SI (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 2 | 162,877,001 - 162,976,815 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 162,881,729 - 162,981,543 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 161,961,038 - 162,104,054 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 170,057,282 - 170,156,983 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 170,057,750 - 170,154,502 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SI (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 164,978,898 - 165,090,232 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 164,978,898 - 165,078,496 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 164,696,686 - 164,796,284 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 166,179,380 - 166,278,976 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 3 | 166,179,388 - 166,278,984 | NCBI | | | | | Celera | 3 | 163,095,850 - 163,195,264 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q26.1 | NCBI | | | | | HuRef | 3 | 162,066,552 - 162,166,109 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 164,659,546 - 164,759,127 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 167,761,814 - 167,873,135 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Sis (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 72,795,890 - 72,875,196 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 72,795,890 - 72,875,196 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 72,888,557 - 72,967,863 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 72,888,557 - 72,967,863 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 72,692,482 - 72,770,788 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 72,976,489 - 73,055,789 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 73,012,488 - 73,086,863 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | E3 | NCBI | | | | | cM Map | 3 | 32.59 | NCBI | | | | |
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Si (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 159,804,568 - 159,884,902 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 157,505,893 - 157,586,228 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 157,506,342 - 157,585,260 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 164,628,371 - 164,709,000 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 162,678,862 - 162,759,493 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 157,311,634 - 157,392,265 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 170,220,794 - 170,301,348 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 170,221,245 - 170,301,348 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 189,563,145 - 189,643,699 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 163,520,975 - 163,601,280 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 2 | 163,470,937 - 163,551,243 (-) | NCBI | | | | | Celera | 2 | 151,764,945 - 151,845,208 (-) | NCBI | | Celera | | | RH 3.4 Map | 2 | 1027.6 | RGD | | | | | Cytogenetic Map | 2 | q32 | NCBI | | | | |
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Si (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955448 | 14,685,963 - 14,777,338 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955448 | 14,686,315 - 14,777,298 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SI (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 34 | 30,284,869 - 30,373,749 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 34 | 30,284,858 - 30,373,780 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 34 | 39,346,430 - 39,434,804 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 34 | 30,347,263 - 30,435,400 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 34 | 30,346,966 - 30,434,636 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 34 | 30,290,443 - 30,378,872 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 34 | 30,241,911 - 30,330,433 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 34 | 30,511,922 - 30,599,883 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Si (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 96,367,610 - 96,445,267 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936707 | 1,153,538 - 1,228,220 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936707 | 1,153,538 - 1,228,220 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SI (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 13 | 104,296,283 - 104,379,478 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 104,296,281 - 104,379,558 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 112,716,702 - 112,812,308 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SI (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 15 | 24,480,060 - 24,582,468 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 15 | 24,482,865 - 24,582,394 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666063 | 33,458,175 - 33,557,570 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Si (Heterocephalus glaber - naked mole-rat) |
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