Fkbp1a (FKBP prolyl isomerase 1A)

Advanced Search (OLGA)

Gene: Fkbp1a (FKBP prolyl isomerase 1A) Chinchilla lanigera

Analyze

Symbol:

Fkbp1a

Name:

FKBP prolyl isomerase 1A

RGD ID:

8920470

Description:

ENCODES a protein that exhibits activin receptor binding (ortholog); channel regulator activity (ortholog); enzyme binding (ortholog); INVOLVED IN amyloid fibril formation (ortholog); cytokine-mediated signaling pathway (ortholog); heart morphogenesis (ortholog); PARTICIPATES IN activin signaling pathway; mTOR signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Barth syndrome (ortholog); congenital heart disease (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

FK506 binding protein 1A; FK506 binding protein 1A, 12kDa; peptidyl-prolyl cis-trans isomerase FKBP1A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955596	580,106 - 603,255 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955596	580,106 - 606,210 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Barth syndrome (ISO)

congenital heart disease (ISO)

esophagus squamous cell carcinoma (ISO)

Experimental Liver Cirrhosis (ISO)

Parkinsonism (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amyloid fibril formation (ISO)

cytokine-mediated signaling pathway (ISO)

heart morphogenesis (ISO)

heart trabecula formation (ISO)

muscle contraction (ISO)

negative regulation of activin receptor signaling pathway (ISO)

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

protein peptidyl-prolyl isomerization (ISO)

regulation of amyloid precursor protein catabolic process (ISO)

regulation of immune response (ISO)

regulation of protein localization (ISO)

regulation of ryanodine-sensitive calcium-release channel activity (ISO)

regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion (ISO)

release of sequestered calcium ion into cytosol (ISO)

response to caffeine (ISO)

response to iron ion (ISO)

supramolecular fiber organization (ISO)

T cell proliferation (ISO)

ventricular cardiac muscle tissue morphogenesis (ISO)

Cellular Component

axon terminus (ISO)

cytoplasm (ISO)

cytosol (ISO)

membrane (ISO)

sarcoplasmic reticulum membrane (ISO)

synapse (ISO)

Z disc (ISO)

Molecular Function

activin receptor binding (ISO)

channel regulator activity (ISO)

enzyme binding (ISO)

FK506 binding (ISO)

Hsp70 protein binding (ISO)

I-SMAD binding (ISO)

identical protein binding (ISO)

peptidyl-prolyl cis-trans isomerase activity (ISO)

protein binding (ISO)

signaling receptor inhibitor activity (ISO)

transforming growth factor beta receptor binding (ISO)

transmembrane transporter binding (ISO)

type I transforming growth factor beta receptor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

activin signaling pathway (ISO)

mTOR signaling pathway (ISO)

transforming growth factor-beta Smad dependent signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Fkbp1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955596	580,106 - 603,255 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955596	580,106 - 606,210 (-)	NCBI	ChiLan1.0	ChiLan1.0

FKBP1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	1,368,978 - 1,393,054 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	1,368,977 - 1,393,164 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	1,349,622 - 1,373,698 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	1,297,622 - 1,321,745 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	1,300,375 - 1,321,745	NCBI
Celera	20	1,445,967 - 1,470,163 (-)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	1,302,109 - 1,326,302 (-)	NCBI		HuRef
CHM1_1	20	1,349,285 - 1,373,817 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	1,418,161 - 1,442,241 (-)	NCBI		T2T-CHM13v2.0

Fkbp1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	151,384,403 - 151,403,611 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	151,384,403 - 151,403,612 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	151,542,483 - 151,561,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	151,542,483 - 151,561,692 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	151,368,235 - 151,387,427 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	151,234,062 - 151,253,132 (+)	NCBI		MGSCv36	mm8
Celera	2	157,359,901 - 157,379,075 (+)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	74.83	NCBI

