ONTOLOGY REPORT - ANNOTATIONS
Term: autophagosome assembly
Accession: GO:0000045
browse the term
Definition: The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms: exact_synonym: autophagic vacuole assembly; autophagosome biosynthesis; autophagosome formation
narrow_synonym: PAS formation
related_synonym: autophagic vacuole formation
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Ambra1
autophagy and beclin 1 regulator 1
involved_in
ISO
(PMID:20921139), (PMID:25215947)
RGD
PMID:20921139 PMID:25215947
NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
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Ap4m1
adaptor related protein complex 4 subunit mu 1
involved_in
ISO ISS
(PMID:29180427) GO_REF:0000024
RGD UniProt
PMID:29180427
GO_REF:0000024
NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
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Arsg
arylsulfatase G
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
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Atg101
autophagy related 101
involved_in
ISO IBA
(PMID:19225151), (PMID:19597335) PMID:21873635 (MGI:6810791|PMID:19225151)
RGD
PMID:19225151 PMID:19597335 PMID:21873635
MGI:6810791 , RGD:13792537
NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
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Atg12
autophagy related 12
involved_in
IBA ISO
PMID:21873635 (MGI:2137756|PMID:11266458)
RGD
PMID:11266458 PMID:21873635
MGI:2137756 , RGD:13792537
NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
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Atg13
autophagy related 13
acts_upstream_of_or_within involved_in
ISO
(PMID:19211835) (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19211835), (PMID:19225151)
RGD
PMID:19211835 PMID:19225151 PMID:19258318
MGI:3849242 MGI:6810791
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
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Atg14
autophagy related 14
involved_in
IBA ISO
PMID:21873635 (PMID:19270696)
RGD
PMID:19270696 PMID:21873635
RGD:13792537
NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
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Atg16l1
autophagy related 16-like 1
involved_in
IBA ISO
PMID:21873635 (MGI:2137756|PMID:11266458)
RGD
PMID:11266458 PMID:21873635
MGI:2137756 , RGD:13792537
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
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Atg16l2
autophagy related 16-like 2
involved_in NOT|involved_in
IBA ISO
PMID:21873635 (MGI:2137756|PMID:11266458) (MGI:6436405|PMID:22082872)
RGD
PMID:11266458 PMID:22082872 PMID:21873635
MGI:2137756 MGI:6436405 , RGD:13792537
NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
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Atg2a
autophagy related 2A
involved_in
ISO IBA
(PMID:28561066) PMID:21873635
RGD
PMID:28561066 PMID:21873635
RGD:13792537
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
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Atg2b
autophagy related 2B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
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Atg3
autophagy related 3
involved_in acts_upstream_of_or_within
IBA ISO ISS
PMID:21873635 (MGI:4835103|PMID:20723759) (MGI:4880808|PMID:21220506) GO_REF:0000024
RGD UniProt
PMID:20723759 PMID:21220506 PMID:21873635
GO_REF:0000024 MGI:4835103 MGI:4880808 , RGD:13792537
NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
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Atg4b
autophagy related 4B, cysteine peptidase
involved_in
ISO
(MGI:5630037|PMID:25578879)
RGD
PMID:25578879
MGI:5630037
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
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Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IMP ISO IBA
(MGI:2137756|PMID:11266458) (MGI:5500861|PMID:23704209) PMID:21873635
RGD
PMID:11266458 PMID:23704209 PMID:16420522 PMID:21873635
MGI:2137756 MGI:5500861 , RGD:1643189 , RGD:13792537
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
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Atg7
autophagy related 7
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5500861|PMID:23704209) (MGI:4420830|PMID:20080761)
RGD
PMID:20080761 PMID:23704209 PMID:21873635
MGI:4420830 MGI:5500861 , RGD:13792537
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
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Atg9a
autophagy related 9A
acts_upstream_of_or_within involved_in
ISO ISS
MGI:4417824 (MGI:5494547|PMID:22456507), (MGI:5509287|PMID:23402761) GO_REF:0000024 (PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622) (PMID:15755735), (PMID:22456507)
RGD UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 PMID:32513819 PMID:33468622 More...
