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Gene: Lig3 (DNA ligase 3) Rattus norvegicus

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Symbol:

Lig3

Name:

DNA ligase 3

RGD ID:

1309875

Description:

Enables DNA ligase activity. Predicted to be involved in DNA metabolic process; mitochondrion organization; and negative regulation of mitochondrial DNA replication. Predicted to act upstream of or within double-strand break repair via nonhomologous end joining; mitochondrial DNA repair; and negative regulation of DNA recombination. Predicted to be located in nucleoplasm and synaptonemal complex. Predicted to be part of DNA ligase III-XRCC1 complex. Predicted to be active in mitochondrion and nucleus. Biomarker of middle cerebral artery infarction. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 20 and pancreatic cancer. Orthologous to human LIG3 (DNA ligase 3); PARTICIPATES IN nucleotide excision repair pathway; base excision repair pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-hydroperoxycyclophosphamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DNA ligase (ATP) 3; ligase III, DNA, ATP-dependent; LOC303369

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIG3 (DNA ligase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Lig3 (ligase III, DNA, ATP-dependent)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ADPRH (ADP-ribosylarginine hydrolase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LIG3 (DNA ligase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lig3 (ligase III, DNA, ATP-dependent)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lig3 (ligase III, DNA, ATP-dependent)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K07C5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder)
Drosophila melanogaster (fruit fly):	DNAlig3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y73B6BL.14	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	lig3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Candidate Gene For:

Bp301

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,215,371 - 68,238,705 (+)	NCBI		GRCr8
mRatBN7.2	10	67,717,808 - 67,741,141 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	72,337,877 - 72,361,210 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	71,843,252 - 71,866,586 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	67,305,075 - 67,328,397 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	70,134,734 - 70,158,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,000,287 - 71,021,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	71,013,909 - 71,035,020 (+)	NCBI
Celera	10	66,662,184 - 66,683,295 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	middle cerebral artery infarction		IEP		2302580	associated with transient cerebral ischemia and protein:increased expression:brain	RGD
Lig3	Rat	pancreatic cancer	resistance	ISO	LIG3 (Homo sapiens)	2317363	DNA:SNP:intron:rs 2074522 (human)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	Cardiac Arrhythmias		ISO	LIG3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cardiac arrhythmia	ClinVar
Lig3	Rat	genetic disease		ISO	LIG3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar
Lig3	Rat	mitochondrial DNA depletion syndrome 20		ISO	LIG3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Lig3	Rat	Neurodevelopmental Disorders		ISO	LIG3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	mitochondrial DNA depletion syndrome 20		ISO	LIG3 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of LIG3 mRNA	CTD	PMID:22079256
Lig3	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of LIG3 mRNA	CTD	PMID:17942748
Lig3	Rat	17beta-estradiol	increases expression	ISO	Lig3 (Mus musculus)	6480464	Estradiol results in increased expression of LIG3 mRNA	CTD	PMID:39298647
Lig3	Rat	1H-pyrazole	increases expression	ISO	Lig3 (Mus musculus)	6480464	pyrazole results in increased expression of LIG3 mRNA	CTD	PMID:17945193
Lig3	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of LIG3 mRNA	CTD	PMID:17942748
Lig3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of LIG3 mRNA	CTD	PMID:20106945 and PMID:21632981
Lig3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Lig3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of LIG3 mRNA	CTD	PMID:21570461
Lig3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of LIG3 mRNA	CTD	PMID:21215274 and PMID:33387578
Lig3	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of LIG3 mRNA	CTD	PMID:21346803
Lig3	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of LIG3 mRNA	CTD	PMID:28628672
Lig3	Rat	4-hydroperoxycyclophosphamide	decreases expression	EXP		6480464	perfosfamide results in decreased expression of LIG3 mRNA	CTD	PMID:11754170
Lig3	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Lig3 (Mus musculus)	6480464	Fenretinide results in increased expression of LIG3 mRNA	CTD	PMID:28973697
Lig3	Rat	acrylamide	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Acrylamide results in decreased expression of LIG3 mRNA	CTD	PMID:32763439
Lig3	Rat	aflatoxin B1	increases expression	ISO	Lig3 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of LIG3 mRNA	CTD	PMID:19770486
Lig3	Rat	aflatoxin B1	increases methylation	ISO	LIG3 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of LIG3 intron	CTD	PMID:30157460
Lig3	Rat	aristolochic acid A	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of LIG3 mRNA	CTD	PMID:33212167
Lig3	Rat	arsane	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Arsenic results in decreased expression of LIG3 mRNA and Arsenic results in decreased expression of LIG3 protein	CTD	PMID:21332098
Lig3	Rat	arsane	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of LIG3 mRNA more ...	CTD	PMID:21332098 and PMID:39836092
Lig3	Rat	arsenic atom	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Arsenic results in decreased expression of LIG3 mRNA and Arsenic results in decreased expression of LIG3 protein	CTD	PMID:21332098
Lig3	Rat	arsenic atom	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of LIG3 mRNA more ...	CTD	PMID:21332098 and PMID:39836092
Lig3	Rat	benzo[a]pyrene	affects methylation	ISO	LIG3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of LIG3 promoter	CTD	PMID:27901495
Lig3	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	7 more ...	CTD	PMID:34454013
Lig3	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Diethylhexyl Phthalate results in increased expression of LIG3 mRNA	CTD	PMID:33120273
Lig3	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of LIG3 mRNA	CTD	PMID:25181051
Lig3	Rat	bisphenol A	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	bisphenol A results in decreased expression of LIG3 mRNA and bisphenol A results in decreased expression of LIG3 protein	CTD	PMID:33376534 more ...
Lig3	Rat	bisphenol A	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	Melatonin inhibits the reaction [bisphenol A results in decreased expression of LIG3 mRNA]	CTD	PMID:36633214
Lig3	Rat	bisphenol A	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	Melatonin inhibits the reaction [bisphenol A results in decreased expression of LIG3 mRNA]	CTD	PMID:36633214
Lig3	Rat	bisphenol A	decreases expression	ISO	Lig3 (Mus musculus)	6480464	bisphenol A results in decreased expression of LIG3 mRNA	CTD	PMID:36633214
Lig3	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of LIG3 gene	CTD	PMID:28505145
Lig3	Rat	bisphenol F	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of LIG3 mRNA	CTD	PMID:28628672
Lig3	Rat	C60 fullerene	decreases expression	EXP		6480464	fullerene C60 results in decreased expression of LIG3 mRNA	CTD	PMID:19167457
Lig3	Rat	caffeine	affects phosphorylation	ISO	LIG3 (Homo sapiens)	6480464	Caffeine affects the phosphorylation of LIG3 protein	CTD	PMID:35688186
Lig3	Rat	carbon nanotube	increases expression	ISO	Lig3 (Mus musculus)	6480464	Nanotubes and Carbon results in increased expression of LIG3 mRNA	CTD	PMID:25620056
Lig3	Rat	CGP 52608	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to LIG3 gene]	CTD	PMID:28238834
Lig3	Rat	chlorpyrifos	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Chlorpyrifos results in increased expression of LIG3 mRNA	CTD	PMID:28887667
Lig3	Rat	chlorpyrifos	decreases expression	ISO	Lig3 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of LIG3 mRNA	CTD	PMID:37019170
Lig3	Rat	clofibrate	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of LIG3 mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of LIG3 mRNA]	CTD	PMID:17585979
Lig3	Rat	coumarin	increases phosphorylation	ISO	LIG3 (Homo sapiens)	6480464	coumarin results in increased phosphorylation of LIG3 protein	CTD	PMID:35688186
Lig3	Rat	curcumin	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	Curcumin inhibits the reaction [Arsenic results in decreased expression of LIG3 mRNA] and Curcumin inhibits the reaction [Arsenic results in decreased expression of LIG3 protein]	CTD	PMID:21332098
Lig3	Rat	cyclosporin A	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of LIG3 mRNA	CTD	PMID:20106945 and PMID:25562108
Lig3	Rat	dexamethasone	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of LIG3 mRNA	CTD	PMID:28628672
Lig3	Rat	Dibutyl phosphate	affects expression	ISO	LIG3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of LIG3 mRNA	CTD	PMID:37042841
Lig3	Rat	dibutyl phthalate	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Dibutyl Phthalate results in decreased expression of LIG3 mRNA	CTD	PMID:33120273