Fkbp1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,500,748 - 160,520,492 (+)	NCBI		GRCr8
mRatBN7.2	3	140,040,359 - 140,060,107 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	140,040,278 - 140,060,743 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	143,944,928 - 143,964,668 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	152,528,701 - 152,548,443 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	150,269,170 - 150,288,910 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	147,042,944 - 147,062,725 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	147,042,944 - 147,062,724 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	153,399,455 - 153,418,857 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	141,861,237 - 141,880,797 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	141,766,809 - 141,786,369 (+)	NCBI
Celera	3	138,799,643 - 138,819,482 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

FKBP1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	2,399,937 - 2,432,330 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	2,396,766 - 2,426,602 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	1,519,330 - 1,548,473 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	1,292,519 - 1,298,888 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

FKBP1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	19,618,581 - 19,643,685 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	19,618,558 - 19,643,046 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	24	20,310,591 - 20,335,863 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	20,310,075 - 20,335,863 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	19,587,096 - 19,612,324 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	19,692,087 - 19,717,321 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	20,122,927 - 20,148,189 (+)	NCBI		UU_Cfam_GSD_1.0

Fkbp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	168,873,992 - 168,880,432 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936485	17,305,376 - 17,311,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FKBP1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	33,910,047 - 33,935,212 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	38,470,202 - 38,495,226 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FKBP1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	55,170,816 - 55,195,380 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666087	1,575,983 - 1,600,558 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fkbp1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	2,666,636 - 2,692,938 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	2,669,909 - 2,692,959 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005414706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013510019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013510020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01076523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01076524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01000555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000000554 ⟹ ENSCLAP00000000525

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955596	580,106 - 603,255 (-)	Ensembl

RefSeq Acc Id:

XM_005414705 ⟹ XP_005414762

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955596	580,106 - 603,038 (-)	NCBI

Sequence:

show sequence

GCAGGAGACGCGCGGAGGAACGAAGCCGAGCCCCGGAACCGCTGCCAGGTCTGCTCAGTCCACG
CCGTCCGTCTCGCCGCCCGCCCAGCGTCCGCCGCCGCCATGGGAGTGCAGGTGGAGACCATCTC
CCCAGGAGACGGGCGCACCTTCCCGAAGCGTGGCCAGACCTGCGTGGTGCACTACACCGGGATG
CTGGAAGATGGAAAGAAATTCGACTCCTCCCGGGACAGAAACAAGCCCTTTAAATTTATGCTAG
GCAAACAGGAGGTGATCCGAGGCTGGGAGGAAGGGGTGGCCCAGATGAGTGTGGGTCAGAGAGC
CAAACTGACTATCTCCGCAGACTATGCCTATGGTGCCACTGGGCACCCGGGCATCATCCCACCA
CACGCCACTCTTGTCTTCGACGTGGAGCTTCTAAAATTGGAATGACAGGAGTGGCCTCCTCCCT
TAGCTCCCTGTTCTTGCAGATCTGCTATGGAGGGATCCTGTGTCTCCAGATGCGTGCACATGAA
TCCACATGGAGCTTTTCCTGATATCCCACTACTCTTTGTATAAACATCTACCCCGACTGAATGT
GTTCTGTCACTCAGCTTTGCTTCTGACACCTCCATTTCCTCTTCCCTTCCTCCTTGTATGTGTG
TTTACCGAAACTACATGCCATAAACCTCAAGTTACTCATTTTGTTTCTGTGTTGGATGAAGATT
CAGTTTCAGTCTTTTTGACCTAGTTTCCAATTAAGTATATTGTCAAGTATTAACAGCACAAGTG
ATGGGTTAAACTTTAGAATAGTAATTGGTGTTGGGGTATGGTTTGCAAGAATCTTTTTATTTTT
TTGGATGAAATCTTTATCTATTATATATTAAACATTCTTGCTGCTGCGCTGCAAAGCCATAGCA
GATTTGAGACGCTGTTGAGGGCTGAATTATTCTCCATTGTGAGAGACGTCCTTGGGTTAAGTTA
AAAGCCCTACCCAAAACGAAGTGGGGAGGGGGAGAACCTTAGCCTCTGCCAGCCCCAGCCACCT
CCTCTGAAATCTTTGCCTTTTGAAAGCAGGTCACTTTCACTGCGATGTTGGACACTACAGGTAT
CTGTCCCTGGGCCAGCAGGGACCTCTGCTGCCTTTTCATGACCTGCCCCCGCCCCCCGATCCTG
TGGTTTTTTCTAGTGGATTTTCAGGACTTTTGTAATCTCGTAACTATCCAAGTTCCACTTCCTA
AATTTTAAGAACTTCAATTGAAAGTTTAAATTGAAGGTGCTGTTCGTAGACTTATGACCCAATG
AAAGCCCTGCCATCATGACAAATCCTTGAATGTTCTCTTAAGATAATGATGCTGGTCATCACAG
CTTCAGCATCCCCTGTTTTTGGGTTTTCTTTGTTTTTGTGGGGTTTTTTGTTCTGTTTTTTATG
CTTGGCTCTCTCTGCTGATCTCAGAGTTCCCTGGCTTTTCTTCCCTCAGTCCCTTCTCACCCTT
TGCTGTCCTGTGTAGTGATTTGGTGAGAGATCATTGCTTTGTTCCCCACTCCACACACCCTCAG
CAACACCCCTCCCCCATACCACATATGAGTTTCAAGTTTTATTATTGCAATAAAAGTGCTTTAT
GCTGGCTTTTCTCA