GO_REF:0000024 MGI:5494547 MGI:5509287
NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
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Atg9b
autophagy related 9B
acts_upstream_of_or_within
ISO
(PMID:15755735)
RGD
PMID:15755735
NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
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Atp2a2
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:28890335)
UniProt RGD
PMID:28890335
GO_REF:0000024
NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
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Bag3
BAG cochaperone 3
involved_in
IMP
PMID:23434281
ARUK-UCL
PMID:23434281
RGD:12793031
NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
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Becn1
beclin 1
involved_in
IMP ISO ISS IBA
(MGI:5619439|PMID:23332761) GO_REF:0000024 PMID:21873635
RGD UniProt
PMID:23332761 PMID:16420522 PMID:21873635
GO_REF:0000024 MGI:5619439 , RGD:1643189 , RGD:13792537
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Becn2
beclin 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
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Ctsd
cathepsin D
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3057045|PMID:15452145) GO_REF:0000107
RGD Ensembl
PMID:15452145
GO_REF:0000107 MGI:3057045
NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488
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Elapor1
endosome-lysosome associated apoptosis and autophagy regulator 1
involved_in
IBA ISO
PMID:21873635 (PMID:21072319)
RGD
PMID:21072319 PMID:21873635
RGD:13792537
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
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Emc6
ER membrane protein complex subunit 6
involved_in
ISO IBA
(PMID:23182941) PMID:21873635
RGD
PMID:23182941 PMID:21873635
RGD:13792537
NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
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Epm2a
EPM2A glucan phosphatase, laforin
acts_upstream_of_or_within
ISO
MGI:2182627 (MGI:5913112|PMID:24430976)
RGD
PMID:24430976
MGI:5913112
NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
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Gabarap
GABA type A receptor-associated protein
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
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Gabarapl1
GABA type A receptor associated protein like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
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Gabarapl2
GABA type A receptor associated protein like 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
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Irgm
immunity-related GTPase M
involved_in
ISO
(PMID:16888103) (MGI:3656111|PMID:16888103)
RGD
PMID:16888103
MGI:3656111
NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
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LOC100359937
GABA(A) receptor-associated protein-like 2-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
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LOC120098596
gamma-aminobutyric acid receptor-associated protein-like 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
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Map1lc3a
microtubule-associated protein 1 light chain 3 alpha
involved_in
ISO IDA IBA
(PMID:24290141) PMID:11060023 PMID:21873635
RGD
PMID:24290141 PMID:11060023 PMID:21873635
RGD:8554284 , RGD:13792537
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
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Map1lc3b
microtubule-associated protein 1 light chain 3 beta
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
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Map1lc3b2
microtubule-associated protein 1 light chain 3 beta 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
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Mtm1
myotubularin 1
acts_upstream_of
ISO
MGI:2450997 (MGI:5510937|PMID:23695157)
RGD
PMID:23695157
MGI:5510937
NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
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Nsfl1c
NSFL1 cofactor
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870
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Pacs2
phosphofurin acidic cluster sorting protein 2
acts_upstream_of_or_within
ISO
(PMID:23455425)
RGD
PMID:23455425
NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
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Pik3c3
phosphatidylinositol 3-kinase, catalytic subunit type 3
acts_upstream_of_or_within involved_in