Lig3	Rat	dicrotophos	increases expression	ISO	LIG3 (Homo sapiens)	6480464	dicrotophos results in increased expression of LIG3 mRNA	CTD	PMID:28302478
Lig3	Rat	dorsomorphin	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LIG3 mRNA	CTD	PMID:27188386
Lig3	Rat	doxorubicin	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of LIG3 mRNA	CTD	PMID:29803840
Lig3	Rat	entinostat	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	entinostat results in decreased expression of LIG3 mRNA	CTD	PMID:27188386
Lig3	Rat	enzyme inhibitor	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of LIG3 protein	CTD	PMID:23301498
Lig3	Rat	epoxiconazole	increases expression	ISO	Lig3 (Mus musculus)	6480464	epoxiconazole results in increased expression of LIG3 mRNA	CTD	PMID:35436446
Lig3	Rat	ethyl methanesulfonate	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in decreased expression of LIG3 mRNA	CTD	PMID:23649840
Lig3	Rat	formaldehyde	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of LIG3 mRNA	CTD	PMID:23649840
Lig3	Rat	FR900359	affects phosphorylation	ISO	LIG3 (Homo sapiens)	6480464	FR900359 affects the phosphorylation of LIG3 protein	CTD	PMID:37730182
Lig3	Rat	genistein	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Genistein results in decreased expression of LIG3 mRNA	CTD	PMID:15257099
Lig3	Rat	glyphosate	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Glyphosate results in increased expression of LIG3 mRNA	CTD	PMID:31295307
Lig3	Rat	indometacin	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of LIG3 mRNA	CTD	PMID:28628672
Lig3	Rat	iron atom	decreases activity	ISO	LIG3 (Homo sapiens)	6480464	Iron results in decreased activity of LIG3 protein	CTD	PMID:20622253
Lig3	Rat	iron(0)	decreases activity	ISO	LIG3 (Homo sapiens)	6480464	Iron results in decreased activity of LIG3 protein	CTD	PMID:20622253
Lig3	Rat	ivermectin	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Ivermectin results in decreased expression of LIG3 protein	CTD	PMID:32959892
Lig3	Rat	melatonin	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	Melatonin inhibits the reaction [bisphenol A results in decreased expression of LIG3 mRNA]	CTD	PMID:36633214
Lig3	Rat	melatonin	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	Melatonin inhibits the reaction [bisphenol A results in decreased expression of LIG3 mRNA]	CTD	PMID:36633214
Lig3	Rat	methyl methanesulfonate	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of LIG3 mRNA	CTD	PMID:23649840
Lig3	Rat	Methylazoxymethanol acetate	affects expression	EXP		6480464	Methylazoxymethanol Acetate affects the expression of LIG3 mRNA	CTD	PMID:28349193
Lig3	Rat	miconazole	increases expression	EXP		6480464	Miconazole results in increased expression of LIG3 mRNA	CTD	PMID:22262564
Lig3	Rat	monocrotophos	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Monocrotophos results in increased expression of LIG3 mRNA	CTD	PMID:28887667
Lig3	Rat	N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine	increases expression	ISO	LIG3 (Homo sapiens)	6480464	N more ...	CTD	PMID:33645215
Lig3	Rat	paracetamol	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of LIG3 mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of LIG3 mRNA]	CTD	PMID:17585979
Lig3	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of LIG3 mRNA	CTD	PMID:33387578
Lig3	Rat	paracetamol	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of LIG3 mRNA	CTD	PMID:22230336
Lig3	Rat	paracetamol	affects expression	ISO	Lig3 (Mus musculus)	6480464	Acetaminophen affects the expression of LIG3 mRNA	CTD	PMID:17562736
Lig3	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	Lig3 (Mus musculus)	6480464	perfluorooctane sulfonic acid results in decreased expression of LIG3 protein	CTD	PMID:26178269
Lig3	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Lig3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of LIG3 mRNA	CTD	PMID:36331819
Lig3	Rat	pirinixic acid	decreases expression	ISO	Lig3 (Mus musculus)	6480464	pirinixic acid results in decreased expression of LIG3 mRNA	CTD	PMID:18445702
Lig3	Rat	potassium bromate	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	potassium bromate results in decreased expression of LIG3 mRNA	CTD	PMID:22539617
Lig3	Rat	potassium chromate	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	potassium chromate(VI) results in decreased expression of LIG3 mRNA	CTD	PMID:22079256
Lig3	Rat	potassium chromate	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of LIG3 mRNA	CTD	PMID:22079256
Lig3	Rat	rotenone	decreases expression	EXP		6480464	Rotenone results in decreased expression of LIG3 mRNA	CTD	PMID:19013527
Lig3	Rat	SB 431542	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LIG3 mRNA	CTD	PMID:27188386
Lig3	Rat	silver atom	decreases expression	ISO	Lig3 (Mus musculus)	6480464	Silver results in decreased expression of LIG3 mRNA	CTD	PMID:27131904
Lig3	Rat	silver(0)	decreases expression	ISO	Lig3 (Mus musculus)	6480464	Silver results in decreased expression of LIG3 mRNA	CTD	PMID:27131904
Lig3	Rat	sodium arsenite	decreases expression	ISO	Lig3 (Mus musculus)	6480464	sodium arsenite results in decreased expression of LIG3 mRNA	CTD	PMID:20643705
Lig3	Rat	sodium arsenite	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of LIG3 mRNA	CTD	PMID:38568856
Lig3	Rat	sodium arsenite	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of LIG3 mRNA and sodium arsenite inhibits the reaction [Zinc binds to LIG3 protein]	CTD	PMID:36087615 and PMID:39836092
Lig3	Rat	sodium arsenite	increases expression	ISO	Lig3 (Mus musculus)	6480464	sodium arsenite results in increased expression of LIG3 mRNA	CTD	PMID:20643705
Lig3	Rat	sodium dodecyl sulfate	increases expression	ISO	LIG3 (Homo sapiens)	6480464	Sodium Dodecyl Sulfate results in increased expression of LIG3 mRNA	CTD	PMID:31734321
Lig3	Rat	sodium fluoride	increases expression	ISO	Lig3 (Mus musculus)	6480464	Sodium Fluoride results in increased expression of LIG3 mRNA	CTD	PMID:27862939
Lig3	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of LIG3 mRNA	CTD	PMID:33387578
Lig3	Rat	trichostatin A	affects expression	ISO	LIG3 (Homo sapiens)	6480464	trichostatin A affects the expression of LIG3 mRNA	CTD	PMID:28542535
Lig3	Rat	trimellitic anhydride	increases expression	ISO	Lig3 (Mus musculus)	6480464	trimellitic anhydride results in increased expression of LIG3 mRNA	CTD	PMID:19042947
Lig3	Rat	valproic acid	decreases methylation	ISO	LIG3 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of LIG3 gene	CTD	PMID:29154799
Lig3	Rat	valproic acid	decreases expression	ISO	LIG3 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of LIG3 mRNA	CTD	PMID:23179753 and PMID:28001369
Lig3	Rat	valproic acid	affects expression	ISO	LIG3 (Homo sapiens)	6480464	Valproic Acid affects the expression of LIG3 mRNA	CTD	PMID:25979313
Lig3	Rat	valproic acid	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LIG3 mRNA	CTD	PMID:27188386
Lig3	Rat	zinc atom	affects binding	ISO	LIG3 (Homo sapiens)	6480464	Zinc binds to LIG3 protein	CTD	PMID:36087615
Lig3	Rat	zinc atom	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	sodium arsenite inhibits the reaction [Zinc binds to LIG3 protein]	CTD	PMID:36087615
Lig3	Rat	zinc(0)	affects binding	ISO	LIG3 (Homo sapiens)	6480464	Zinc binds to LIG3 protein	CTD	PMID:36087615
Lig3	Rat	zinc(0)	multiple interactions	ISO	LIG3 (Homo sapiens)	6480464	sodium arsenite inhibits the reaction [Zinc binds to LIG3 protein]	CTD	PMID:36087615

