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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation

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regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004936777:434,729...447,778
Ensembl chrNW_004936777:434,692...447,780 		JBrowse link
G Ephb2 EPH receptor B2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:33280498) Ensembl
UniProt		 PMID:33280498 GO_REF:0000107 NCBI chrNW_004936474:8,109,800...8,203,106
Ensembl chrNW_004936474:8,109,031...8,203,106 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004936720:1,041,216...1,168,725
Ensembl chrNW_004936720:1,041,211...1,168,748 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937211:67,199...92,204
Ensembl chrNW_004937211:55,221...92,040 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936950:242,071...323,204
Ensembl chrNW_004936950:242,522...320,078 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,317,258...3,324,208
Ensembl chrNW_004936599:3,317,258...3,324,213 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004936474:5,947,077...5,947,772 JBrowse link
G Rnf5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chrNW_004936727:1,422,207...1,424,808
Ensembl chrNW_004936727:1,422,207...1,424,739 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,761,034...18,864,578
Ensembl chrNW_004936477:18,761,477...18,859,988 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chrNW_004936727:1,648,451...1,663,294
Ensembl chrNW_004936727:1,648,448...1,663,455 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:1,871,808...1,917,370
Ensembl chrNW_004936743:1,871,664...1,903,245 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936663:1,576,311...1,637,363
Ensembl chrNW_004936663:1,576,269...1,623,296 		JBrowse link
G LOC101959716 transmembrane protein 39A-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936531:7,196,458...7,198,575 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
MGI
TreeGrafter		 PMID:23695157 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:528,832...533,212
Ensembl chrNW_004936595:528,516...533,235 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:5,410,219...5,501,687
Ensembl chrNW_004936494:5,410,269...5,501,498 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:294,116...313,893
Ensembl chrNW_004936872:294,066...313,293 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,838,974...1,848,742
Ensembl chrNW_004936741:1,838,834...1,844,459 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:6,376,539...6,406,314 JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:653,434...736,660
Ensembl chrNW_004936704:653,403...739,151 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,181,009...15,217,952
Ensembl chrNW_004936487:15,180,811...15,217,406 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:1,111,256...1,113,651
Ensembl chrNW_004936733:1,111,958...1,113,010 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,383,737...5,540,176
Ensembl chrNW_004936520:5,383,737...5,540,203 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,168,951...14,201,712
Ensembl chrNW_004936490:14,168,981...14,202,108 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,737,088...1,748,056
Ensembl chrNW_004936646:1,737,034...1,748,057 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,642,240...40,727,831
Ensembl chrNW_004936469:40,641,928...40,727,837 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936650:1,944,291...2,054,847
Ensembl chrNW_004936650:1,944,346...2,056,665 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:50,237,804...50,279,483
Ensembl chrNW_004936469:50,236,409...50,279,583 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936732:2,066,848...2,097,947
Ensembl chrNW_004936732:2,067,204...2,097,631 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004936480:13,108,510...13,137,550 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx4 sorting nexin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004937215:127,074...137,281 JBrowse link
G Snx7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      regulation of cellular process 10354
        regulation of cellular component biogenesis 1111
          regulation of organelle assembly 266
            regulation of autophagosome assembly 47
              negative regulation of autophagosome assembly 14
              positive regulation of autophagosome assembly 20
Path 2
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      cellular metabolic process 7988
        cellular catabolic process 1001
          autophagy 501
            macroautophagy 307
              autophagosome organization 121
                autophagosome assembly 113
                  regulation of autophagosome assembly 47
                    negative regulation of autophagosome assembly 14
                    positive regulation of autophagosome assembly 20
paths to the root