hide sequence

RefSeq Acc Id:

XM_005414706 ⟹ XP_005414763

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955596	580,106 - 603,072 (-)	NCBI

Sequence:

show sequence

ACGCAGGGCGGGGCGTGCGGGGGCGCGCGCTTGCGCAGGAGACGCGCGGAGGAACGAAGCCGAG
CCCCGGAACCGCTGCCAGGTCTGCTCAGTCCACGCCGTCCGTCTCGCCGCCCGCCCAGCGTCCG
CCGCCGCCATGGGAGTGCAGGTGGAGACCATCTCCCCAGGAGACGGGCGCACCTTCCCGAAGCG
TGGCCAGACCTGCGTGGTGCACTACACCGGGATGCTGGAAGATGGAAAGAAATTCGACTCCTCC
CGGGACAGAAACAAGCCCTTTAAATTTATGCTAGGCAAACAGGAGGTGATCCGAGGCTGGGAGG
AAGGGGTGGCCCAGATGAGTGTGGGTCAGAGAGCCAAACTGACTATCTCCGCAGACTATGCCTA
TGGTGCCACTGGGCACCCGGGCATCATCCCACCACACGCCACTCTTGTCTTCGACGTGGAGCTT
CTAAAATTGGAATGACAGGAGTGGCCTCCTCCCTTAGCTCCCTGTTCTTGATCTGCTATGGAGG
GATCCTGTGTCTCCAGATGCGTGCACATGAATCCACATGGAGCTTTTCCTGATATCCCACTACT
CTTTGTATAAACATCTACCCCGACTGAATGTGTTCTGTCACTCAGCTTTGCTTCTGACACCTCC
ATTTCCTCTTCCCTTCCTCCTTGTATGTGTGTTTACCGAAACTACATGCCATAAACCTCAAGTT
ACTCATTTTGTTTCTGTGTTGGATGAAGATTCAGTTTCAGTCTTTTTGACCTAGTTTCCAATTA
AGTATATTGTCAAGTATTAACAGCACAAGTGATGGGTTAAACTTTAGAATAGTAATTGGTGTTG
GGGTATGGTTTGCAAGAATCTTTTTATTTTTTTGGATGAAATCTTTATCTATTATATATTAAAC
ATTCTTGCTGCTGCGCTGCAAAGCCATAGCAGATTTGAGACGCTGTTGAGGGCTGAATTATTCT
CCATTGTGAGAGACGTCCTTGGGTTAAGTTAAAAGCCCTACCCAAAACGAAGTGGGGAGGGGGA
GAACCTTAGCCTCTGCCAGCCCCAGCCACCTCCTCTGAAATCTTTGCCTTTTGAAAGCAGGTCA
CTTTCACTGCGATGTTGGACACTACAGGTATCTGTCCCTGGGCCAGCAGGGACCTCTGCTGCCT
TTTCATGACCTGCCCCCGCCCCCCGATCCTGTGGTTTTTTCTAGTGGATTTTCAGGACTTTTGT
AATCTCGTAACTATCCAAGTTCCACTTCCTAAATTTTAAGAACTTCAATTGAAAGTTTAAATTG
AAGGTGCTGTTCGTAGACTTATGACCCAATGAAAGCCCTGCCATCATGACAAATCCTTGAATGT
TCTCTTAAGATAATGATGCTGGTCATCACAGCTTCAGCATCCCCTGTTTTTGGGTTTTCTTTGT
TTTTGTGGGGTTTTTTGTTCTGTTTTTTATGCTTGGCTCTCTCTGCTGATCTCAGAGTTCCCTG
GCTTTTCTTCCCTCAGTCCCTTCTCACCCTTTGCTGTCCTGTGTAGTGATTTGGTGAGAGATCA
TTGCTTTGTTCCCCACTCCACACACCCTCAGCAACACCCCTCCCCCATACCACATATGAGTTTC
AAGTTTTATTATTGCAATAAAAGTGCTTTATGCTGGCTTTTCTCA