IMP ISO IBA
(MGI:5565574|PMID:24098492) PMID:21873635
RGD
PMID:24098492 PMID:12453151 PMID:21873635
MGI:5565574 , RGD:2303129 , RGD:13792537
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
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Psen1
presenilin 1
acts_upstream_of_or_within
ISO
MGI:2149116 (MGI:3057045|PMID:15452145)
RGD
PMID:15452145
MGI:3057045
NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
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Rab19
RAB19, member RAS oncogene family
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886
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Rab1a
RAB1A, member RAS oncogene family
involved_in
ISO ISS IBA
(PMID:22939626) GO_REF:0000024 PMID:21873635
RGD UniProt
PMID:22939626 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
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Rab1b
RAB1B, member RAS oncogene family
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
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Rab23
RAB23, member RAS oncogene family
involved_in
ISO IBA
(PMID:22452336) PMID:21873635
RGD
PMID:22452336 PMID:21873635
RGD:13792537
NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927
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Rab33b
RAB33B, member RAS oncogene family
involved_in
ISO
(MGI:5447922|PMID:18448665)
RGD
PMID:18448665
MGI:5447922
NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:135,528,116...135,538,719
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Rab43
RAB43, member RAS oncogene family
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:120,249,878...120,269,174
Ensembl chr 4:120,249,879...120,269,174
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Rab7a
RAB7A, member RAS oncogene family
involved_in
ISO
(PMID:19956673)
RGD
PMID:19956673
NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
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Rb1cc1
RB1-inducible coiled-coil 1
involved_in
IBA ISO
PMID:21873635 (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19225151), (PMID:28890335)
RGD
PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635
MGI:3849242 MGI:6810791 , RGD:13792537
NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
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Rufy4
RUN and FYVE domain containing 4
involved_in
IBA ISO
PMID:21873635 (PMID:26416964)
RGD
PMID:26416964 PMID:21873635
RGD:13792537
NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
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Sting1
stimulator of interferon response cGAMP interactor 1
involved_in
ISO IBA ISS
(PMID:30568238), (PMID:30842662) (MGI:6305034|PMID:30568238) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:30568238 PMID:30842662 PMID:21873635
GO_REF:0000024 MGI:6305034 , RGD:13792537
NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
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Stx12
syntaxin 12
involved_in
ISO
(PMID:24095276)
RGD
PMID:24095276
NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
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Synpo2
synaptopodin 2
involved_in
IMP
PMID:23434281
UniProt
PMID:23434281
RGD:12793031
NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
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Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO
(MGI:6296816|PMID:23908015)
RGD
PMID:23908015
MGI:6296816
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
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Tmem41b
transmembrane protein 41B
involved_in
ISS ISO
GO_REF:0000024 (PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt RGD
PMID:30093494 PMID:30126924 PMID:30933966
GO_REF:0000024
NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933
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Tp53inp1
tumor protein p53 inducible nuclear protein 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
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Tp53inp2
tumor protein p53 inducible nuclear protein 2
involved_in
ISO IEA ISS IBA
(PMID:19056683) GO_REF:0000107 GO_REF:0000024 PMID:21873635
RGD Ensembl UniProt
PMID:19056683 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
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Ubqln1
ubiquilin 1
involved_in
IBA IEA ISO
PMID:21873635 GO_REF:0000107 (PMID:20529957)
Ensembl RGD
PMID:20529957 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
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Ubqln2
ubiquilin 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:17,853,114...17,856,505
