SI (sucrase-isomaltase) - Rat Genome Database

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Gene: SI (sucrase-isomaltase) Pan paniscus
Analyze
Symbol: SI
Name: sucrase-isomaltase
RGD ID: 11702913
Description: ENCODES a protein that exhibits beta-fructofuranosidase activity (ortholog); oligo-1,6-glucosidase activity (ortholog); INVOLVED IN carbohydrate utilization (ortholog); intestinal epithelial cell maturation (ortholog); response to cortisone (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen storage disease type III pathway; glycogen storage disease type IV pathway; ASSOCIATED WITH colitis (ortholog); congenital sucrase-isomaltase deficiency (ortholog); exocrine pancreatic insufficiency (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sucrase-isomaltase, intestinal
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22162,877,001 - 162,976,815 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13162,881,729 - 162,981,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03161,961,038 - 162,104,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13170,057,282 - 170,156,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3170,057,750 - 170,154,502 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22162,877,001 - 162,976,815 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13162,881,729 - 162,981,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03161,961,038 - 162,104,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13170,057,282 - 170,156,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3170,057,750 - 170,154,502 (-)Ensemblpanpan1.1panPan2
SI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383164,978,898 - 165,090,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3164,978,898 - 165,078,496 (-)EnsemblGRCh38hg38GRCh38
GRCh373164,696,686 - 164,796,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363166,179,380 - 166,278,976 (-)NCBINCBI36Build 36hg18NCBI36
Build 343166,179,388 - 166,278,984NCBI
Celera3163,095,850 - 163,195,264 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3162,066,552 - 162,166,109 (-)NCBIHuRef
CHM1_13164,659,546 - 164,759,127 (-)NCBICHM1_1
T2T-CHM13v2.03167,761,814 - 167,873,135 (-)NCBIT2T-CHM13v2.0
Sis
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39372,795,890 - 72,875,196 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl372,795,890 - 72,875,196 (-)EnsemblGRCm39 Ensembl
GRCm38372,888,557 - 72,967,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl372,888,557 - 72,967,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37372,692,482 - 72,770,788 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36372,976,489 - 73,055,789 (-)NCBIMGSCv36mm8
Celera373,012,488 - 73,086,863 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map332.59NCBI
Si
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82159,804,568 - 159,884,902 (-)NCBIGRCr8
mRatBN7.22157,505,893 - 157,586,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2157,506,342 - 157,585,260 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2164,628,371 - 164,709,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02162,678,862 - 162,759,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02157,311,634 - 157,392,265 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02170,220,794 - 170,301,348 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2170,221,245 - 170,301,348 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02189,563,145 - 189,643,699 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42163,520,975 - 163,601,280 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12163,470,937 - 163,551,243 (-)NCBI
Celera2151,764,945 - 151,845,208 (-)NCBICelera
RH 3.4 Map21027.6RGD
Cytogenetic Map2q32NCBI
Si
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544814,685,963 - 14,777,338 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544814,686,315 - 14,777,298 (-)NCBIChiLan1.0ChiLan1.0
SI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13430,284,869 - 30,373,749 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3430,284,858 - 30,373,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3439,346,430 - 39,434,804 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03430,347,263 - 30,435,400 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3430,346,966 - 30,434,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13430,290,443 - 30,378,872 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03430,241,911 - 30,330,433 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03430,511,922 - 30,599,883 (-)NCBIUU_Cfam_GSD_1.0
Si
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560296,367,610 - 96,445,267 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367071,153,538 - 1,228,220 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367071,153,538 - 1,228,220 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13104,296,283 - 104,379,478 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113104,296,281 - 104,379,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213112,716,702 - 112,812,308 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11524,480,060 - 24,582,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1524,482,865 - 24,582,394 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606333,458,175 - 33,557,570 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Si
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473042,984,431 - 43,112,819 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473042,984,277 - 43,112,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000032550   ⟹   ENSPPAP00000009903
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3170,057,750 - 170,154,502 (-)Ensembl
RefSeq Acc Id: XM_003817701   ⟹   XP_003817749
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22162,877,001 - 162,976,815 (-)NCBI
NHGRI_mPanPan13162,881,729 - 162,981,543 (-)NCBI
Mhudiblu_PPA_v03161,961,038 - 162,104,054 (-)NCBI
PanPan1.13170,057,282 - 170,156,983 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817749 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009903.1
RefSeq Acc Id: XP_003817749   ⟸   XM_003817701
- UniProtKB: A0A2R9A1Y1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000009903   ⟸   ENSPPAT00000032550
Protein Domains
P-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028177 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032550.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1180 UniProtKB/TrEMBL
  4.10.110.10 UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
  glycosyl hydrolase (family 31) UniProtKB/TrEMBL
InterPro Gal_mutarotase_sf_dom UniProtKB/TrEMBL
  Glyco_hydro_31 UniProtKB/TrEMBL
  Glyco_hydro_31_AS UniProtKB/TrEMBL
  Glyco_hydro_31_C UniProtKB/TrEMBL
  Glyco_hydro_31_CS UniProtKB/TrEMBL
  Glyco_hydro_31_N_dom UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
  P_trefoil_CS UniProtKB/TrEMBL
  P_trefoil_dom UniProtKB/TrEMBL
  P_trefoil_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100973298 UniProtKB/TrEMBL
NCBI Gene SI ENTREZGENE
PANTHER ALPHA-GLUCOSIDASE UniProtKB/TrEMBL
  P-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Gal_mutarotas_2 UniProtKB/TrEMBL
  Glyco_hydro_31 UniProtKB/TrEMBL
  Glyco_hydro_31_3rd UniProtKB/TrEMBL
  Trefoil UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F31_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F31_2 UniProtKB/TrEMBL
  P_TREFOIL_1 UniProtKB/TrEMBL
  P_TREFOIL_2 UniProtKB/TrEMBL
SMART SM00018 UniProtKB/TrEMBL
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
  SSF57492 UniProtKB/TrEMBL
  SSF74650 UniProtKB/TrEMBL
UniProt A0A2R9A1Y1 ENTREZGENE, UniProtKB/TrEMBL