hide sequence

RefSeq Acc Id:

XM_013510019 ⟹ XP_013365473

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955596	583,419 - 606,210 (-)	NCBI

Sequence:

show sequence

TACAGCTTTCAAAAGATGAACACTTCTACGCCTGACGATAAGGGGCTCCTTGTCCATGGAGGCA
TTAACGGAAAACATGGGCAACTCTTTAGAAGCTTGTCTGAGGAGGCGATTCCAGCATTTGAAAA
GCTTGGATTCAATTCAGCTTCAATCCTGGAAGTACACACCAGGACAATGTTACAGCAGATGCTT
TCTACTGCTGCTACAAGGATGCGGAAACTTGAGAAGGGAGATGGAACCAGGCTGGAGGCTAAGA
GAAAGCAAGTGAGACGCCAGCGAGACGCCGCCTCCCACACAGCTGCATCCGGAGCCCTCGGAAC
TTCCCAACTTCCTGTCCCTCTGAGCTCCGGCTCGCACTTCCGGTACGCGCCCCGCCTGGGGGAC
GCGCACGCAGGGCGGGGCGTGCGGGGGCGCGCGCTTGCGCAGGAGACGCGCGGAGGAACGAAGC
CGAGCCCCGGAACCGCTGCCAGGTCTGCTCAGTCCACGCCGTCCGTCTCGCCGCCCGCCCAGCG
TCCGCCGCCGCCATGGGAGTGCAGGTGGAGACCATCTCCCCAGGAGACGGGCGCACCTTCCCGA
AGCGTGGCCAGACCTGCGTGGTGCACTACACCGGGATGCTGGAAGATGGAAAGAAATTCGACTC
CTCCCGGGACAGAAACAAGCCCTTTAAATTTATGCTAGGCAAACAGGAGGTGATCCGAGGCTGG
GAGGAAGGGGTGGCCCAGATGAGTGTGGGTCAGAGAGCCAAACTGACTATCTCCGCAGACTATG
CCTATGGTGCCACTGGGCACCCGGGCATCATCCCACCACACGCC

hide sequence

RefSeq Acc Id:

XM_013510020 ⟹ XP_013365474

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955596	581,275 - 603,038 (-)	NCBI