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Ubxn2a
UBX domain protein 2A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:27,884,253...27,912,709
Ensembl chr 6:27,884,680...27,912,649
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Ubxn2b
UBX domain protein 2B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849
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Ulk1
unc-51 like autophagy activating kinase 1
involved_in
IBA ISO
PMID:21873635 (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19225151), (PMID:28890335)
RGD
PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635
MGI:3849242 MGI:6810791 , RGD:13792537
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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Ulk2
unc-51 like autophagy activating kinase 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
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Vmp1
vacuole membrane protein 1
involved_in
ISO ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966) GO_REF:0000024
RGD UniProt
PMID:28890335 PMID:30093494 PMID:30933966
GO_REF:0000024
NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
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Wdr45
WD repeat domain 45
involved_in
ISO IEA ISS
(PMID:28561066) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:28561066
GO_REF:0000024 GO_REF:0000107
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
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Wdr45b
WD repeat domain 45B
involved_in
ISO
(PMID:28561066)
RGD
PMID:28561066
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
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Wipi1
WD repeat domain, phosphoinositide interacting 1
involved_in
ISO
(PMID:28561066)
RGD
PMID:28561066
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
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Wipi2
WD repeat domain, phosphoinositide interacting 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt RGD
PMID:20505359 PMID:28561066 PMID:28890335
GO_REF:0000024
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
involved_in
ISO
(PMID:22020285)
RGD
PMID:22020285
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
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Becn1
beclin 1
acts_upstream_of_or_within
ISO
MGI:2683833 (MGI:5888970|PMID:27994061)
RGD
PMID:27994061
MGI:5888970
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Chmp4b
charged multivesicular body protein 4B
involved_in
ISO
(PMID:21975012)
RGD
PMID:21975012
NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
G
Ehmt2
euchromatic histone lysine methyltransferase 2
acts_upstream_of_or_within
ISO
(MGI:5543871|PMID:23918802)
RGD
PMID:23918802
MGI:5543871
NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
G
Fez1
fasciculation and elongation protein zeta 1
involved_in
ISO ISS
(PMID:25495476) GO_REF:0000024
RGD GO_Central
PMID:25495476
GO_REF:0000024
NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
G
Fez2
fasciculation and elongation protein zeta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:25495476)
GO_Central RGD
PMID:25495476
GO_REF:0000024
NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626
G
Lrrk2
leucine-rich repeat kinase 2
involved_in
IBA ISO
PMID:21873635 (PMID:23916833)
RGD
PMID:23916833 PMID:21873635
RGD:13792537
NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
G
Mtm1
myotubularin 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2450997 (MGI:5510937|PMID:23695157)
RGD
PMID:23695157 PMID:21873635
MGI:5510937 , RGD:13792537
NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
G
Nupr1
nuclear protein 1, transcriptional regulator
involved_in
ISS ISO
GO_REF:0000024 (PMID:20181828)
UniProt RGD
PMID:20181828
GO_REF:0000024
NCBI chr 1:181,213,292...181,215,327
G
Phf23
PHD finger protein 23
involved_in
ISO IBA ISS
(PMID:25484098) PMID:21873635 GO_REF:0000024
RGD GO_Central
PMID:25484098 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
G
Pink1
PTEN induced kinase 1
involved_in
ISO
(PMID:19279012)
RGD
PMID:19279012
NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
G
Scfd1
sec1 family domain containing 1
involved_in
ISO
(PMID:21242315)
RGD
PMID:21242315
NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078
G
Sec22b
SEC22 homolog B, vesicle trafficking protein
involved_in
ISO
(PMID:21242315)
RGD
PMID:21242315
NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
G
Smcr8
SMCR8-C9orf72 complex subunit
involved_in
ISO
(PMID:28195531)
RGD
PMID:28195531
NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