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	base-excision repair	involved_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:19589734	RGD	PMID:19589734
Lig3	Rat	base-excision repair	involved_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	base-excision repair	involved_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:24674627	RGD	PMID:24674627
Lig3	Rat	DNA biosynthetic process	involved_in	IEA	InterPro:IPR000977	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA damage response	involved_in	IEA	UniProtKB-KW:KW-0227	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	DNA recombination	involved_in	IEA	UniProtKB-KW:KW-0233	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	DNA recombination	involved_in	IEA	InterPro:IPR012308 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA repair	involved_in	IEA	InterPro:IPR012308 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA repair	involved_in	IEA	ARBA:ARBA00029008	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Lig3	Rat	DNA repair	involved_in	IEA	UniProtKB-KW:KW-0234	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	DNA replication	involved_in	IEA	UniProtKB-KW:KW-0235	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	double-strand break repair	involved_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:19589734	RGD	PMID:19589734
Lig3	Rat	double-strand break repair	involved_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	double-strand break repair	involved_in	IBA	MGI:109152 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lig3	Rat	double-strand break repair via alternative nonhomologous end joining	involved_in	ISO	Lig3 (Mus musculus)	1624291	PMID:21655080	RGD	PMID:21655080
Lig3	Rat	double-strand break repair via alternative nonhomologous end joining	involved_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-3	1624291	UniProtKB:P13010 and PMID:24837021	RGD	PMID:24837021
Lig3	Rat	double-strand break repair via nonhomologous end joining	acts_upstream_of_or_within	ISO	Lig3 (Mus musculus)	1624291	PMID:21655080	RGD	PMID:21655080
Lig3	Rat	lagging strand elongation	involved_in	IBA	PANTHER:PTN000048696 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lig3	Rat	mitochondrial DNA repair	involved_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:21390132	RGD	PMID:21390132
Lig3	Rat	mitochondrial DNA repair	involved_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	mitochondrial DNA repair	involved_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:24674627	RGD	PMID:24674627
Lig3	Rat	mitochondrial DNA repair	acts_upstream_of_or_within	ISO	Lig3 (Mus musculus)	1624291	PMID:21390131 and PMID:21390132	RGD	PMID:21390131 and PMID:21390132
Lig3	Rat	mitochondrion organization	involved_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:24837021	RGD	PMID:24837021
Lig3	Rat	mitochondrion organization	involved_in	ISO	Lig3 (Mus musculus)	1624291	PMID:21390131	RGD	PMID:21390131
Lig3	Rat	negative regulation of DNA recombination	acts_upstream_of_or_within	ISO	Lig3 (Mus musculus)	1624291	MGI:3629052 PMID:16648486	RGD	PMID:16648486
Lig3	Rat	negative regulation of mitochondrial DNA replication	involved_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:21878356	RGD	PMID:21878356
Lig3	Rat	negative regulation of mitochondrial DNA replication	involved_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	V(D)J recombination	NOT\|involved_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:9809069	RGD	PMID:9809069

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	condensed nuclear chromosome	located_in	ISO	Lig3 (Mus musculus)	1624291	PMID:9001252	RGD	PMID:9001252
Lig3	Rat	DNA ligase III-XRCC1 complex	part_of	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-3	1624291	PMID:8532526	RGD	PMID:8532526
Lig3	Rat	mitochondrion	located_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:10207110 and PMID:24837021	RGD	PMID:10207110 and PMID:24837021
Lig3	Rat	mitochondrion	is_active_in	ISO	LIG3 (Homo sapiens)	1624291	PMID:24674627	RGD	PMID:24674627
Lig3	Rat	mitochondrion	is_active_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	nucleoplasm	located_in	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	nucleoplasm	located_in	ISO	LIG3 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Lig3	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	nucleus	is_active_in	IBA	MGI:101789 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lig3	Rat	nucleus	located_in	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-3	1624291	PMID:10207110 and PMID:24837021	RGD	PMID:10207110 and PMID:24837021
Lig3	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Lig3	Rat	synaptonemal complex	located_in	ISO	Lig3 (Mus musculus)	1624291	PMID:9001252	RGD	PMID:9001252

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	ATP binding	enables	IEA	InterPro:IPR000977 and InterPro:IPR012310	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA binding	enables	IEA	InterPro:IPR001510 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA ligase (ATP) activity	enables	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-3	1624291	PMID:7565692	RGD	PMID:7565692
Lig3	Rat	DNA ligase (ATP) activity	enables	IEA	EC:6.5.1.1	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Lig3	Rat	DNA ligase (ATP) activity	enables	IBA	FB:FBgn0262619 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lig3	Rat	DNA ligase (ATP) activity	enables	IEA	InterPro:IPR000977 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA ligase (ATP) activity	enables	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:10207110	RGD	PMID:10207110
Lig3	Rat	DNA ligase activity		IDA		2302580		RGD
Lig3	Rat	DNA ligase activity	enables	ISO	LIG3 (Homo sapiens)	1624291	PMID:19589734 and PMID:9809069	RGD	PMID:19589734 and PMID:9809069
Lig3	Rat	DNA ligase activity	enables	IEA	UniProtKB:P49916 and ensembl:ENSP00000367787	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lig3	Rat	DNA ligase activity	enables	IEA	InterPro:IPR016059	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lig3	Rat	DNA ligase activity	enables	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-1	1624291	PMID:24674627	RGD	PMID:24674627
Lig3	Rat	ligase activity	enables	IEA	UniProtKB-KW:KW-0436	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	protein binding	enables	ISO	LIG3 (Homo sapiens) and UniProtKB:P49916-3	1624291	UniProtKB:P18887 and PMID:8532526	RGD	PMID:8532526
Lig3	Rat	protein binding	enables	ISO	LIG3 (Homo sapiens)	1624291	UniProtKB:P06746 more ...	RGD	PMID:15744309 more ...
Lig3	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lig3	Rat	zinc ion binding	enables	IEA	InterPro:IPR001510 and InterPro:IPR036957	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	nucleotide excision repair pathway		ISO	LIG3 (Homo sapiens)	7246935		RGD

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lig3	Rat	base excision repair pathway		IEA		6907045		KEGG	rno:03410

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	DNA polymerases and repair synthesis in NER in human cells.	Lehmann AR DNA Repair (Amst). 2011 Jul 15;10(7):730-3. doi: 10.1016/j.dnarep.2011.04.023. Epub 2011 May 20.
4.	DNA repair gene polymorphisms and risk of pancreatic cancer.	Li D, etal., Clin Cancer Res. 2009 Jan 15;15(2):740-6.
5.	Ischemic preconditioning induces XRCC1, DNA polymerase-beta, and DNA ligase III and correlates with enhanced base excision repair.	Li N, etal., DNA Repair (Amst). 2007 Sep 1;6(9):1297-306. Epub 2007 Apr 6.
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation

PMID:7565692	PMID:8532526	PMID:9001252	PMID:9809069	PMID:10207110	PMID:12477932	PMID:16648486	PMID:19589734	PMID:21390131	PMID:21390132	PMID:21655080	PMID:21878356
PMID:24674627	PMID:24837021	PMID:37315345

