Annotation (Toggle Detail/Summary View) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | anterior/posterior pattern specification | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:2660994 PMID:12701101 | anterior/posterior pattern specification | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | anterior/posterior pattern specification | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3579954 PMID:15930098 | brain development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | brain development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1918742 | RGD | MGI:MGI:5314314 PMID:22228099 | cardiac septum morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | cardiac septum morphogenesis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | cilium morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1859153 | RGD | MGI:MGI:3692156 PMID:16254602 | cilium morphogenesis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | cilium morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1926671|PMID:11062270 | RGD | MGI:MGI:1926671 PMID:11062270 | cilium morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:5317033|PMID:21289087 | RGD | MGI:MGI:5317033 PMID:21289087 | cilium morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:4940123 PMID:21285373 | determination of left/right symmetry | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1859153 | RGD | MGI:MGI:1855904 PMID:10804177 | determination of left/right symmetry | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | determination of left/right symmetry | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3577662 PMID:15755804 | dorsal/ventral pattern formation | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3577662 PMID:15755804 | dorsal/ventral pattern formation | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | dorsal/ventral pattern formation | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3579954 PMID:15930098 | embryonic digit morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:2660994 PMID:12701101 | embryonic digit morphogenesis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | embryonic digit morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | embryonic digit morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:3692156 PMID:16254602 | embryonic digit morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3579954 PMID:15930098 | embryonic digit morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3577662 PMID:15755804 | embryonic morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:98297 | RGD | MGI:MGI:3579954 PMID:15930098 | embryonic organ development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | embryonic organ development | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | epithelial cell morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:4940123 PMID:21285373 | epithelial cell morphogenesis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | eye development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1918742 | RGD | MGI:MGI:5314314 PMID:22228099 | forebrain morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | forebrain morphogenesis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | heart development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1918742 | RGD | MGI:MGI:5314314 PMID:22228099 | in utero embryonic development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | in utero embryonic development | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | limb development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1918742 | RGD | MGI:MGI:5314314 PMID:22228099 | lung development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | lung vasculature development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | lung vasculature development | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | nervous system development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | organ morphogenesis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:3045643 PMID:15226261 | palate development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1918742 | RGD | MGI:MGI:5314314 PMID:22228099 | positive regulation of proteolysis | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3579954 PMID:15930098 | positive regulation of proteolysis | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | protein localization | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:5314314 PMID:22228099 | protein processing | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1859153 | RGD | MGI:MGI:3692156 PMID:16254602 | protein processing | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | regulation of odontogenesis of dentin-containing tooth | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:2660994 PMID:12701101 | regulation of odontogenesis of dentin-containing tooth | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | smoothened signaling pathway | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3027342 | RGD | MGI:MGI:3579954 PMID:15930098 | smoothened signaling pathway | | ISO | RGD:1551338 | 1624291 | MGI:MGI:2157527 | RGD | MGI:MGI:5314314 PMID:22228099 | smoothened signaling pathway | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | smoothened signaling pathway | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | spinal cord dorsal/ventral patterning | | ISO | RGD:1551338 | 1624291 | MGI:MGI:1859153 | RGD | MGI:MGI:5052192 PMID:21761479 | telencephalon development | | ISO | RGD:1551338 | 1624291 | MGI:MGI:3823090 | RGD | MGI:MGI:3821634 PMID:19036983 | telencephalon development | | IEA | Ensembl:ENSMUSP00000113768 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Pathway Annotations| External Database Links | |
| Pathway Interaction Database | Hedgehog signaling events mediated by Gli proteins (PID:200172) |
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology Annotations
|
|
|
|
|
|
Molecular Pathway Annotations
|
| External Database Links | |
| Pathway Interaction Database | Hedgehog signaling events mediated by Gli proteins (PID:200172) |
References - curated
References - uncurated| PubMed | 21837759 |
RGD Disease Portals| Ift88 has been annotated in the following RGD Disease Portals. |
|||||
![]() |
| ||||
![]() |
| ||||
![]() |
| ||||
![]() |
| ||||
![]() |
| ||||
![]() |
| ||||
![]() |
| ||||
Comparative Map Data| Ift88 (Rattus norvegicus) |
|
|||||||||||||||||||||||||||||||||||
| IFT88 (Homo sapiens) |
|
|||||||||||||||||||||||||||||||||||
| Ift88 (Mus musculus) |
|
Position Markers| AW546000 |
|
QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| RefSeq Acc Id: | NM_001107266 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_001100736 | ||||||||||||||||||||
| Position: |
|
Protein Sequences| Protein RefSeqs | NP_001100736 | (Get FASTA) |
| GenBank Protein | EDM14349 | (Get FASTA) |
Strain Sequence Variants
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000009278 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000012988 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000012988 | ENTREZGENE, UniProtKB/TrEMBL |
| Entrez Gene | 305918 | ENTREZGENE |
| Gene3D-CATH | TPR-like_helical | UniProtKB/TrEMBL |
| HomoloGene Group ID | 4761 | ENTREZGENE |
| InterPro | TPR-1 | UniProtKB/TrEMBL |
| TPR-contain | UniProtKB/TrEMBL | |
| TPR-like_helical | UniProtKB/TrEMBL | |
| TPR_repeat | UniProtKB/TrEMBL | |
| KEGG Report | rno:305918 | ENTREZGENE, UniProtKB/TrEMBL |
| Pfam | TPR_1 | UniProtKB/TrEMBL |
| TPR_6 | UniProtKB/TrEMBL | |
| PROSITE | TPR | UniProtKB/TrEMBL |
| TPR_REGION | UniProtKB/TrEMBL | |
| SMART | TPR | UniProtKB/TrEMBL |
| UniGene | Rn.132110 | ENTREZGENE |
| UniProt | D4ACI9_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-04-30 | Ift88 | intraflagellar transport 88 homolog (Chlamydomonas) | Ift88_predicted | intraflagellar transport 88 homolog (Chlamydomonas) (predicted) | 'predicted' is removed | 24709 | APPROVED |
| 2006-03-30 | Ift88_predicted | intraflagellar transport 88 homolog (Chlamydomonas) (predicted) | Ttc10_predicted | tetratricopeptide repeat domain 10 (predicted) | Symbol and Name updated | 10779 | APPROVED |
| 2005-01-12 | Ttc10_predicted | tetratricopeptide repeat domain 10 (predicted) | Symbol and Name status set to approved | 1724 | APPROVED |
| More on Ift88 | |
![]() |
Entrez Gene |
![]() |
Ensembl Gene |
![]() | Genome Browser |
![]() |
NCBI Map Viewer |
![]() |
Vista |
![]() |
Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 1309717 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-05-28 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




