Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:oligosaccharide metabolic process
go back to main search page
Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690


show annotations for term's descendants           Sort by:
oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUT3 fucosyltransferase 3 (Lewis blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:4,860,818...4,873,481
Ensembl chr19:5,793,527...5,794,645 		JBrowse link
G FUT4 fucosyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:89,550,637...89,566,111
Ensembl chr11:93,036,119...93,037,711 		JBrowse link
G FUT5 fucosyltransferase 5 involved_in ISO (PMID:1740457), (PMID:9737988) UniProt PMID:1740457 PMID:9737988 NCBI chr19:4,878,978...4,889,019 JBrowse link
G GLA galactosidase alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:90,600,412...90,610,594
Ensembl chr  X:100,732,311...100,742,280 		JBrowse link
G MOGS mannosyl-oligosaccharide glucosidase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr2A:74,527,710...74,532,319
Ensembl chr2A:76,033,692...76,038,561 		JBrowse link
G NAGA alpha-N-acetylgalactosaminidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:22,951,723...22,964,278
Ensembl chr22:41,035,622...41,046,431 		JBrowse link
G ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:92,857,170...92,944,262
Ensembl chr2A:107,964,544...108,044,068 		JBrowse link
G ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:75,290,496...75,851,683
Ensembl chr 1:77,377,482...77,930,220 		JBrowse link
G ST6GALNAC4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:99,027,846...99,037,025
Ensembl chr 9:127,699,013...127,708,515 		JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:76,080,706...76,284,836
Ensembl chr 1:78,167,280...78,366,180 		JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:99,005,336...99,025,296
Ensembl chr 9:127,677,841...127,697,880 		JBrowse link
G ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:63,972,127...64,112,083
Ensembl chr12:66,578,949...66,712,240 		JBrowse link
G ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:71,082,491...71,158,038
Ensembl chr15:90,279,509...90,354,173 		JBrowse link
G ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:50,741,928...50,760,032
Ensembl chr18:54,077,167...54,086,638 		JBrowse link
G ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:96,125,853...96,225,309
Ensembl chr 5:101,795,939...101,891,029 		JBrowse link
G ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:39,958,239...40,036,282
Ensembl chr18:43,492,025...43,569,857 		JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:17,632,154...17,771,252
Ensembl chr10:17,909,556...18,041,946 		JBrowse link
cellobiose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:24,025,383...24,079,779
Ensembl chr2B:139,855,605...139,908,764 		JBrowse link
cyclodextrin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPC1 NPC intracellular cholesterol transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21697390) Ensembl
MGI		 PMID:21697390 GO_REF:0000107 NCBI chr18:16,783,096...16,838,301
Ensembl chr18:20,409,040...20,463,623 		JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4GALT1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9155011) Ensembl
MGI		 PMID:9155011 GO_REF:0000107 NCBI chr 9:32,889,124...32,945,759
Ensembl chr 9:33,691,733...33,754,192 		JBrowse link
G LALBA lactalbumin alpha involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr12:40,178,422...40,180,897
Ensembl chr12:41,055,189...41,057,565 		JBrowse link
lactose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:24,025,383...24,079,779
Ensembl chr2B:139,855,605...139,908,764 		JBrowse link
maltose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MGAM maltase-glucoamylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:133,929,152...134,028,684
Ensembl chr 7:146,398,798...146,498,714 		JBrowse link
G SLC3A1 solute carrier family 3 member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:44,371,328...44,419,611
Ensembl chr2A:45,307,885...45,355,386 		JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (PMID:11278752) MGI PMID:11278752 NCBI chr 9:104,354,115...104,399,057
Ensembl chr 9:132,989,574...133,010,324 		JBrowse link
G B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) acts_upstream_of_or_within ISO (PMID:9417047) MGI PMID:9417047 NCBI chr 3:158,098,264...158,120,080 JBrowse link
G B3GALT1 beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:9582303)
(PMID:9417047)		 UniProt
MGI		 PMID:9417047 PMID:9582303 NCBI chr2B:54,550,248...55,124,358 JBrowse link
G B3GALT2 beta-1,3-galactosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9417047) Ensembl
MGI		 PMID:9417047 GO_REF:0000107 NCBI chr 1:168,638,291...168,645,893
Ensembl chr 1:172,928,889...172,934,683 		JBrowse link
G B4GALT1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9813328) Ensembl
MGI		 PMID:9813328 GO_REF:0000107 NCBI chr 9:32,889,124...32,945,759
Ensembl chr 9:33,691,733...33,754,192 		JBrowse link
G FUT1 fucosyltransferase 1 (H blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,747,261...45,753,436
Ensembl chr19:54,340,782...54,341,882 		JBrowse link
G FUT10 fucosyltransferase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:32,685,110...32,788,502
Ensembl chr 8:29,872,097...29,974,524 		JBrowse link
G FUT3 fucosyltransferase 3 (Lewis blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:4,860,818...4,873,481
Ensembl chr19:5,793,527...5,794,645 		JBrowse link
G FUT9 fucosyltransferase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:93,857,269...94,048,555
Ensembl chr 6:97,932,631...97,933,710 		JBrowse link
G LOC100991035 galactoside alpha-(1,2)-fucosyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,695,298...45,705,718
Ensembl chr19:54,294,501...54,295,532 		JBrowse link
G MPDU1 mannose-P-dolichol utilization defect 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:7,615,281...7,619,831
Ensembl chr17:7,601,561...7,610,378 		JBrowse link
G ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:54,577,578...54,637,626
Ensembl chr16:70,218,748...70,240,162 		JBrowse link
G ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:121,169,213...121,228,287
Ensembl chr11:125,079,260...125,141,737 		JBrowse link
G ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10788794) Ensembl
MGI
TreeGrafter		 PMID:10788794 GO_REF:0000107 GO_REF:0000118 NCBI chr17:70,705,223...70,721,046
Ensembl chr17:76,263,877...76,287,941 		JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) BHF-UCL PMID:12668675 MGI:5284811 NCBI chr 1:76,080,706...76,284,836
Ensembl chr 1:78,167,280...78,366,180 		JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,005,336...99,025,296
Ensembl chr 9:127,677,841...127,697,880 		JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTBS chitobiase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:2751306 GO_REF:0000118 RGD:2301430 NCBI chr 1:117,102,555...117,169,745
Ensembl chr 1:85,962,647...85,982,907 		JBrowse link
G GM2A ganglioside GM2 activator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9584189) Ensembl
MGI		 PMID:9584189 GO_REF:0000107 NCBI chr 5:146,680,277...146,696,505
Ensembl chr 5:152,680,696...152,697,018 		JBrowse link
G HEXB hexosaminidase subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10021458), (PMID:15748167) Ensembl
MGI		 PMID:10021458 PMID:15748167 GO_REF:0000107 NCBI chr 5:40,589,448...40,625,176
Ensembl chr 5:41,199,681...41,232,693 		JBrowse link
G LOC117979510 sialidase-4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:129,087,519...129,093,811 JBrowse link
G MAN2B1 mannosidase alpha class 2B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,208,319...12,228,934
Ensembl chr19:12,954,103...12,974,056 		JBrowse link
G MAN2B2 mannosidase alpha class 2B member 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:6,649,076...6,696,407 JBrowse link
G MAN2C1 mannosidase alpha class 2C member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:54,272,142...54,285,102
Ensembl chr15:73,868,134...73,880,704 		JBrowse link
G MANBA mannosidase beta involved_in ISO (PMID:3447593) MGI PMID:3447593 NCBI chr 4:95,055,206...95,184,727
Ensembl chr 4:105,718,124...105,846,251 		JBrowse link
G NEU1 neuraminidase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:31,522,392...31,526,097
Ensembl chr 6:32,409,217...32,412,971 		JBrowse link
G NEU2 neuraminidase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:120,260,420...120,262,930
Ensembl chr2B:239,174,532...239,176,917 		JBrowse link
G NEU3 neuraminidase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:70,047,878...70,070,303
Ensembl chr11:73,353,332...73,373,270 		JBrowse link
G NEU4 neuraminidase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:130,824,179...130,833,287 JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBP1 fructose-bisphosphatase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:65,695,082...65,731,628
Ensembl chr 9:93,825,150...93,860,968 		JBrowse link
G FBP2 fructose-bisphosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:65,650,460...65,685,794
Ensembl chr 9:93,780,956...93,815,872 		JBrowse link
sucrose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SI sucrase-isomaltase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:161,961,038...162,104,054
Ensembl chr 3:170,057,750...170,154,502 		JBrowse link
G SLC3A1 solute carrier family 3 member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:44,371,328...44,419,611
Ensembl chr2A:45,307,885...45,355,386 		JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PGGHG protein-glucosylgalactosylhydroxylysine glucosidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:284,672...291,814
Ensembl chr11:329,289...335,856 		JBrowse link
G TREH trehalase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:113,496,561...113,519,230
Ensembl chr11:117,426,597...117,448,445 		JBrowse link
trehalose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREH trehalase involved_in IEA InterPro GO_REF:0000002 NCBI chr11:113,496,561...113,519,230
Ensembl chr11:117,426,597...117,448,445 		JBrowse link
trehalose metabolism in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRAF B-Raf proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:132,651,908...132,855,422
Ensembl chr 7:145,138,510...145,327,115 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    metabolic process 10303
      organic substance metabolic process 9869
        carbohydrate metabolic process 550
          oligosaccharide metabolic process 53
            6-alpha-maltosylglucose metabolic process + 0
            ajugose metabolic process + 0
            cellodextrin metabolic process + 0
            cellooligosaccharide metabolic process + 0
            cellotriose metabolic process + 0
            cyclodextrin metabolic process + 1
            disaccharide metabolic process + 11
            lipopolysaccharide core region metabolic process + 0
            maltoheptaose metabolic process + 0
            oligosaccharide biosynthetic process + 19
            oligosaccharide catabolic process + 18
            raffinose metabolic process + 0
            stachyose metabolic process + 0
            verbascose metabolic process + 0
paths to the root