Lig3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,215,371 - 68,238,705 (+)	NCBI		GRCr8
mRatBN7.2	10	67,717,808 - 67,741,141 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	72,337,877 - 72,361,210 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	71,843,252 - 71,866,586 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	67,305,075 - 67,328,397 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	70,134,734 - 70,158,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,000,287 - 71,021,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	71,013,909 - 71,035,020 (+)	NCBI
Celera	10	66,662,184 - 66,683,295 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

LIG3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	34,980,512 - 35,010,872 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	34,980,512 - 35,009,743 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	33,307,531 - 33,336,762 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	30,331,651 - 30,356,201 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	30,331,696 - 30,355,936	NCBI
Celera	17	30,217,714 - 30,242,284 (+)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	29,493,447 - 29,518,012 (+)	NCBI		HuRef
CHM1_1	17	33,371,911 - 33,396,481 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	35,928,368 - 35,957,659 (+)	NCBI		T2T-CHM13v2.0

Lig3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	82,671,977 - 82,695,100 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	82,671,934 - 82,695,100 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	82,781,109 - 82,804,274 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	82,781,108 - 82,804,274 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	82,594,637 - 82,617,776 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	82,597,330 - 82,620,469 (+)	NCBI		MGSCv36	mm8
Celera	11	92,400,612 - 92,423,646 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	50.23	NCBI

Lig3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	9,696,054 - 9,715,637 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	9,696,050 - 9,716,154 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIG3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	29,456,509 - 29,487,762 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	31,342,056 - 31,367,159 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	21,776,483 - 21,805,706 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	22,073,487 - 22,097,754 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	22,074,046 - 22,095,220 (-)	Ensembl	panpan1.1		panPan2

LIG3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	38,346,275 - 38,366,634 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	38,346,199 - 38,366,193 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	37,569,261 - 37,590,027 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	39,158,185 - 39,178,954 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	39,155,826 - 39,178,934 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	37,940,790 - 37,961,563 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	38,226,708 - 38,247,470 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	38,314,196 - 38,334,891 (-)	NCBI		UU_Cfam_GSD_1.0

Lig3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	37,328,228 - 37,350,583 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	206,839 - 226,441 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	206,179 - 228,487 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIG3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	40,153,397 - 40,183,622 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	40,153,105 - 40,205,077 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	41,714,491 - 41,773,847 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIG3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	28,487,953 - 28,511,945 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	28,490,434 - 28,511,130 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	1,476,469 - 1,500,221 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lig3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624875	2,872,357 - 2,893,967 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624875	2,871,944 - 2,907,757 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lig3
43 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	453
Count of miRNA genes:	240
Interacting mature miRNAs:	280
Transcripts:	ENSRNOT00000055982
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	46989699	68663659	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	66941813	73452992	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	66978955	67750281	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	51663405	75085664	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66319447	67750281	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1579917	Bp282	Blood pressure QTL 282		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67400316	68164786	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66319447	67750281	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66319447	67750281	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66319447	68164786	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66319447	68164786	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66319447	68164786	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66319447	68164786	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66319447	67750281	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	65927233	82565079	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67502108	73579767	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66319447	67750281	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

D10Chm170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,720,219 - 67,720,443 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,137,131 - 70,137,354	NCBI	Rnor6.0
Rnor_5.0	10	69,767,838 - 69,768,061	UniSTS	Rnor5.0
RGSC_v3.4	10	71,002,650 - 71,002,873	UniSTS	RGSC3.4
Celera	10	66,664,547 - 66,664,770	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE109015

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,728,917 - 67,729,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,145,829 - 70,145,985	NCBI	Rnor6.0
Rnor_5.0	10	69,776,536 - 69,776,692	UniSTS	Rnor5.0
RGSC_v3.4	10	71,011,348 - 71,011,504	UniSTS	RGSC3.4
Celera	10	66,673,245 - 66,673,401	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH134877

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,716,622 - 67,716,808 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,133,534 - 70,133,719	NCBI	Rnor6.0
Rnor_5.0	10	69,764,241 - 69,764,426	UniSTS	Rnor5.0
RGSC_v3.4	10	70,999,053 - 70,999,238	UniSTS	RGSC3.4
Celera	10	66,660,950 - 66,661,135	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH141104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,739,005 - 67,739,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,155,916 - 70,156,122	NCBI	Rnor6.0
Rnor_5.0	10	69,786,623 - 69,786,829	UniSTS	Rnor5.0
RGSC_v3.4	10	71,021,435 - 71,021,641	UniSTS	RGSC3.4
Celera	10	66,683,332 - 66,683,538	UniSTS
Cytogenetic Map	10	q26	UniSTS

MARC_3929-3930:996679185:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,733,525 - 67,734,591 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,150,436 - 70,151,501	NCBI	Rnor6.0
Rnor_5.0	10	69,781,143 - 69,782,208	UniSTS	Rnor5.0
RGSC_v3.4	10	71,015,955 - 71,017,020	UniSTS	RGSC3.4
Celera	10	66,677,852 - 66,678,917	UniSTS
Cytogenetic Map	10	q26	UniSTS

Lig3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	68,224,677 - 68,225,542 (+)	Marker Load Pipeline
mRatBN7.2	10	67,727,114 - 67,727,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,144,026 - 70,144,890	NCBI	Rnor6.0
Rnor_5.0	10	69,774,733 - 69,775,597	UniSTS	Rnor5.0
RGSC_v3.4	10	71,009,545 - 71,010,409	UniSTS	RGSC3.4
Celera	10	66,671,442 - 66,672,306	UniSTS
Cytogenetic Map	10	q26	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001394035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055982 ⟹ ENSRNOP00000052836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,857 - 67,738,968 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,134,768 - 70,155,881 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076703 ⟹ ENSRNOP00000068142

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	70,153,427 - 70,154,512 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076739 ⟹ ENSRNOP00000068489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,812 - 67,741,142 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084076 ⟹ ENSRNOP00000069379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,136,855 - 70,156,772 (+)	Ensembl

RefSeq Acc Id:

NM_001394035 ⟹ NP_001380964

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,371 - 68,238,703 (+)	NCBI
mRatBN7.2	10	67,717,808 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

NM_001394036 ⟹ NP_001380965

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,371 - 68,238,703 (+)	NCBI
mRatBN7.2	10	67,717,808 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

NR_172067

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,371 - 68,238,703 (+)	NCBI
mRatBN7.2	10	67,717,808 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_008768020 ⟹ XP_008766242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,595 - 68,238,705 (+)	NCBI
mRatBN7.2	10	67,719,943 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,922 - 70,158,051 (+)	NCBI

Sequence:

