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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07048308.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07072668.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:55,052,756...55,053,109 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:25215947) RGD PMID:25215947 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Atg101 autophagy related 101 involved_in IBA
ISO
PMID:21873635
(PMID:19597335)
RGD PMID:19597335 PMID:21873635 RGD:13792537 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg12 autophagy related 12 involved_in IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
RGD PMID:11266458 PMID:21873635 MGI:2137756, RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within
ISO (PMID:19211835)
(MGI:3849242|PMID:19258318)
RGD PMID:19211835 PMID:19258318 MGI:3849242 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 involved_in IBA
ISO
PMID:21873635
(PMID:19270696)
RGD PMID:19270696 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in
NOT|involved_in
IBA
ISO
PMID:21873635
(MGI:6436405|PMID:22082872)
RGD PMID:22082872 PMID:21873635 MGI:6436405, RGD:13792537 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA
(PMID:28561066)
PMID:21873635
RGD PMID:28561066 PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:4835103|PMID:20723759)
(MGI:4880808|PMID:21220506)
GO_REF:0000024
RGD
UniProt
PMID:20723759 PMID:21220506 PMID:21873635 GO_REF:0000024 MGI:4835103 MGI:4880808, RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (MGI:5630037|PMID:25578879) RGD PMID:25578879 MGI:5630037 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
ISO
IBA
(MGI:2137756|PMID:11266458)
(MGI:5500861|PMID:23704209)
PMID:21873635
RGD PMID:11266458 PMID:23704209 PMID:16420522 PMID:21873635 MGI:2137756 MGI:5500861, RGD:1643189, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5500861|PMID:23704209)
(MGI:4420830|PMID:20080761)
RGD PMID:20080761 PMID:23704209 PMID:21873635 MGI:4420830 MGI:5500861, RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within ISO MGI:4417824 (MGI:5494547|PMID:22456507), (MGI:5509287|PMID:23402761)
(PMID:15755735), (PMID:22456507)
RGD PMID:15755735 PMID:22456507 PMID:23402761 MGI:5494547 MGI:5509287 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
ISS
IBA
(MGI:5619439|PMID:23332761)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:23332761 PMID:16420522 PMID:21873635 GO_REF:0000024 MGI:5619439, RGD:1643189, RGD:13792537 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO (MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:3057045 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IBA
ISO
PMID:21873635
(PMID:21072319)
RGD PMID:21072319 PMID:21873635 RGD:13792537 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
PMID:21873635
RGD PMID:23182941 PMID:21873635 RGD:13792537 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO MGI:2182627 (MGI:5913112|PMID:24430976) RGD PMID:24430976 MGI:5913112 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)
RGD PMID:16888103 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:89,246,175...89,247,132 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IDA
IBA
(PMID:24290141)
PMID:11060023
PMID:21873635
RGD PMID:24290141 PMID:11060023 PMID:21873635 RGD:8554284, RGD:13792537 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:5565574|PMID:24098492)
PMID:21873635
RGD PMID:24098492 PMID:12453151 PMID:21873635 MGI:5565574, RGD:2303129, RGD:13792537 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:3057045 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22939626 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA
(PMID:22452336)
PMID:21873635
RGD PMID:22452336 PMID:21873635 RGD:13792537 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO (MGI:5447922|PMID:18448665) RGD PMID:18448665 MGI:5447922 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:135,528,116...135,538,719
JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,249,878...120,269,174
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA
(PMID:28890335)
PMID:21873635
(MGI:3849242|PMID:19258318)
RGD PMID:19258318 PMID:28890335 PMID:21873635 MGI:3849242, RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IBA
ISO
PMID:21873635
(PMID:26416964)
RGD PMID:26416964 PMID:21873635 RGD:13792537 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO
IBA
ISS
(PMID:30568238), (PMID:30842662)
(MGI:6305034|PMID:30568238)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:30568238 PMID:30842662 PMID:21873635 GO_REF:0000024 MGI:6305034, RGD:13792537 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IEA
(PMID:24095276)
GO_REF:0000107
RGD
Ensembl
PMID:24095276 GO_REF:0000107 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:6296816 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
ISO
GO_REF:0000024
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IEA
ISS
IBA
(PMID:19056683)
GO_REF:0000107
GO_REF:0000024
PMID:21873635
RGD
Ensembl
UniProt
PMID:19056683 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:20529957)
Ensembl
RGD
PMID:20529957 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,884,253...27,912,709
