SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5) - Rat Genome Database

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Gene: SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5) Pan paniscus
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Symbol: SMARCA5
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
RGD ID: 11683688
Description: ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); chromatin organization (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); Dwarfism (ortholog); intellectual disability (ortholog); FOUND IN ACF complex (ortholog); B-WICH complex (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14147,174,145 - 147,214,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4147,174,060 - 147,214,809 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04135,874,888 - 135,917,096 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SMARCA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14147,174,145 - 147,214,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4147,174,060 - 147,214,809 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04135,874,888 - 135,917,096 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SMARCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384143,513,702 - 143,557,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4143,513,702 - 143,557,486 (+)EnsemblGRCh38hg38GRCh38
GRCh374144,434,855 - 144,478,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364144,654,066 - 144,694,017 (+)NCBINCBI36Build 36hg18NCBI36
Build 344144,792,220 - 144,832,171NCBI
Celera4141,764,634 - 141,804,574 (+)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4140,164,707 - 140,208,721 (+)NCBIHuRef
CHM1_14144,411,831 - 144,455,839 (+)NCBICHM1_1
T2T-CHM13v2.04146,830,915 - 146,874,681 (+)NCBIT2T-CHM13v2.0
Smarca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39881,426,572 - 81,466,088 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl881,425,136 - 81,466,126 (-)EnsemblGRCm39 Ensembl
GRCm38880,699,943 - 80,739,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl880,698,507 - 80,739,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv37883,223,842 - 83,263,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36883,595,689 - 83,635,205 (-)NCBIMGSCv36mm8
Celera884,973,840 - 85,010,486 (-)NCBICelera
Cytogenetic Map8C2NCBI
Smarca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21927,271,918 - 27,304,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1927,271,148 - 27,304,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1934,130,292 - 34,162,927 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01934,784,348 - 34,816,983 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01937,004,248 - 37,036,904 (+)NCBIRnor_WKY
Rnor_6.01930,936,703 - 30,969,454 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1930,936,703 - 30,969,454 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01941,840,174 - 41,873,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41929,122,301 - 29,155,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11929,126,640 - 29,160,112 (+)NCBI
Celera1926,788,347 - 26,821,018 (+)NCBICelera
Cytogenetic Map19q11NCBI
Smarca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547112,203,318 - 12,237,333 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547112,206,462 - 12,240,219 (-)NCBIChiLan1.0ChiLan1.0
SMARCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,731,147 - 42,771,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,731,426 - 42,770,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1543,114,109 - 43,154,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,391,125 - 43,431,354 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,391,132 - 43,431,358 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,668,391 - 42,708,501 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01542,752,138 - 42,792,336 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01543,023,307 - 43,063,521 (+)NCBIUU_Cfam_GSD_1.0
Smarca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530147,420,476 - 47,452,913 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365354,856,672 - 4,890,225 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365354,857,816 - 4,890,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl884,184,576 - 84,224,871 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1884,184,572 - 84,224,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2889,339,602 - 89,379,481 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1790,366,359 - 90,406,707 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl790,370,305 - 90,410,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603769,966,455 - 70,007,230 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,569,744 - 3,611,104 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003820704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000033294   ⟹   ENSPPAP00000010642
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4147,174,060 - 147,213,628 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033298   ⟹   ENSPPAP00000010646
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4147,174,145 - 147,214,809 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033300   ⟹   ENSPPAP00000010648
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4147,174,358 - 147,213,628 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033301   ⟹   ENSPPAP00000010649
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4147,177,725 - 147,213,628 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000033306   ⟹   ENSPPAP00000010654
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4147,181,897 - 147,206,484 (+)Ensembl
RefSeq Acc Id: XM_003820704   ⟹   XP_003820752
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.14147,174,145 - 147,214,809 (+)NCBI
Mhudiblu_PPA_v04135,874,888 - 135,917,096 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820752 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003820752   ⟸   XM_003820704
- UniProtKB: A0A2R9A065 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000010642   ⟸   ENSPPAT00000033294
RefSeq Acc Id: ENSPPAP00000010646   ⟸   ENSPPAT00000033298
RefSeq Acc Id: ENSPPAP00000010654   ⟸   ENSPPAT00000033306
RefSeq Acc Id: ENSPPAP00000010649   ⟸   ENSPPAT00000033301
RefSeq Acc Id: ENSPPAP00000010648   ⟸   ENSPPAT00000033300

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000010642.1 UniProtKB/TrEMBL
  ENSPPAP00000010646 ENTREZGENE
  ENSPPAP00000010646.1 UniProtKB/TrEMBL
  ENSPPAP00000010648.1 UniProtKB/TrEMBL
  ENSPPAP00000010649.1 UniProtKB/TrEMBL
  ENSPPAP00000010654.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033294.1 UniProtKB/TrEMBL
  ENSPPAT00000033298.1 UniProtKB/TrEMBL
  ENSPPAT00000033300.1 UniProtKB/TrEMBL
  ENSPPAT00000033301.1 UniProtKB/TrEMBL
  ENSPPAT00000033306.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.30 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  ISWI_HAND-dom UniProtKB/TrEMBL
  ISWI_HAND-dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report pps:100992321 UniProtKB/TrEMBL
NCBI Gene SMARCA5 ENTREZGENE
Pfam HAND UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF101224 UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9A065 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A088_PANPA UniProtKB/TrEMBL
  A0A2R9A1C9_PANPA UniProtKB/TrEMBL
  A0A2R9A4I5_PANPA UniProtKB/TrEMBL
  A0A2R9A4J0_PANPA UniProtKB/TrEMBL