show sequence

TGGCTCCTCCCCCGCCCGCCGCTCAGCCTGGGGGCACACCCTCCGTGACGTGGCGGCCCCCCGGGAGCCCACGGGAGGCCCGCGGCCCCCGGGACCCCAGGCGGGCACCCGGAAGGGCAGGATGCTGC
TGGCGGCAGAGTGGGCATCCTCAGGGGTCGAGGCCGGGCCGCTGCTGGTCCTCCCCGCCGCCTTGTGGCGCGGCGGGCTCAACCCGTGGGCAGAGCGGCGTGCTGCTTGCTCTTCGGGGGGGGGGGGG
GGCTCCAGAGCCTCTCCGCGCTGGTCTCCCCCTGTAGTTAGTTGTCGTATCCCGGGCTGGACGACACGGCACCCCACCCACCCTAATCTGCGGAAAGTTGAACTCCTATCCGCCCGGAGCACCTCCCC
AGCCCTGCCGGCCTTCACTCGCCTCTGTGATTCTTAACCGTTAGGGCTTATGTGACCCACTGAGTCTGCCAGTTACGGACTTCTCCTCCCCCAAATCGAATATTTTCAAAGTTTGGTATATATCCTCC
GGGAGTTCCGAACTCCACCTCTGGCCTGCCCTCGTATGCGTTGTACTTTTCCTAACCAATTCATGAAGTAGTTCTAATCTTTGGGGGGTGGGGGAGGAGTTGTTATCCTTTTGAGACGATCTTGGCTA
TGTATCCCTAGATAGACAGAAATTTACTAAGTAAACCAGACTGTCCAACTTCGAACGCACAGCAATGCCTTCTGAGGGATGAGATTACAGGAGAGAGCCACCATAACTAGCTTAGTCCTGTTTTTTAA
ACTAAAACTGGGGCCGGGTATAGTAGCACATGCCTTTAATCCGTGCACTCAGAACAGTAGTTTGCTCTGCATCGTGACTCCCAGGACAGCCAGGGCTACATAGAAAGATCCTGTCTCAAAAGGCGAAA
AATAAACAGACAATAAACTGGTCATGCTTGGTGGCTCACACCTACCATCCCAGCACTGGAGGTGGGAGGATCAGCTAGCTAGGGTCAACCTTGTTGGAGGAAACCGAGTCACCTGGTATCTGCCCCAC
TTTCCTGCCCCCTTTTAGCTGGATAGACTTGGCTTCCCAACCCCTTCTTAAATAGTATACCTGCTGTGTTCTGCACCATGTCGCACAGCAGTGATGGAAGCCAGCTTGCTGTTCTGACACAATATTCA
TTTTACTTCTCAGCAGAGTGGGGACTAAAAATAGTTTCCAGTAAATTGGAAATTAAAACTGTAAAGCCACTTAAATAATTATAAATATAAGAGTAAGAATAATAATTTTCCACTTGAATTGATTCATC
ACTTGGTTAGATCTTACAGTCCGGTTATTTCAACCTCCCTGATTCAGGTAGCCGAATTAAGCAAGGGGATTGCTTATTCTGTTTCTAAGGACTTTCCTCTTAGCACAACTGACTACTCCTTGAATTAG
GTCCTACTGTGAGCTGCAGTTGACAGATGAAATAGGAACAGAGAGGTAAAGTAACTGAACCAAGGTCACACAGCTGATAAATGGCTAAGGTTTTGAACTCAGGCAGTCAATCTGATTATAGACTCTGA
TTAGTTGCCTCGAAAAGGGGGCCTTCTTCTGAAATCCCAAAACTGTTACAGTGGCTGATTTGTTTTCTGAAAGTGGCTCATGTGTTATGTTTCACAGGAAAATTTCATAAACATAATGTAATTTTTCT
TGGTTTTTAAGACAGCTTCAGGATCCTGGTAATATTTAAAGGTCACCATCGATTATGAGTGCCTTTACAGTCTCTACAATGTTGACGAGGCATGCCCCTTTGGAAACTGGTTTTTCCTGTATTGGAAC
TCTGGGTGGTAAATATTTAATGCATTGGGAAGTGCTTGGTTAATCAAGTGCTCTGTCTGAGATTCTAGCTGTTAAGAAGTTGGAAGCCTGGATCCCTCATGTCTGTCTGTCTGTCTGTCTGTTTCCAC
CCTTTTATGCAGCTATATGACTTTGGCCTTTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCTTGGCAGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCCTGCCATAAGACAGTTCAGCC
AGTGGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTATCTTTCCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTTCGTGGTCAGGGTCGCATGTG
GGACTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTGTGTGGACTATGCCAAGCGGGGCACAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGCGTATGCCGCATTGGCAAAGT
GGTACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGTGGTACCACATTAAGTGCATGTTTGAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGAAGACCTCACAGAGCTGGAAG
GCTGGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAGCACATTGCAGACCTGTCTTCCAAGACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTAAGCTGACAACCACTGGCCAA
GTGACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAATCCCCGGAAATTTTCTGGCTTTTCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTCTGTC
CGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTACGAGAATTCCGGAAGCTGTGTGCCATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGATCATCCACGACTTCTTGCAGAAAG
GCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACAGTGAAGCTGCTGCTGCCTGGTGTCATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGAAACTGTTCAGCCGAATTTTTAAC
TGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGACGTGTCCGAGACGATCAGAGTCTTCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGGTGGA
TGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCAGGACATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTATCCGGCTGATCAAACACGATCTGA
AGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGACCCCAATGCTTATGAAGCCTTCAAAGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGAGAAG
GACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATTGATGACACCTGTGCAACCCATGCTGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGA
GATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGGGAGACCATTTCAGCTACTTCAGCCGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTTTAAGGACTATATTCCCAAAGCGT
TTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTCCTGATTGATAACAACACAGGCAAACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTGCTTTCCAGGATGCTAATGTCTGC
CTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTTGATGGACAGGCCTCTCTGTGAGCGACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAACCGGATCATGTTCTCAGAAATGAA
GCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACCGGGTGATCCGAGAGGGCCTGGAAGGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGGAAAACGACACTGGCTGAAAGTTA
AGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCCTCATGGGCTGCTATGACCCCGAC
AGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCATGACGATGCCACACTTGCCCGCCTGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCTAGCAAGATACCCAGCTGGCTGAA
GATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAGATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGCTGATGGGATCTCCATCCGATTTC
CTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACTAACCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGGGAGC
TCCACTACTGGAGGCAGCAATGGTGAGAATGAGGGCACTGCTGGGTCTACTGTGCCCCGCAAGGGCCCCAAGGGACCCCCCAGTAAGTCCTCTGCCAGTGCCAAGAAGACTGAACAGAAGCTGAATGA
TCCCAGTAGCAGAGGTGGAGAGAAGCTGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGATGAAGAGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGGCGCTGTTGGATGTCTTCACTGGGGTGA
GGCTCTACTTGCCACCTTCTACACCAGACTTCAGACGGCTCAAACGTTACTTTGTGGCATTCAACGGGGACCTGGTACAGGAATTTGACATGGCCTCAGCCACACATGTGCTGGGTAACAGGGACAAG
AACACTGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGCATGCATCCGGAAACGGAGGCTGGTAGCTCCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACCGATACACGAGGCTCAGCCTGACG
GGTAGAGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCCTCCGCCTCTTTATGGTCTCTTCTGGATCGGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTGGATCTTCCCAGGTGCTAGTTTTG
TCTGAGGTGCTGATGACCAACTTAAACCCTCAATCACACTAGGCACAGCACTCTGCCACTGAACTACAGCTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAATTTGAA
CAAGAATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGTTCCTCAGTGACGAAGGAGTGCTGAGCGGAATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATCTTAAAGGTGTATTTAAACTGTTC
TCAAACACTTCTTATACCTGGCAAAACCTTTATTATGTCTGGTCCAAACCCCCATGTGAAAGAACAAAGTGGTCTCCAAATTTCCAGGTCATTGCCTGGAGGGAGAGCTGACATCTACAGAAAAGTGT
CCTCCTTGGAGACAGAGGCTCCTTGAAGGTGAATTTGCCTCATCAAAATCTGACTGCTCTCAGCAGCACAGGTCCATAGCTGGGAAAATCTACATACCCTGCCTACCAAGGTTGGCTTCTATGCCATG
TGTGGCAGATGTCCTTGAAGGGGAAAGAAAATGATTTCTGTGTATAACTGCACACAAGGGGTATTTTGCCACAGTGGAAGTGTCCTAAACTAGCCTTATCTGATTGTCAAGCCTTGAAATGGGATTAG
TGTGACTGGCGAAAGCCATAAACATTTCAAGACATCTTCAAATGGTCTCAAGTTACCGGTGACATCACATCATCTGAGTATCAGTTCCTCAAGAGGAATGGGCAGTCACTGTTGCCAAATCACTGGGC
AGCGGCCAGTAACCTCAGACACCTTGTTGAAGGCATGCAACACGGAGCCTGGTAAAGATATTATCCAGGAGGAGGCCTAGCTTACACCTCACTTGTTAAAAGTTCACATTTGGGTCTAAGCATGGAAC
TGTAGTAGACCGCCTTCTTTGTCTATGTTGTGCCACCTCTTGAAGAGCAGCTCTGTTCTTATTAACTCAGCAGGCTTTTCTATCCACCTGTGAGCTAGGTTAATATGATGGGACCTCTTAAACACTTA
TGTGAGCCTCTAAGATACAGACCTACCACCCCACGTAACTCCTAAAGTAACATCCCACTAGGAGGCTGCTTACTAGTCTGGCTGTCTTTCTCCTATTTTATAGATGCTCTGACTAGGGTAGAGTAAGC
GACATTCAGTCTGGTAAGTTAAACTTTTTTTATTCTAGCCTCAAGGCGGAAGCTGCTTTGTGCTTTGAACACTTGGCTTCCTTGCCCAAGCAGCTTGGTAGAGCATCAAAGATGACTTCCCCATCACA
CAGGGCTGGAAGTTTGTCCCTTTGTCCCTTTAATGCCTTACTATATAGTCACTTCAGCTTGCTGTCTGTACATTTCCCTTTGCAGAGGTTAGGCTGTATGTAGACCTTTGTATCTTTCCTGTCTTTCC
ACACAAGCCTAAGCATGACCTGAAACCCCCATCCCCCAAGGCTGGAAACATGCTCTCTGTGGCTTTTGTTTACACAATGCCAGTTGATGGCAGGCAGTGCTCATTATGGGATGCTCAACAGATCCGGC
CATCAATAAGAGACAGGGTAGAATCCTTTCATCCAGCTCTCCCATAGGTGATACACTCCACTCCACTCCCCTTAGGCACCTGGTCAGGTAGGTGGGTACAGGCCTGTGTCTACTCTGCAGTCTGCTCT
TTAGGCTGGGCCAACCTTGGAGCCACACTTGTCTGTATCCAAACGCTACTGTCAGTGTTTTGGGGTAACTTGAAAACTTAACTGCCTACCTAGCTGTCTTGAGATTCCTTTCACTTAGCTCTTGAAGG
CCCCTCTACAGTGGGACTGTAATAACTTCACACGGTGCTTGCCGTTTGCTCTTGAATCACCCTTACACTTAGCTCCACGAGTAACTGTTCCACAATCCCATGTACTCTTGTGGATCTTGGCCAGGTCA
CAACACAGAGCATGTGGCCTGATGTCTGCCCACGTTTACAAGTGTTTTGGGAACCTCTGGTATCATCCCCCCACACCAGATGGAACAGGCATCTGTATTTAAACTTTATTACAAAATTATAAAGCAGA
GCTCTGTAACAAAAAATACACATTTGGGTATGCTTACCACCCAGGTGAGAGAATCAATGTAAGCCACTTGGAGCTATACATTTATATCCAAGAGATCTCAAATGTGTACAACATAGACTATTAATTCC
TTTACAGCTTGTTAGTTTAGAACCGGCTATTCCAACCAGTCAGCATCTTTGAAAACTAAGTCTCAACTAAAATCTTGGCGCAATCGGCAAAGTCCACAGAATAATTGGAAGGATTAGGTGTTTCCACA
TTAATTAAGACCAAGGATCCGTGAAGAACAGAAAAAGGGGCTCAGGTATTTAAAAAAAAAAATCAGTTTTTCTACCTGAGATATTAACTGGAATGAGTTCCAACTTCCATTTGGTTTAACAATAAAAA
GGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_008768021 ⟹ XP_008766243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,602 - 68,238,705 (+)	NCBI
mRatBN7.2	10	67,719,943 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,925 - 70,158,051 (+)	NCBI

