Mtm1 (myotubularin 1) - Rat Genome Database

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Gene: Mtm1 (myotubularin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Mtm1
Name: myotubularin 1
RGD ID: 12683334
Description: ENCODES a protein that exhibits intermediate filament binding (ortholog); phosphatidylinositol binding (ortholog); phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); intermediate filament organization (ortholog); mitochondrion distribution (ortholog); ASSOCIATED WITH autistic disorder (ortholog); centronuclear myopathy (ortholog); centronuclear myopathy 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); filopodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myotubularin; myotubularin 1, transcript variant X1; myotubularin 1, transcript variant X2; myotubularin 1, transcript variant X3; myotubularin 1, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,358,970 - 116,463,514 (+)NCBI
SpeTri2.0NW_0049367141,792,893 - 1,870,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Mtm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,358,970 - 116,463,514 (+)NCBI
SpeTri2.0NW_0049367141,792,893 - 1,870,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX150,568,621 - 150,673,143 (+)EnsemblGRCh38hg38GRCh38
GRCh38X150,562,658 - 150,673,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X149,737,071 - 149,841,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,487,727 - 149,592,272 (+)NCBINCBI36hg18NCBI36
Build 34X149,407,636 - 149,512,182NCBI
CeleraX149,984,899 - 150,089,187 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX138,597,863 - 138,702,094 (+)NCBIHuRef
CHM1_1X149,611,646 - 149,715,992 (+)NCBICHM1_1
Mtm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,254,373 - 70,359,019 (+)NCBIGRCm39mm39
GRCm39 EnsemblX70,254,373 - 70,359,297 (+)Ensembl
GRCm38X71,210,767 - 71,315,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,210,767 - 71,315,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X68,463,942 - 68,568,470 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X67,475,638 - 67,575,821 (+)NCBImm8
CeleraX62,185,213 - 62,295,121 (+)NCBICelera
Cytogenetic MapXA7.2- A7.3NCBI
cM MapX36.55NCBI
Mtm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26488,691 - 506,964 (-)NCBI
Rnor_6.0 Ensembl618,821,815 - 18,839,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0618,821,821 - 18,840,449 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0628,722,724 - 28,736,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47247,960 - 265,281 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17247,959 - 265,280 (+)NCBI
Celera6311,677 - 329,242 (-)NCBICelera
Cytogenetic Map6q12NCBI
Mtm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,329,275 - 6,445,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554986,329,402 - 6,444,708 (+)NCBIChiLan1.0ChiLan1.0
MTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X150,174,762 - 150,255,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,174,758 - 150,255,381 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X140,218,742 - 140,323,495 (+)NCBIMhudiblu_PPA_v0panPan3
MTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,820,644 - 118,917,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,820,494 - 118,916,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX104,201,980 - 104,298,484 (+)NCBI
ROS_Cfam_1.0X121,040,671 - 121,137,182 (+)NCBI
UMICH_Zoey_3.1X117,766,609 - 117,863,103 (+)NCBI
UNSW_CanFamBas_1.0X120,208,871 - 120,297,026 (+)NCBI
UU_Cfam_GSD_1.0X120,127,109 - 120,223,642 (+)NCBI
MTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,286,916 - 122,379,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,286,904 - 122,379,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X139,901,788 - 139,994,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X125,151,279 - 125,250,816 (+)NCBI
ChlSab1.1 EnsemblX125,174,289 - 125,249,588 (+)Ensembl
Vero_WHO_p1.0NW_02366606562,852,091 - 62,955,331 (+)NCBI
Mtm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624923952,782 - 1,062,391 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338517   ⟹   XP_005338574
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,368,780 - 116,463,514 (+)NCBI
SpeTri2.0NW_0049367141,792,898 - 1,870,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735421   ⟹   XP_021591096
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049367141,792,898 - 1,870,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735422   ⟹   XP_021591097
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049367141,792,893 - 1,870,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735423   ⟹   XP_021591098
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049367141,792,896 - 1,870,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286734   ⟹   XP_040142668
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,358,974 - 116,463,514 (+)NCBI
RefSeq Acc Id: XM_040286735   ⟹   XP_040142669
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,358,970 - 116,463,514 (+)NCBI
RefSeq Acc Id: XM_040286737   ⟹   XP_040142671
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,358,971 - 116,463,514 (+)NCBI
RefSeq Acc Id: XM_040286744   ⟹   XP_040142678
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,389,178 - 116,463,514 (+)NCBI
RefSeq Acc Id: XM_040286752   ⟹   XP_040142686
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X116,429,390 - 116,463,514 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005338574   ⟸   XM_005338517
- Peptide Label: isoform X3
- UniProtKB: A0A287CWR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591097   ⟸   XM_021735422
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021591098   ⟸   XM_021735423
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021591096   ⟸   XM_021735421
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040142669   ⟸   XM_040286735
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142671   ⟸   XM_040286737
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040142668   ⟸   XM_040286734
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142678   ⟸   XM_040286744
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040142686   ⟸   XM_040286752
- Peptide Label: isoform X6

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015788 ENTREZGENE
Ensembl Protein ENSSTOP00000025737 ENTREZGENE
NCBI Gene Mtm1 ENTREZGENE
UniProt A0A287CWR1 ENTREZGENE