D8Rat3 Marker Search Result - Rat Genome Database

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Marker: D8Rat3

Symbol: D8Rat3
Previously known as: oxsts7432; R016-C02; R0016-C02; 
RGD ID: 35435
Expected Size: 174 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28120,994,228 - 120,994,388 (+)MAPPERmRatBN7.2
Rnor_6.08129,956,274 - 129,956,433NCBIRnor6.0
Rnor_5.08129,152,803 - 129,152,962UniSTSRnor5.0
RGSC_v3.48126,316,782 - 126,316,942RGDRGSC3.4
RGSC_v3.48126,316,783 - 126,316,942UniSTSRGSC3.4
RGSC_v3.18126,336,520 - 126,336,679RGD
Celera8120,131,165 - 120,131,324UniSTS
RH 3.4 Map81325.2UniSTS
RH 3.4 Map81325.2RGD
SHRSP x BN Map881.87UniSTS
SHRSP x BN Map881.87RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   BN-Lx/Cub   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Cm19  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGGGTTCCCTATTTGAGGTG
Reverse Primer CCCTCTGAAGTCACCATACCA
 
Template 
ACAAGCTTGCATGCTGCAGGTCGACTCTAGAGGATCCCCACCTAGAAATGTTGCTTACCAACAT
TTCCTGAGCCTGCAGTATGCTCCAGGTTCCCAGCTTGTGATGTCCATACTTTGTCATGGGTTCC
CTATTTGAGGTGAGTAGATGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTACATCTCCCCAAGAAAAGTTTTGTCACACAACATCAGGTCTTCTTGGACT
GTTCCTGAATTGTTACCTGGTATGGTGACTTCAGAGGGTGGTTGGGAAATGCAGGAGTTGGTGG
TACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCAC
AATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC
TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACTGTCGTGCCAGCT
GCATNAATGAATCGGCCACGCGCGGGGAGGGCGGTTTGGTATTGGNGCAGGGTGGTTNTNTTTC
ACATNNANGGNNCACTGNTGCCNTNACNNCTGGCCTGAGANTTGANNCGTCANNNNTGNCTACA
GCGANATCNNTTNTGTGTCNNACNGNANCTNNTNNAANNCC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307844Trak1trafficking kinesin protein 18120984445121139357Rat

Nucleotide Sequences
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 387454 UniSTS