LOC100992212 (histone H4) - Rat Genome Database

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Gene: LOC100992212 (histone H4) Pan paniscus
Analyze
Symbol: LOC100992212 (Ensembl: H4-16)
Name: histone H4 (Ensembl:H4 histone 16)
RGD ID: 11871873
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN negative regulation of megakaryocyte differentiation (inferred); nucleosome assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN CENP-A containing nucleosome (ortholog); nucleosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Squirrel
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,670,608 - 40,673,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,672,040 - 36,674,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,858,656 - 25,860,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,518,248 - 26,518,752 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,173,609 - 15,173,920 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100992212
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,670,608 - 40,673,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,672,040 - 36,674,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,858,656 - 25,860,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,518,248 - 26,518,752 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,173,609 - 15,173,920 (-)Ensemblpanpan1.1panPan2
H4C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,026,896 - 26,027,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,026,896 - 26,027,283 (-)EnsemblGRCh38hg38GRCh38
GRCh37626,027,124 - 26,027,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,135,103 - 26,135,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 34626,135,102 - 26,135,459NCBI
Celera627,254,348 - 27,254,704 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,970,187 - 25,970,543 (-)NCBIHuRef
CHM1_1626,029,397 - 26,029,753 (-)NCBICHM1_1
T2T-CHM13v2.0625,892,832 - 25,893,219 (-)NCBIT2T-CHM13v2.0
H4c14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,520,468 - 186,520,863 (-)NCBIGRCr8
mRatBN7.22183,831,601 - 183,831,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,825,994 - 183,832,048 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,495,168 - 191,495,563 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,294,310 - 189,294,705 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,127,704 - 184,128,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,411,955 - 198,412,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,411,955 - 198,412,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,897,714 - 217,898,109 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,075,740 - 191,076,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,038,548 - 191,038,860 (-)NCBI
Celera2176,359,156 - 176,359,551 (-)NCBICelera
Cytogenetic Map2q34NCBI
H4C14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,129,585 - 59,130,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,129,682 - 59,129,993 (+)EnsemblCanFam3.1canFam3CanFam3.1
LOC106145261
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,732,895 - 1,733,315 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366711,888,128 - 1,888,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034961596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000003741   ⟹   ENSPPAP00000000800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl626,700,268 - 26,700,579 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000017050   ⟹   ENSPPAP00000003696
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1215,173,609 - 15,173,920 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000018290   ⟹   ENSPPAP00000003947
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl626,513,070 - 26,513,381 (+)Ensembl
RefSeq Acc Id: XM_034961596   ⟹   XP_034817487
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2540,670,608 - 40,673,187 (-)NCBI
NHGRI_mPanPan1636,672,040 - 36,674,619 (-)NCBI
Mhudiblu_PPA_v0625,858,656 - 25,860,724 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034817487 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034817487   ⟸   XM_034961596
- UniProtKB: A0A2R8ZRP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000000800   ⟸   ENSPPAT00000003741
RefSeq Acc Id: ENSPPAP00000003947   ⟸   ENSPPAT00000018290
RefSeq Acc Id: ENSPPAP00000003696   ⟸   ENSPPAT00000017050


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000003443 Ensembl
  ENSPPAG00000015575 Ensembl
  ENSPPAG00000016695 Ensembl
  ENSPPAG00000019882 ENTREZGENE
NCBI Gene LOC100992212 ENTREZGENE
UniProt A0A2R8ZRP3 ENTREZGENE