Sequence:

show sequence

CTCCTCCCCCGCCCGCCGCTCAGCCTGGGGGCACACCCTCCGTGACGTGGCGGCCCCCCGGGAG
CCCACGGGAGGCCCGCGGCCCCCGGGACCCCAGGCGGGCACCCGGAAGGGCAGGATGCTGCTGGCGGCAGAGTGGGCATCCTCAGGGGTCGAGGCCGGGCCGCTGCTGGTCCTCCCCGCCGCCTTGTG
GCGCGGCGGGCTCAACCCGTGGGCAGAGCGGCGTGCTGCTTGCTCTTCGGGGGGGGGGGGGGGCTCCAGAGCCTCTCCGCGCTGGTCTCCCCCTGTAGTTAGTTGTCGTATCCCGGGCTGGACGACAC
GGCACCCCACCCACCCTAATCTGCGGAAAGTTGAACTCCTATCCGCCCGGAGCACCTCCCCAGCCCTGCCGGCCTTCACTCGCCTCTGTGATTCTTAACCGTTAGGGCTTATGTGACCCACTGAGTCT
GCCAGTTACGGACTTCTCCTCCCCCAAATCGAATATTTTCAAAGTTTGGTATATATCCTCCGGGAGTTCCGAACTCCACCTCTGGCCTGCCCTCGTATGCGTTGTACTTTTCCTAACCAATTCATGAA
GTAGTTCTAATCTTTGGGGGGTGGGGGAGGAGTTGTTATCCTTTTGAGACGATCTTGGCTATGTATCCCTAGATAGACAGAAATTTACTAAGTAAACCAGACTGTCCAACTTCGAACGCACAGCAATG
CCTTCTGAGGGATGAGATTACAGGAGAGAGCCACCATAACTAGCTTAGTCCTGTTTTTTAAACTAAAACTGGGGCCGGGTATAGTAGCACATGCCTTTAATCCGTGCACTCAGAACAGTAGTTTGCTC
TGCATCGTGACTCCCAGGACAGCCAGGGCTACATAGAAAGATCCTGTCTCAAAAGGCGAAAAATAAACAGACAATAAACTGGTCATGCTTGGTGGCTCACACCTACCATCCCAGCACTGGAGGTGGGA
GGATCAGCTAGCTAGGGTCAACCTTGTTGGAGGAAACCGAGTCACCTGGTATCTGCCCCACTTTCCTGCCCCCTTTTAGCTGGATAGACTTGGCTTCCCAACCCCTTCTTAAATAGTATACCTGCTGT
GTTCTGCACCATGTCGCACAGCAGTGATGGAAGCCAGCTTGCTGTTCTGACACAATATTCATTTTACTTCTCAGCAGAGTGGGGACTAAAAATAGTTTCCAGTAAATTGGAAATTAAAACTGTAAAGC
CACTTAAATAATTATAAATATAAGAGTAAGAATAATAATTTTCCACTTGAATTGATTCATCACTTGGTTAGATCTTACAGTCCGGTTATTTCAACCTCCCTGATTCAGGTAGCCGAATTAAGCAAGGG
GATTGCTTATTCTGTTTCTAAGGACTTTCCTCTTAGCACAACTGACTACTCCTTGAATTAGGTCCTACTGTGAGCTGCAGTTGACAGATGAAATAGGAACAGAGAGGTAAAGTAACTGAACCAAGGTC
ACACAGCTGATAAATGGCTAAGGTTTTGAACTCAGGCAGTCAATCTGATTATAGACTCTGATTAGTTGCCTCGAAAAGGGGGCCTTCTTCTGAAATCCCAAAACTGTTACAGTGGCTGATTTGTTTTC
TGAAAGTGGCTCATGTGTTATGTTTCACAGGAAAATTTCATAAACATAATGTAATTTTTCTTGGTTTTTAAGACAGCTTCAGGATCCTGGTAATATTTAAAGGTCACCATCGATTATGAGTGCCTTTA
CAGTCTCTACAATGTTGACGAGGCATGCCCCTTTGGAAACTGGTTTTTCCTGTATTGGAACTCTGGGTGGTAAATATTTAATGCATTGGGAAGTGCTTGGTTAATCAAGTGCTCTGTCTGAGATTCTA
GCTGTTAAGAAGTTGGAAGCCTGGATCCCTCATGTCTGTCTGTCTGTCTGTCTGTTTCCACCCTTTTATGCAGCTATATGACTTTGGCCTTTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCTTGGC
AGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCCTGCCATAAGACAGTTCAGCCAGTGGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTATCTTT
CCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTTCGTGGTCAGGGTCGCATGTGGGACTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTGTGTGGACTATGCCAAGCGGGGCA
CAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGCGTATGCCGCATTGGCAAAGTGGTACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGTGGTACCACATTAAGTGCATGTTT
GAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGAAGACCTCACAGAGCTGGAAGGCTGGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAGCACATTGCAGACCTGTCTTCCAA
GACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTAAGCTGACAACCACTGGCCAAGTGACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAATCCCCGGAAATTTTCTGGCTTTT
CAGCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTCTGTCCGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTACGAGAATTCCGGAAGCTGTGTGCC
ATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGATCATCCACGACTTCTTGCAGAAAGGCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACAGTGAAGCTGCTGCTGCCTGGTGT
CATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGAAACTGTTCAGCCGAATTTTTAACTGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGACGTGTCCGAGACGATCAGAGTCT
TCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGGTGGATGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCAGGAC
ATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTATCCGGCTGATCAAACACGATCTGAAGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGACCCCAATGCTTATGAAGCCTTCAA
AGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGAGAAGGACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATTGATGACACCTGTGCAACCCATGC
TGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGAGATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGGGAGACCATTTCAGCTACTTCAGC
CGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTTTAAGGACTATATTCCCAAAGCGTTTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTCCTGATTGATAACAACACAGGCAA
ACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTGCTTTCCAGGATGCTAATGTCTGCCTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTTGATGGACAGGCCTCTCTGTGAGC
GACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAACCGGATCATGTTCTCAGAAATGAAGCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACCGGGTGATCCGAGAGGGCCTGGAA
GGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGGAAAACGACACTGGCTGAAAGTTAAGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTT
CTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCCTCATGGGCTGCTATGACCCCGACAGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCATGACGATGCCACACTTGCCCGCC
TGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCTAGCAAGATACCCAGCTGGCTGAAGATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAG
ATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGCTGATGGGATCTCCATCCGATTTCCTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACTAACCTCCCCCAACTCAA
GGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGGGAGCTCCACTACTGGAGGCAGCAATGGAGAGAAGCTGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGA
TGAAGAGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGGCGCTGTTGGATGTCTTCACTGGGGTGAGGCTCTACTTGCCACCTTCTACACCAGACTTCAGACGGCTCAAACGTTACTTTGTGGCA
TTCAACGGGGACCTGGTACAGGAATTTGACATGGCCTCAGCCACACATGTGCTGGGTAACAGGGACAAGAACACTGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGCATGCATCCGGAAACGGAG
GCTGGTAGCTCCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACCGATACACGAGGCTCAGCCTGACGGGTAGAGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCCTCCGCCTCTTTATGGTCT
CTTCTGGATCGGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTGGATCTTCCCAGGTGCTAGTTTTGTCTGAGGTGCTGATGACCAACTTAAACCCTCAATCACACTAGGCACAGCACTCTGCCAC
TGAACTACAGCTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAATTTGAACAAGAATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGTTCCTCAGTGACGAAGGAG
TGCTGAGCGGAATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATCTTAAAGGTGTATTTAAACTGTTCTCAAACACTTCTTATACCTGGCAAAACCTTTATTATGTCTGGTCCAAACCCCCATGTGA
AAGAACAAAGTGGTCTCCAAATTTCCAGGTCATTGCCTGGAGGGAGAGCTGACATCTACAGAAAAGTGTCCTCCTTGGAGACAGAGGCTCCTTGAAGGTGAATTTGCCTCATCAAAATCTGACTGCTC
TCAGCAGCACAGGTCCATAGCTGGGAAAATCTACATACCCTGCCTACCAAGGTTGGCTTCTATGCCATGTGTGGCAGATGTCCTTGAAGGGGAAAGAAAATGATTTCTGTGTATAACTGCACACAAGG
GGTATTTTGCCACAGTGGAAGTGTCCTAAACTAGCCTTATCTGATTGTCAAGCCTTGAAATGGGATTAGTGTGACTGGCGAAAGCCATAAACATTTCAAGACATCTTCAAATGGTCTCAAGTTACCGG
TGACATCACATCATCTGAGTATCAGTTCCTCAAGAGGAATGGGCAGTCACTGTTGCCAAATCACTGGGCAGCGGCCAGTAACCTCAGACACCTTGTTGAAGGCATGCAACACGGAGCCTGGTAAAGAT
ATTATCCAGGAGGAGGCCTAGCTTACACCTCACTTGTTAAAAGTTCACATTTGGGTCTAAGCATGGAACTGTAGTAGACCGCCTTCTTTGTCTATGTTGTGCCACCTCTTGAAGAGCAGCTCTGTTCT
TATTAACTCAGCAGGCTTTTCTATCCACCTGTGAGCTAGGTTAATATGATGGGACCTCTTAAACACTTATGTGAGCCTCTAAGATACAGACCTACCACCCCACGTAACTCCTAAAGTAACATCCCACT
AGGAGGCTGCTTACTAGTCTGGCTGTCTTTCTCCTATTTTATAGATGCTCTGACTAGGGTAGAGTAAGCGACATTCAGTCTGGTAAGTTAAACTTTTTTTATTCTAGCCTCAAGGCGGAAGCTGCTTT
GTGCTTTGAACACTTGGCTTCCTTGCCCAAGCAGCTTGGTAGAGCATCAAAGATGACTTCCCCATCACACAGGGCTGGAAGTTTGTCCCTTTGTCCCTTTAATGCCTTACTATATAGTCACTTCAGCT
TGCTGTCTGTACATTTCCCTTTGCAGAGGTTAGGCTGTATGTAGACCTTTGTATCTTTCCTGTCTTTCCACACAAGCCTAAGCATGACCTGAAACCCCCATCCCCCAAGGCTGGAAACATGCTCTCTG
TGGCTTTTGTTTACACAATGCCAGTTGATGGCAGGCAGTGCTCATTATGGGATGCTCAACAGATCCGGCCATCAATAAGAGACAGGGTAGAATCCTTTCATCCAGCTCTCCCATAGGTGATACACTCC
ACTCCACTCCCCTTAGGCACCTGGTCAGGTAGGTGGGTACAGGCCTGTGTCTACTCTGCAGTCTGCTCTTTAGGCTGGGCCAACCTTGGAGCCACACTTGTCTGTATCCAAACGCTACTGTCAGTGTT
TTGGGGTAACTTGAAAACTTAACTGCCTACCTAGCTGTCTTGAGATTCCTTTCACTTAGCTCTTGAAGGCCCCTCTACAGTGGGACTGTAATAACTTCACACGGTGCTTGCCGTTTGCTCTTGAATCA
CCCTTACACTTAGCTCCACGAGTAACTGTTCCACAATCCCATGTACTCTTGTGGATCTTGGCCAGGTCACAACACAGAGCATGTGGCCTGATGTCTGCCCACGTTTACAAGTGTTTTGGGAACCTCTG
GTATCATCCCCCCACACCAGATGGAACAGGCATCTGTATTTAAACTTTATTACAAAATTATAAAGCAGAGCTCTGTAACAAAAAATACACATTTGGGTATGCTTACCACCCAGGTGAGAGAATCAATG
TAAGCCACTTGGAGCTATACATTTATATCCAAGAGATCTCAAATGTGTACAACATAGACTATTAATTCCTTTACAGCTTGTTAGTTTAGAACCGGCTATTCCAACCAGTCAGCATCTTTGAAAACTAA
GTCTCAACTAAAATCTTGGCGCAATCGGCAAAGTCCACAGAATAATTGGAAGGATTAGGTGTTTCCACATTAATTAAGACCAAGGATCCGTGAAGAACAGAAAAAGGGGCTCAGGTATTTAAAAAAAA
AAATCAGTTTTTCTACCTGAGATATTAACTGGAATGAGTTCCAACTTCCATTTGGTTTAACAATAAAAAGGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_039086028 ⟹ XP_038941956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,217,248 - 68,238,705 (+)	NCBI
mRatBN7.2	10	67,719,677 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086029 ⟹ XP_038941957

