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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:pharyngeal arch hypoplasia
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Accession:MP:0003873 term browser browse the term
Definition:decrease in the number of normal cells in normal arrangement in the pharyngeal arches, typically resulting in decreased size
Synonyms:exact_synonym: branchial arch hypoplasia;   hypoplastic branchial arches
 related_synonym: decreased branchial arch cellularity


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pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 PMID:16720880 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:15184386 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:18955134 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gng5 G protein subunit gamma 5 IAGP MGI PMID:24599258 NCBI chr 3:146,205,591...146,211,298
Ensembl chr 3:146,205,562...146,211,327 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19415626 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Gtf2i general transcription factor II I IAGP MGI PMID:19109438 NCBI chr 5:134,266,686...134,346,571
Ensembl chr 5:134,266,688...134,343,614 		JBrowse link
G Gtf2ird1 general transcription factor II I repeat domain-containing 1 IAGP MGI PMID:19109438 NCBI chr 5:134,386,515...134,485,628
Ensembl chr 5:134,386,510...134,485,570 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9671575 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157 		JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:16720880 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983 		JBrowse link
G Setd2 SET domain containing 2 IAGP MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,361,665...110,447,701 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Tdg thymine DNA glycosylase IAGP MGI PMID:21722948 NCBI chr10:82,465,649...82,486,633
Ensembl chr10:82,465,662...82,486,633 		JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
first pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Gng5 G protein subunit gamma 5 IAGP MGI PMID:24599258 NCBI chr 3:146,205,591...146,211,298
Ensembl chr 3:146,205,562...146,211,327 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:1459449 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Stk11 serine/threonine kinase 11 IAGP MGI PMID:11509733 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
fourth pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B IAGP MGI PMID:19470456 NCBI chr 5:135,214,094...135,274,985
Ensembl chr 5:135,216,118...135,274,983 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
second pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:21305688 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16914493 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
third pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Rxra retinoid X receptor alpha IAGP MGI PMID:19255444 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969 		JBrowse link
G Rxrb retinoid X receptor beta IAGP MGI PMID:19255444 NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16749
    craniofacial phenotype 1621
      abnormal craniofacial morphology 1621
        abnormal craniofacial development 525
          abnormal pharyngeal arch morphology 216
            small pharyngeal arch 70
              pharyngeal arch hypoplasia 28
                first pharyngeal arch hypoplasia 6
                fourth pharyngeal arch hypoplasia 2
                second pharyngeal arch hypoplasia 6
                sixth pharyngeal arch hypoplasia 0
                third pharyngeal arch hypoplasia 5
paths to the root