Ensembl chr 6:27,884,680...27,912,649
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:28890335)
PMID:21873635
(MGI:3849242|PMID:19258318)
RGD PMID:19258318 PMID:28890335 PMID:21873635 MGI:3849242, RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000024
RGD
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:5888970 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:21975012) RGD PMID:21975012 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:5543871|PMID:23918802) RGD PMID:23918802 MGI:5543871 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
PMID:21873635
(PMID:23916833)
RGD PMID:23916833 PMID:21873635 RGD:13792537 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2450997 (MGI:5510937|PMID:23695157)
RGD PMID:23695157 PMID:21873635 MGI:5510937, RGD:13792537 NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 GO_REF:0000024 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
ISS
(PMID:25484098)
PMID:21873635
GO_REF:0000024
RGD
GO_Central
PMID:25484098 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tmem39a transmembrane protein 39a involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:31806350)
UniProt
RGD
PMID:31806350 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
(PMID:21072319)
GO_REF:0000107
RGD
Ensembl
PMID:21072319 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr17:81,496,669...81,668,180 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
ISS
(PMID:25495476)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
GO_REF:0000107
(MGI:5634888|PMID:21068542)
RGD
Ensembl
PMID:21068542 GO_REF:0000107 MGI:5634888 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:5605433 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5543871|PMID:23918802)
Ensembl
RGD
PMID:23918802 GO_REF:0000107 MGI:5543871 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:5605433 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg13 autophagy related 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:5605433 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg9a autophagy related 9A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO (MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:5565574 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Trappc8 trafficking protein particle complex subunit 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,103,874...12,180,422
Ensembl chr18:12,103,877...12,180,107
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within
ISO
IBA
ISS
(PMID:28561066)
PR:Q8C0J2 (MGI:5605433|PMID:24954904)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24954904 PMID:28561066 PMID:21873635 GO_REF:0000024 MGI:5605433, RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006774.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07006775.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ift20 intraflagellar transport 20 involved_in ISO (MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:5527012 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:5527012 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G LOC685933 hypothetical protein LOC685933 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:236,603,607...236,685,859
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:25578879)
Ensembl
RGD
PMID:25578879 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:108,215,823...108,218,996
Ensembl chr 8:108,215,814...108,218,996
JBrowse link
G Nprl3 NPR3-like, GATOR1 complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,355,361...15,395,812
Ensembl chr10:15,355,355...15,395,810
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO
IEA
(PMID:20545908)
GO_REF:0000107
RGD
Ensembl
PMID:20545908 GO_REF:0000107 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
(PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (MGI:5469257|PMID:23093945) RGD PMID:23093945 MGI:5469257 NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IEA
IBA
(PMID:22613832)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:22613832 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular component organization or biogenesis 6481
        cellular component biogenesis 3275
          cellular component assembly 2970
            organelle assembly 956
              autophagosome assembly 102
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 14
                positive regulation of autophagosome assembly 11
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 13
                regulation of autophagosome assembly + 38
                substrate localization to autophagosome 1
Path 2
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular component organization or biogenesis 6481
        cellular component organization 6235
          organelle organization 3752
            vacuole organization 201
              autophagosome organization 108
                autophagosome assembly 102
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 14
                  positive regulation of autophagosome assembly 11
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 13
                  regulation of autophagosome assembly + 38
                  substrate localization to autophagosome 1
paths to the root