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,885 - 68,238,705 (+)	NCBI
mRatBN7.2	10	67,718,320 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086030 ⟹ XP_038941958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,886 - 68,238,705 (+)	NCBI
mRatBN7.2	10	67,718,537 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086031 ⟹ XP_038941959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,593 - 68,230,798 (+)	NCBI
mRatBN7.2	10	67,719,943 - 67,733,236 (+)	NCBI

RefSeq Acc Id:

XM_063269079 ⟹ XP_063125149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,604 - 68,238,705 (+)	NCBI

RefSeq Acc Id:

XM_063269080 ⟹ XP_063125150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,216,888 - 68,238,705 (+)	NCBI

RefSeq Acc Id:

XM_063269081 ⟹ XP_063125151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,601 - 68,235,180 (+)	NCBI

RefSeq Acc Id:

XM_063269082 ⟹ XP_063125152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,217,510 - 68,238,705 (+)	NCBI

RefSeq Acc Id:

XM_063269083 ⟹ XP_063125153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,215,600 - 68,235,180 (+)	NCBI


Protein RefSeqs	NP_001380964	(Get FASTA)	NCBI Sequence Viewer
	NP_001380965	(Get FASTA)	NCBI Sequence Viewer
	XP_008766242	(Get FASTA)	NCBI Sequence Viewer
	XP_008766243	(Get FASTA)	NCBI Sequence Viewer
	XP_038941956	(Get FASTA)	NCBI Sequence Viewer
	XP_038941957	(Get FASTA)	NCBI Sequence Viewer
	XP_038941958	(Get FASTA)	NCBI Sequence Viewer
	XP_038941959	(Get FASTA)	NCBI Sequence Viewer
	XP_063125149	(Get FASTA)	NCBI Sequence Viewer
	XP_063125150	(Get FASTA)	NCBI Sequence Viewer
	XP_063125151	(Get FASTA)	NCBI Sequence Viewer
	XP_063125152	(Get FASTA)	NCBI Sequence Viewer
	XP_063125153	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052836
	ENSRNOP00000052836.3
	ENSRNOP00000068489
	ENSRNOP00000068489.2
	ENSRNOP00000069379
	ENSRNOP00000069379.2

RefSeq Acc Id:	XP_008766243 ⟸ XM_008768021
- Peptide Label:	isoform X4
- UniProtKB:	A0A096MKE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGHLRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAATPKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTSLSASKC DPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLL HLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYD GERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTK ASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKI YYPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAVVAGDEGSSTTGGSNGEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLY LPPSTPDFRRLKRYFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC hide sequence

RefSeq Acc Id:	XP_008766242 ⟸ XM_008768020
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JV76 (UniProtKB/TrEMBL), A6HHE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGHLRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAATPKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAKPNNSEQDPSSPAPKTSLSASKCD PKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLLH LSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDG ERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKA SDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIY YPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSRG GEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC hide sequence

Ensembl Acc Id:

ENSRNOP00000052836 ⟸ ENSRNOT00000055982

Ensembl Acc Id:

ENSRNOP00000069379 ⟸ ENSRNOT00000084076

Ensembl Acc Id:

ENSRNOP00000068489 ⟸ ENSRNOT00000076739

Protein Domains

ATP-dependent DNA ligase family profile BRCT PARP-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A096MKE9-F1-model_v2	AlphaFold	A0A096MKE9	1-1002	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13697515

Promoter ID:

EPDNEW_R8039

Type:

initiation region

Name:

Lig3_1

Description:

DNA ligase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	70,134,766 - 70,134,826	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-23919	BioCyc
Ensembl Genes	ENSRNOG00000021815	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055982	ENTREZGENE
	ENSRNOT00000055982.5	UniProtKB/TrEMBL
	ENSRNOT00000076739	ENTREZGENE
	ENSRNOT00000076739.3	UniProtKB/TrEMBL
	ENSRNOT00000084076	ENTREZGENE
	ENSRNOT00000084076.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3260.10	UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/TrEMBL
	3.30.1490.70	UniProtKB/TrEMBL
	3.30.1740.10	UniProtKB/TrEMBL
	3.40.50.10190	UniProtKB/TrEMBL
	DNA ligase/mRNA capping enzyme	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135421	IMAGE-MGC_LOAD
InterPro	ATP-dep_DNA_ligase	UniProtKB/TrEMBL
	BRCT_dom	UniProtKB/TrEMBL
	BRCT_dom_sf	UniProtKB/TrEMBL
	DNA_ligase	UniProtKB/TrEMBL
	DNA_ligase_A_C	UniProtKB/TrEMBL
	DNA_ligase_A_M	UniProtKB/TrEMBL
	DNA_ligase_A_N	UniProtKB/TrEMBL
	DNA_ligase_CS	UniProtKB/TrEMBL
	DNA_ligase_N_sf	UniProtKB/TrEMBL
	LIG3_BRCT	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	Znf_PARP	UniProtKB/TrEMBL
	Znf_PARP_sf	UniProtKB/TrEMBL
MGC_CLONE	MGC:95328	IMAGE-MGC_LOAD
NCBI Gene	303369	ENTREZGENE
PANTHER	DNA LIGASE 1/3 FAMILY MEMBER	UniProtKB/TrEMBL
	DNA LIGASE 3	UniProtKB/TrEMBL
Pfam	DNA_ligase_A_C	UniProtKB/TrEMBL
	DNA_ligase_A_M	UniProtKB/TrEMBL
	DNA_ligase_A_N	UniProtKB/TrEMBL
	LIG3_BRCT	UniProtKB/TrEMBL
	zf-PARP	UniProtKB/TrEMBL
PhenoGen	Lig3	PhenoGen
PROSITE	BRCT	UniProtKB/TrEMBL
	DNA_LIGASE_A1	UniProtKB/TrEMBL
	DNA_LIGASE_A2	UniProtKB/TrEMBL
	DNA_LIGASE_A3	UniProtKB/TrEMBL
	PARP_ZN_FINGER_1	UniProtKB/TrEMBL
	PARP_ZN_FINGER_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021815	RatGTEx
SMART	BRCT	UniProtKB/TrEMBL
	zf-PARP	UniProtKB/TrEMBL
Superfamily-SCOP	DNA ligase/mRNA capping enzyme, catalytic domain	UniProtKB/TrEMBL
	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	Nucleic_acid_OB	UniProtKB/TrEMBL
	SSF117018	UniProtKB/TrEMBL
	SSF52113	UniProtKB/TrEMBL
UniProt	A0A096MKE9	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JV76	ENTREZGENE, UniProtKB/TrEMBL
	A6HHE1	ENTREZGENE, UniProtKB/TrEMBL
	F7FP17_RAT	UniProtKB/TrEMBL
	Q5U2M4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Lig3	DNA ligase 3	Lig3	ligase III, DNA, ATP-dependent	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Lig3	ligase III, DNA, ATP-dependent	Lig3_predicted	ligase III, DNA, ATP-dependent (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lig3_predicted	ligase III, DNA, ATP-dependent (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Annotations - KEGG (archival)