Sequence:

show sequence

GCAGGAGACGCGCGGAGGAACGAAGCCGAGCCCCGGAACCGCTGCCAGGTCTGCTCAGTCCACG
CCGTCCGTCTCGCCGCCCGCCCAGCGTCCGCCGCCGCCATGGGAGTGCAGGTGGAGACCATCTC
CCCAGGAGACGGGCGCACCTTCCCGAAGCGTGGCCAGACCTGCGTGGTGCACTACACCGGGATG
CTGGAAGATGGAAAGAAATTCGACTCCTCCCGGGACAGAAACAAGCCCTTTAAATTTATGCTAG
GCAAACAGGAGGTGATCCGAGGCTGGGAGGAAGGGGTGGCCCAGATGAGTGTGGGTCAGAGAGC
CAAACTGACTATCTCCGCAGACTATGCCTATGGTGCCACTGGGCACCCGGGCATCATCCCACCA
CACGCCACTCTTGTCTTCGACGTGGAGCTTCTAAAATTGGAATGACAGGAGTGGCCTCCTCCCT
TAGCTCCCTGTTCTTGTGAGAAGAGAAATGATGTAGTCCCAGCAAGACCACTCAGCTGCTGGGG
ACAGGAGTTGGCATGGCAGATGGCACTGTGGCTCTCCTCATAAAGAACACTGAATTGCTGGAAT
TCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414762	(Get FASTA)	NCBI Sequence Viewer
	XP_005414763	(Get FASTA)	NCBI Sequence Viewer
	XP_013365473	(Get FASTA)	NCBI Sequence Viewer
	XP_013365474	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000525
	ENSCLAP00000000525.1

RefSeq Acc Id:	XP_005414763 ⟸ XM_005414706
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YI73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGV AQMSVGQRAKLTISADYAYGATGHPGIIPPHATLVFDVELLKLE hide sequence

RefSeq Acc Id:	XP_005414762 ⟸ XM_005414705
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YI73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGV AQMSVGQRAKLTISADYAYGATGHPGIIPPHATLVFDVELLKLE hide sequence

RefSeq Acc Id:	XP_013365474 ⟸ XM_013510020
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YI73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGV AQMSVGQRAKLTISADYAYGATGHPGIIPPHATLVFDVELLKLE hide sequence

RefSeq Acc Id:

XP_013365473 ⟸ XM_013510019

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNTSTPDDKGLLVHGGINGKHGQLFRSLSEEAIPAFEKLGFNSASILEVHTRTMLQQMLSTAAT
RMRKLEKGDGTRLEAKRKQVRRQRDAASHTAASGALGTSQLPVPLSSGSHFRYAPRLGDAHAGR
GVRGRALAQETRGGTKPSPGTAARSAQSTPSVSPPAQRPPPPWECRWRPSPQETGAPSRSVARP
AWCTTPGCWKMERNSTPPGTETSPLNLC

hide sequence

Ensembl Acc Id:

ENSCLAP00000000525 ⟸ ENSCLAT00000000554

Protein Domains

PPIase FKBP-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000427	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000554	ENTREZGENE
	ENSCLAT00000000554.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.50.40	UniProtKB/TrEMBL
InterPro	FKBP-type_PPIase	UniProtKB/TrEMBL
	PPIase_dom_sf	UniProtKB/TrEMBL
	PPIase_FKBP_dom	UniProtKB/TrEMBL
NCBI Gene	Fkbp1a	ENTREZGENE
PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	UniProtKB/TrEMBL
	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A-RELATED	UniProtKB/TrEMBL
Pfam	FKBP_C	UniProtKB/TrEMBL
PROSITE	FKBP_PPIASE	UniProtKB/TrEMBL
Superfamily-SCOP	FKBP-like	UniProtKB/TrEMBL
UniProt	A0A8C2YI73	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-11-06	Fkbp1a	FKBP prolyl isomerase 1A		FK506 binding protein 1A	Symbol and/or name change	5135510	APPROVED
2016-08-16	Fkbp1a	FK506 binding protein 1A		FK506 binding protein 1A, 12kDa	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)