B3GALT1 (beta-1,3-galactosyltransferase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: B3GALT1 (beta-1,3-galactosyltransferase 1) Pan paniscus
Analyze
Symbol: B3GALT1
Name: beta-1,3-galactosyltransferase 1
RGD ID: 11822688
Description: ENCODES a protein that exhibits glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity (inferred); glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); INVOLVED IN galactosylceramide biosynthetic process (ortholog); oligosaccharide biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN endomembrane system (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta 1,3-galactosyltransferase polypeptide 1; Beta-1,3-GalTase 1; Beta3Gal-T1; Beta3GalT1; UDP-galactose:beta-N-acetyl-glucosamine-beta-1,3-galactosyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21369,934,878 - 70,509,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B69,949,742 - 70,524,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B54,550,248 - 55,124,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B172,023,342 - 172,591,939 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:15014171   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21369,934,878 - 70,509,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B69,949,742 - 70,524,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B54,550,248 - 55,124,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B172,023,342 - 172,591,939 (+)NCBIpanpan1.1PanPan1.1panPan2
B3GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382167,293,001 - 167,874,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2167,293,001 - 167,874,045 (+)EnsemblGRCh38hg38GRCh38
GRCh372168,149,511 - 168,730,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362168,383,428 - 168,435,612 (+)NCBINCBI36Build 36hg18NCBI36
Build 342168,500,688 - 168,552,873NCBI
Celera2162,284,031 - 162,336,209 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2160,555,235 - 160,607,422 (+)NCBIHuRef
CHM1_12168,681,070 - 168,733,250 (+)NCBICHM1_1
T2T-CHM13v2.02167,750,886 - 168,331,887 (+)NCBIT2T-CHM13v2.0
B3galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39267,395,528 - 67,953,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl267,396,215 - 67,953,033 (+)EnsemblGRCm39 Ensembl
GRCm38267,565,689 - 68,122,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl267,565,871 - 68,122,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37267,955,770 - 67,960,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36267,918,567 - 67,923,529 (+)NCBIMGSCv36mm8
Celera269,793,879 - 69,798,856 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.53NCBI
B3galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8372,661,410 - 73,234,447 (+)NCBIGRCr8
mRatBN7.2352,253,413 - 52,826,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl352,253,618 - 52,825,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx356,198,294 - 56,211,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0364,781,856 - 64,795,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0362,548,152 - 62,561,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0353,699,409 - 54,269,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl354,253,949 - 54,267,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0360,870,422 - 60,883,765 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4350,146,767 - 50,160,110 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1350,054,001 - 50,055,718 (+)NCBI
Celera352,380,792 - 52,394,125 (+)NCBICelera
Cytogenetic Map3q21NCBI
B3galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554496,452,189 - 6,553,158 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554496,452,189 - 7,007,329 (-)NCBIChiLan1.0ChiLan1.0
B3GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13612,263,162 - 12,766,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3612,761,821 - 12,762,801 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3612,336,938 - 12,775,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03612,384,303 - 12,888,766 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13612,470,747 - 12,974,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03612,449,918 - 12,953,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03612,567,513 - 13,071,386 (+)NCBIUU_Cfam_GSD_1.0
B3galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303129,484,141 - 130,096,334 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646911,589,492 - 11,590,472 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646911,586,710 - 12,133,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1574,335,112 - 74,339,380 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11573,772,833 - 74,340,060 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21582,904,443 - 83,311,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11052,792,505 - 53,368,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1053,366,522 - 53,367,499 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040146,179,848 - 146,733,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247875,578,168 - 5,579,148 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247875,040,161 - 5,582,911 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063595433   ⟹   XP_063451503
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21370,173,719 - 70,509,330 (+)NCBI
RefSeq Acc Id: XM_063595434   ⟹   XP_063451504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21369,934,878 - 70,509,330 (+)NCBI
RefSeq Acc Id: XM_063595435   ⟹   XP_063451505
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21370,173,719 - 70,509,330 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063451503 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451504 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451505 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA94494 (Get FASTA)   NCBI Sequence Viewer  
  Q7JK25 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063451504   ⟸   XM_063595434
RefSeq Acc Id: XP_063451505   ⟸   XM_063595435
RefSeq Acc Id: XP_063451503   ⟸   XM_063595433


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 3.90.550.50 UniProtKB/Swiss-Prot
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report pps:100986605 UniProtKB/Swiss-Prot
NCBI Gene B3GALT1 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR11214 UniProtKB/Swiss-Prot
Pfam Galactosyl_T UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt B3GT1_PANPA UniProtKB/Swiss-Prot, ENTREZGENE