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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome assembly
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Accession:GO:0006334 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Synonyms:exact_synonym: nucleosome modeling
 related_synonym: histone chaperone


show annotations for term's descendants           Sort by:
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:69,075,972...69,108,178
Ensembl chr 9:97,207,823...97,228,542 		JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11897662) MGI
Ensembl		 PMID:11897662 GO_REF:0000107 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471 		JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12842904) Ensembl
MGI		 PMID:12842904 GO_REF:0000107 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917 		JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486 		JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473 		JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031 		JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,816,411...4,984,760
Ensembl chr22:22,927,572...23,070,165 		JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339 		JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575 		JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,180,420...137,185,657
Ensembl chr 8:140,267,024...140,270,757 		JBrowse link
G DAXX death domain associated protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717 		JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:69,790,478...69,796,518
Ensembl chr10:72,248,454...72,255,339 		JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:25990725)
(PMID:27552915)		 UniProt PMID:25990725 PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G H1-1 H1.1 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,850,443...25,851,223
Ensembl chr 6:26,508,481...26,509,128 		JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657 		JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:26,068,439...26,071,115
Ensembl chr 6:26,729,239...26,729,904 		JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,992,845...26,006,585
Ensembl chr 6:26,652,151...26,652,810
Ensembl chr 6:26,652,151...26,652,810 		JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:27,697,071...27,697,949
Ensembl chr 6:28,371,430...28,372,110 		JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,941,055...25,943,565
Ensembl chr 6:26,600,454...26,601,083 		JBrowse link
G H3-4 H3.4 histone, cluster member involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:203,826,506...203,827,872
Ensembl chr 1:209,038,009...209,038,419 		JBrowse link
G H4C7 H4 clustered histone 7 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:26,741,644...26,741,940 JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HMGB2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952 		JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:19,691,173...19,736,062
Ensembl chr 1:20,736,259...20,780,690 		JBrowse link
G KAT6A lysine acetyltransferase 6A involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:41,173,833...41,296,547
Ensembl chr 8:38,625,156...38,741,538 		JBrowse link
G KAT6B lysine acetyltransferase 6B involved_in IEA InterPro GO_REF:0000002 NCBI chr10:71,354,585...71,561,572
Ensembl chr10:74,035,496...74,223,975 		JBrowse link
G LOC100970414 histone H3.3A involved_in ISO (PMID:25615412)
(PMID:21636898)		 UniProt PMID:21636898 PMID:25615412 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447 		JBrowse link
G LOC100970460 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:18,720,235...18,722,440
Ensembl chr22:36,551,693...36,552,277 		JBrowse link
G LOC100974453 protein SET-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:92,367,088...92,368,896 JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194 		JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G LOC100976584 histone H4 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr12:14,754,453...14,776,508
Ensembl chr12:15,173,609...15,173,920 		JBrowse link
G LOC100977781 protein HIRA involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084 		JBrowse link
G LOC100979289 histone H2B type 1-A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17261847) Ensembl
MGI		 PMID:17261847 GO_REF:0000107 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780 		JBrowse link
G LOC100981824 histone H4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556 		JBrowse link
G LOC100985978 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,720,161...26,720,571 		JBrowse link
G LOC100988671 histone H3.3A involved_in ISO (PMID:25615412)
(PMID:21636898)		 UniProt PMID:21636898 PMID:25615412 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106 		JBrowse link
G LOC100990341 protein SET-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:153,042,682...153,043,649 JBrowse link
G LOC100991861 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542 		JBrowse link
G LOC100992212 histone H4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:25,858,656...25,860,724
Ensembl chr12:15,173,609...15,173,920 		JBrowse link
G LOC100992822 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,364,612...144,365,333 JBrowse link
G LOC100993446 histone H1.8 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243 		JBrowse link
G LOC103783476 histone H4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:27,656,871...27,657,827 JBrowse link
G LOC103784296 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:26,085,157...26,085,690 JBrowse link
G LOC112438809 histone H4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:125,176,823...125,184,236 JBrowse link
G LOC112440134 histone H4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117975185 histone H4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G LOC117977735 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,849,954...144,850,606 JBrowse link
G LOC117980349 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 1:125,196,255...125,197,305 JBrowse link
G LOC129397928 histone H3.1 involved_in IEA Ensembl GO_REF:0000107
G MCM2 minichromosome maintenance complex component 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10531422) Ensembl
MGI		 PMID:10531422 GO_REF:0000107 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641 		JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:2,366,988...2,409,598
Ensembl chr16:3,543,418...3,586,299 		JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:73,549,887...73,589,621
Ensembl chr12:76,402,906...76,441,815 		JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:82,895,237...82,897,938
Ensembl chr  X:93,057,803...93,059,323 		JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:2,970,001...3,018,239
Ensembl chr11:2,997,726...3,044,848 		JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737 		JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656 		JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951 		JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518 		JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091 		JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:99,806,876...99,819,825
Ensembl chr 9:128,473,806...128,484,563 		JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:143,628,076...143,751,370
Ensembl chr 6:148,388,329...148,457,023 		JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809 		JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23752591) Ensembl
MGI		 PMID:23752591 GO_REF:0000107 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419 		JBrowse link
G TSPYL1 TSPY like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:114,079,317...114,082,540
Ensembl chr 6:118,226,765...118,228,081 		JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:45,293,843...45,300,307
Ensembl chr  X:53,400,290...53,409,275 		JBrowse link
G TSPYL4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:114,052,540...114,056,709
Ensembl chr 6:118,201,097...118,202,341 		JBrowse link
G TSPYL6 TSPY like 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr2A:54,405,397...54,408,979
Ensembl chr2A:55,553,142...55,554,362
Ensembl chr2A:55,553,142...55,554,362 		JBrowse link
G UBN1 ubinuclein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    cellular process 15485
      cellular component organization or biogenesis 6637
        cellular component organization 6423
          protein-containing complex organization 2245
            protein-DNA complex organization 750
              chromatin organization 680
                nucleosome assembly 74
                  positive regulation of nucleosome disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 16447
    cellular process 15485
      cellular component organization or biogenesis 6637
        cellular component organization 6423
          protein-containing complex organization 2245
            protein-DNA complex organization 750
              chromatin organization 680
                chromatin remodeling 587
                  nucleosome organization 95
                    nucleosome assembly 74
                      positive regulation of nucleosome disassembly 0
paths to the root