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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide biosynthetic process
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Accession:GO:0009312 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide anabolism;   oligosaccharide biosynthesis;   oligosaccharide formation;   oligosaccharide synthesis



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oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr 2:153,847,297...153,877,371
Ensembl chr 2:153,846,474...153,877,332
JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:9582303)
(MGI:1101659|PMID:9417047)
RGD PMID:9417047 PMID:9582303 MGI:1101659 NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419
JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
TAS
ISO
(MGI:1290117|PMID:9813328)
(PMID:2120039)
RGD PMID:2120039 PMID:9813328 PMID:12098497 MGI:1290117, RGD:1302270 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
RGD PMID:11179430 PMID:11733564 PMID:21873635 RGD:13792537 NCBI chr10:54,374,719...54,380,301
Ensembl chr10:54,374,725...54,380,447
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA
(PMID:9266697)
GO_REF:0000107
RGD
Ensembl
PMID:9266697 GO_REF:0000107 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:33,415,666...33,465,365
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within ISO (MGI:2153262|PMID:10788794) RGD PMID:10788794 MGI:2153262 NCBI chr10:101,972,656...101,983,053
Ensembl chr10:101,972,668...101,983,053
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 3:15,894,278...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2450889 (MGI:87365|PMID:9155011)
Ensembl
RGD
PMID:9155011 GO_REF:0000107 MGI:87365 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Lalba lactalbumin, alpha involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:129,625,752...129,628,022
Ensembl chr 7:129,625,535...129,628,061
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose-bisphosphatase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071
JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:2,236,088...2,253,702
Ensembl chr17:2,236,336...2,253,698
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      primary metabolic process 10467
        carbohydrate metabolic process 624
          oligosaccharide metabolic process 41
            oligosaccharide biosynthetic process 14
              6-alpha-maltosylglucose biosynthetic process 0
              disaccharide biosynthetic process + 4
              lipooligosaccharide biosynthetic process + 0
              lipopolysaccharide core region biosynthetic process 0
              raffinose family oligosaccharide biosynthetic process + 0
paths to the root