G
Tmem39a
transmembrane protein 39a
involved_in
IBA ISS ISO
PMID:21873635 GO_REF:0000024 (PMID:31806350)
UniProt RGD
PMID:31806350 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
G
Arsg
arylsulfatase G
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
G
Atg2a
autophagy related 2A
involved_in
ISO
(PMID:30952800), (PMID:31271352)
RGD
PMID:30952800 PMID:31271352
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
G
Becn1
beclin 1
IMP
RGD
PMID:25561470
RGD:11561937
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
G
Elapor1
endosome-lysosome associated apoptosis and autophagy regulator 1
involved_in
ISO IEA
(PMID:21072319) GO_REF:0000107
RGD Ensembl
PMID:21072319
GO_REF:0000107
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
G
Lrsam1
leucine rich repeat and sterile alpha motif containing 1
involved_in
ISO
(PMID:25484098)
RGD
PMID:25484098
NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
G
Moap1
modulator of apoptosis 1
involved_in
ISO
(PMID:33783314) (MGI:6810697|PMID:33783314)
RGD
PMID:33783314
MGI:6810697
NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
G
Pip4k2a
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha
involved_in
ISO IEA
(PMID:25578879) GO_REF:0000107
RGD Ensembl
PMID:25578879
GO_REF:0000107
NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
G
Pip4k2b
phosphatidylinositol-5-phosphate 4-kinase type 2 beta
involved_in
ISO
(PMID:25578879)
RGD
PMID:25578879
NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
G
Pip4k2c
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
involved_in
ISO
(PMID:25578879)
RGD
PMID:25578879
NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
G
Rab3gap1
RAB3 GTPase activating protein catalytic subunit 1
involved_in
ISO ISS
(PMID:25495476) GO_REF:0000024
RGD GO_Central
PMID:25495476
GO_REF:0000024
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
G
Rab3gap2
RAB3 GTPase activating non-catalytic protein subunit 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:25495476)
GO_Central Ensembl RGD
PMID:25495476
GO_REF:0000024 GO_REF:0000107
NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
G
Ralb
RAS like proto-oncogene B
involved_in
ISO IEA
(PMID:24056301) GO_REF:0000107
RGD Ensembl
PMID:24056301
GO_REF:0000107
NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
G
Sh3glb1
SH3 domain -containing GRB2-like endophilin B1
involved_in
ISO
(PMID:21068542) (MGI:5634888|PMID:21068542)
RGD
PMID:21068542
MGI:5634888
NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
G
Snx18
sorting nexin 18
involved_in
ISO
(PMID:29437695)
RGD
PMID:29437695
NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
G
Snx30
sorting nexin family member 30
involved_in
ISO IBA
(PMID:32513819) PMID:21873635
RGD
PMID:32513819 PMID:21873635
RGD:13792537
NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
G
Snx4
sorting nexin 4
involved_in
ISO IBA
(PMID:32513819), (PMID:33468622) PMID:21873635
RGD
PMID:32513819 PMID:33468622 PMID:21873635
RGD:13792537
NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
G
Snx7
sorting nexin 7
involved_in
ISO
(PMID:32513819)
RGD
PMID:32513819
NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
G
Ulk1
unc-51 like autophagy activating kinase 1
IMP
RGD
PMID:23448468
RGD:13208863
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
G
Wdr45
WD repeat domain 45
involved_in
ISO IEA ISS
(PMID:31271352) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:31271352
GO_REF:0000024 GO_REF:0000107
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
G
Wipi1
WD repeat domain, phosphoinositide interacting 1
involved_in
ISO
(PMID:31271352)
RGD
PMID:31271352
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
G
Atg16l1
autophagy related 16-like 1
acts_upstream_of_or_within
ISO
(MGI:5605433|PMID:24954904)
RGD
PMID:24954904
MGI:5605433
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
G
Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:5543871|PMID:23918802)
Ensembl RGD
PMID:23918802
GO_REF:0000107 MGI:5543871
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
G
Irgm
immunity-related GTPase M
involved_in
ISO
(PMID:28389568)
RGD
PMID:28389568
NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
G
Wipi2
WD repeat domain, phosphoinositide interacting 2
acts_upstream_of_or_within
ISO
(MGI:5605433|PMID:24954904)
RGD
PMID:24954904
MGI:5605433
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
G
Arfip2
ADP-ribosylation factor interacting protein 2
involved_in
ISO ISS
(PMID:33773106) GO_REF:0000024
RGD UniProt
PMID:33773106
GO_REF:0000024
NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:159,974,201...159,980,336
G
Atg13
autophagy related 13
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
G
Atg16l1
autophagy related 16-like 1
acts_upstream_of_or_within
ISO
PR:Q80W47 (MGI:5605433|PMID:24954904)
RGD
PMID:24954904
MGI:5605433
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
G
Atg4b
autophagy related 4B, cysteine peptidase
involved_in
ISO
(PMID:33773106)
RGD
PMID:33773106
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
G
Atg4d
autophagy related 4D, cysteine peptidase
involved_in
ISO
(PMID:33773106)
RGD
PMID:33773106
NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321
G
Atg9a
autophagy related 9A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
G
Atg9b
autophagy related 9B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
G
Lrba
LPS responsive beige-like anchor protein
involved_in
ISO
(PMID:33773106)
RGD
PMID:33773106
NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:171,621,507...172,202,724
G
Mfn2
mitofusin 2
acts_upstream_of_or_within
ISO
(PMID:23455425)
RGD
PMID:23455425
NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
G
Pacs2
phosphofurin acidic cluster sorting protein 2
acts_upstream_of_or_within
ISO
(PMID:23455425)
RGD
PMID:23455425
NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
G
Pik3c3
phosphatidylinositol 3-kinase, catalytic subunit type 3
acts_upstream_of_or_within
ISO
(MGI:5565574|PMID:24098492)
RGD
PMID:24098492
MGI:5565574
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
G
Stx17
syntaxin 17
acts_upstream_of_or_within
ISO
(PMID:23455425)
RGD
PMID:23455425
NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
G
Trappc8
trafficking protein particle complex subunit 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:12,103,874...12,180,422
Ensembl chr18:12,103,877...12,180,107
G
Wdr45
WD repeat domain 45
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
G
Wdr45b
WD repeat domain 45B
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
G
Wipi2
WD repeat domain, phosphoinositide interacting 2
involved_in acts_upstream_of_or_within
ISO IBA ISS
(PMID:28561066) PR:Q8C0J2 (MGI:5605433|PMID:24954904) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:24954904 PMID:28561066 PMID:21873635
GO_REF:0000024 MGI:5605433 , RGD:13792537
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
G
Ift20
intraflagellar transport 20
involved_in
ISO
(MGI:5527012|PMID:24089209)
RGD
PMID:24089209
MGI:5527012
NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
G
Ift88
intraflagellar transport 88
involved_in
ISO
(MGI:5527012|PMID:24089209)
RGD
PMID:24089209
MGI:5527012
NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
G
Mtmr3
myotubularin related protein 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:25578879)
Ensembl RGD
PMID:25578879
GO_REF:0000107
NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
G
Pikfyve
phosphoinositide kinase, FYVE-type zinc finger containing
involved_in
ISO
(PMID:25578879)
RGD
PMID:25578879
NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
G
Rab1b
RAB1B, member RAS oncogene family
involved_in
ISO
(PMID:20545908)
RGD
PMID:20545908
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
G
RGD1359108
similar to RIKEN cDNA 3110043O21
involved_in
ISO IEA ISS
(PMID:27334615) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:27334615
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
G
Rnf5
ring finger protein 5
acts_upstream_of_or_within
ISO
MGI:3775796 (MGI:5469257|PMID:23093945)
RGD
PMID:23093945
MGI:5469257
NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985
G
Tbc1d12
TBC1 domain family, member 12
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:236,603,607...236,685,859
G
Tbc1d14
TBC1 domain family, member 14
involved_in
ISO IEA IBA
(PMID:22613832) GO_REF:0000107 PMID:21873635
RGD Ensembl
PMID:22613832 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
G
Ubqln2
ubiquilin 2
involved_in
ISO
(PMID:20529957)
RGD
PMID:20529957
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:17,853,114...17,856,505
G
Smurf1
SMAD specific E3 ubiquitin protein ligase 1
involved_in
ISO
(PMID:22020285)
RGD
PMID:22020285
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
G
Stbd1
starch binding domain 1
involved_in
ISO IEA
MGI:6356543 (MGI:5803726|PMID:27358407) GO_REF:0000107 MGI:6356543 (MGI:5803726|PMID:27358407), (MGI:7261139|PMID:20810658)
RGD Ensembl
PMID:20810658 PMID:27358407
GO_REF:0000107 MGI:5803726 MGI:7261139
NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
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