 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309846 AgrOrtholog
BioCyc Gene G2FUF-47163 BioCyc
Ensembl Genes ENSRNOG00000046585 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072917.4 UniProtKB/TrEMBL
  ENSRNOT00000100710 ENTREZGENE
  ENSRNOT00000100710.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1710 UniProtKB/TrEMBL
  ESAT-6-like UniProtKB/TrEMBL
InterPro Snf7_fam UniProtKB/TrEMBL
KEGG Report rno:100359642 UniProtKB/TrEMBL
NCBI Gene Chmp4b ENTREZGENE
PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 4B UniProtKB/TrEMBL
  PTHR22761 UniProtKB/TrEMBL
Pfam Snf7 UniProtKB/TrEMBL
PhenoGen Chmp4b PhenoGen
RatGTEx ENSRNOG00000046585 RatGTEx
UniProt A0A8I5ZP83 ENTREZGENE, UniProtKB/TrEMBL
  M0RCH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-19 Chmp4b  charged multivesicular body protein 4B  LOC100359642  rCG37275-like  Data merged from RGD:2325086 737654 APPROVED
2013-01-14 Chmp4b  charged multivesicular body protein 4B  Chmp4b  chromatin modifying protein 4B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-20 LOC100359642  rCG37275-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-10-01 Chmp4b  chromatin modifying protein 4B  RGD1309846  similar to RIKEN cDNA 2010012F05   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309846  similar to RIKEN cDNA 2010012F05   RGD1309846_predicted  similar to RIKEN cDNA 2010012F05 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 RGD1309846_predicted  similar to RIKEN cDNA 2010012F05 (predicted)  LOC683288  similar to Charged multivesicular body protein 4b (Chromatin-modifying protein 4b) (CHMP4b)  Data merged from RGD:1589195 1643240 APPROVED
2006-11-19 LOC683288  similar to Charged multivesicular body protein 4b (Chromatin-modifying protein 4b) (CHMP4b)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1309846_predicted  similar to RIKEN cDNA 2010012F05 (predicted)  LOC312254_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC312254_predicted  similar to RIKEN cDNA 2010012F05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL