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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin organization
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Accession:GO:0006325 term browser browse the term
Definition:Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
Synonyms:exact_synonym: chromatin organisation;   establishment or maintenance of chromatin architecture
 related_synonym: chromatin modification
 alt_id: GO:0016568


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chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053402.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:104,675,173...104,675,457 JBrowse link
G AABR07053884.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:132,282,628...132,282,879 JBrowse link
G AABR07057877.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:91,756,569...91,756,865 JBrowse link
G AABR07068728.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 9:116,652,530...116,981,172 JBrowse link
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:10,424,674...10,439,010
Ensembl chr14:10,424,674...10,439,003
JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO PR:Q6DIC0 (MGI:1934781|PMID:11318604) RGD PMID:11318604 MGI:1934781 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Atad2 ATPase family, AAA domain containing 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:97,984,754...98,027,379
Ensembl chr 7:97,984,862...98,026,052
JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,792,720...19,798,886
Ensembl chr16:19,792,838...19,798,894
JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:25,666,654...26,135,888
Ensembl chr 6:25,666,655...26,051,229
JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Brd3 bromodomain containing 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:5,995,204...6,054,467
Ensembl chr 3:5,997,315...6,054,483
JBrowse link
G Brdt bromodomain testis associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:3,437,876...3,462,613
Ensembl chr14:3,405,995...3,462,629
JBrowse link
G Cbx7 chromobox 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:121,136,067...121,153,503
Ensembl chr 7:121,136,058...121,153,383
JBrowse link
G Cdan1 codanin 1 involved_in ISO (PMID:21364188) RGD PMID:21364188 NCBI chr 3:112,660,839...112,676,596
Ensembl chr 3:112,663,383...112,676,556
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:134,757,934...134,873,053
Ensembl chr 1:134,757,934...134,871,167
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:157,612,531...157,645,660
Ensembl chr 4:157,612,536...157,645,659
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:156,937,746...157,099,328
Ensembl chr 3:156,937,733...157,099,306
JBrowse link
G Chd9 chromodomain helicase DNA binding protein 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:17,364,969...17,517,757
Ensembl chr19:17,366,828...17,494,585
JBrowse link
G Dapk3 death-associated protein kinase 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:11,392,436...11,400,855
Ensembl chr 7:11,392,437...11,400,805
JBrowse link
G Dek DEK proto-oncogene involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:17,965,872...17,987,836
Ensembl chr17:17,965,881...17,987,834
JBrowse link
G Dnajc2 DnaJ heat shock protein family (Hsp40) member C2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:9,881,505...9,908,693
Ensembl chr 4:9,882,904...9,908,689
JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in ISO (PMID:12004135) RGD PMID:12004135 NCBI chr 3:1,966,974...2,123,858
Ensembl chr 3:1,960,957...2,123,820
JBrowse link
G Fam50a family with sequence similarity 50, member A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,392,646...156,399,763
Ensembl chr  X:156,392,630...156,399,760
Ensembl chr 4:156,392,630...156,399,760
JBrowse link
G Fam50b family with sequence similarity 50, member B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:30,864,189...30,883,427
Ensembl chr17:30,864,167...30,865,419
JBrowse link
G Foxa2 forkhead box A2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Foxa3 forkhead box A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:79,921,292...79,930,219
Ensembl chr 1:79,920,752...79,930,263
JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (MGI:4936795|PMID:21118898) RGD PMID:21118898 MGI:4936795 NCBI chr  X:74,440,265...74,484,164 JBrowse link
G Gatad1 GATA zinc finger domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:27,647,005...27,658,533
Ensembl chr 4:27,647,335...27,657,167
JBrowse link
G Gpx4 glutathione peroxidase 4 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:1934492|PMID:11344099)
UniProt
RGD
PMID:11344099 GO_REF:0000024 MGI:1934492 NCBI chr 7:12,516,357...12,519,154
Ensembl chr 7:12,516,352...12,519,154
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H2ac1 H2A clustered histone 1 acts_upstream_of_or_within ISO (MGI:5569674|PMID:24506885) RGD PMID:24506885 MGI:5569674 NCBI chr17:43,422,454...43,422,846
Ensembl chr17:43,422,454...43,422,846
JBrowse link
G H2bc1 H2B clustered histone 1 acts_upstream_of_or_within ISO (MGI:5569674|PMID:24506885) RGD PMID:24506885 MGI:5569674 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G Hdac5 histone deacetylase 5 TAS RGD PMID:12896970 RGD:1304416 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac7 histone deacetylase 7 involved_in TAS PMID:12711221 UniProt PMID:12711221 RGD:8553516 NCBI chr 7:139,280,396...139,319,108
Ensembl chr 7:139,281,187...139,318,455
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3590648 (MGI:3590574|PMID:12660172)
RGD PMID:12660172, PMID:21873635 MGI:3590574, RGD:13792537 NCBI chr11:36,474,028...36,479,947
Ensembl chr11:36,474,840...36,479,868
Ensembl chr11:36,474,840...36,479,868
JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:152,195,359...152,198,813
Ensembl chr 5:152,195,361...152,198,813
JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:90,628,203...90,665,055
Ensembl chr 8:90,628,209...90,664,554
JBrowse link
G Hmgn4 high mobility group nucleosomal binding domain 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:104,675,173...104,675,525 JBrowse link
G Hmgn5 high mobility group nucleosome binding domain 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5588022 (MGI:5578301|PMID:24392144)
RGD PMID:24392144, PMID:21873635 MGI:5578301, RGD:13792537 NCBI chr  X:80,134,557...80,142,902
Ensembl chr  X:80,134,557...80,142,902
JBrowse link
G Hmgn5b high mobility group nucleosome binding domain 5B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:124,477,164...124,485,737
Ensembl chr 1:124,477,164...124,485,724
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Ing1 inhibitor of growth family, member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:83,277,055...83,278,120
Ensembl chr16:83,276,273...83,278,119
JBrowse link
G Ing2 inhibitor of growth family, member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:47,714,756...47,725,836
Ensembl chr16:47,717,951...47,725,836
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) RGD PMID:17540172 NCBI chr 3:159,316,580...159,348,914
Ensembl chr 3:159,321,310...159,347,631
JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:122,896,860...122,918,025
Ensembl chr 7:122,896,871...122,918,036
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:19,998,776...20,097,298
Ensembl chr 1:20,022,793...20,097,099
JBrowse link
G LOC100361388 high-mobility group nucleosomal binding domain 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:132,282,628...132,285,148 JBrowse link
G LOC100363319 high mobility group nucleosomal binding domain 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:91,756,569...91,756,835 JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 involved_in ISO (PMID:20932478) RGD PMID:20932478 NCBI chr12:23,574,234...23,587,262
Ensembl chr12:23,574,187...23,587,276
JBrowse link
G Mbtd1 mbt domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:81,588,233...81,645,532
Ensembl chr10:81,592,114...81,642,663
JBrowse link
G Mos MOS proto-oncogene, serine/threonine kinase involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:80462|PMID:8631259)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:8631259 GO_REF:0000024 GO_REF:0000107 MGI:80462 NCBI chr 5:16,746,085...16,747,392
Ensembl chr 5:16,746,197...16,747,222
JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:2,656,776...2,701,027
Ensembl chr14:2,658,267...2,700,977
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO (MGI:5576396|PMID:24931609), (MGI:5695791|PMID:26205492) RGD PMID:24931609 PMID:26205492 MGI:5576396 MGI:5695791 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:159,260,675...159,293,906
Ensembl chr 5:159,260,675...159,293,673
JBrowse link
G Phf1 PHD finger protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,526,926...5,531,940
Ensembl chr20:5,526,961...5,531,941
JBrowse link
G Phf19 PHD finger protein 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,957,136...13,978,283
Ensembl chr 3:13,957,136...13,978,224
JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20347427)
UniProt
RGD
PMID:20347427, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:12,331,288...12,348,263
Ensembl chr 7:12,331,416...12,346,475
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:33,648,682...33,665,821
Ensembl chr  X:33,648,682...33,665,821
JBrowse link
G Rbl1 RB transcriptional corepressor like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:153,263,692...153,321,351
Ensembl chr 3:153,263,692...153,321,352
JBrowse link
G Rbl2 RB transcriptional corepressor like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:17,300,088...17,346,865
Ensembl chr19:17,300,089...17,346,808
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (MGI:6161518|PMID:29813070) RGD PMID:29813070 MGI:6161518 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Satb1 SATB homeobox 1 acts_upstream_of_or_within ISO (MGI:2658695|PMID:12692553) RGD PMID:12692553 MGI:2658695 NCBI chr 9:2,181,135...2,277,949
Ensembl chr 9:2,190,915...2,274,629
JBrowse link
G Sfmbt1 Scm-like with four mbt domains 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:6,775,648...6,896,155
Ensembl chr16:6,779,281...6,895,299
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Spin1 spindlin 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:884,854...930,527
Ensembl chr16:884,861...930,527
JBrowse link
G Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:175,426,754...175,445,222
Ensembl chr 3:175,426,752...175,445,222
JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:75,032,365...75,038,547
Ensembl chr10:75,032,365...75,038,547
JBrowse link
G Tdrd3 tudor domain containing 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:70,732,164...70,864,855
Ensembl chr15:70,790,125...70,859,185
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:21,153,998...21,155,652
Ensembl chr14:21,154,000...21,155,652
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a involved_in ISO (MGI:6161518|PMID:29813070) RGD PMID:29813070 MGI:6161518 NCBI chr 7:11,429,266...11,446,119
Ensembl chr 7:11,432,049...11,444,786
JBrowse link
G Zfp462 zinc finger protein 462 acts_upstream_of_or_within ISO (MGI:4440672|PMID:20219459) RGD PMID:20219459 MGI:4440672 NCBI chr 5:71,679,841...71,824,077
Ensembl chr 5:71,742,911...71,823,139
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:3789238|PMID:16079796) RGD PMID:16079796 MGI:3789238 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
ATP-dependent chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:66,238,947...66,241,440 JBrowse link
G Actl6a actin-like 6A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Actl6b actin-like 6B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G Actr5 actin related protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:155,118,567...155,132,073
Ensembl chr 3:155,119,042...155,131,829
JBrowse link
G Actr8 actin related protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,047,977...6,062,586
Ensembl chr16:6,048,004...6,062,550
JBrowse link
G Arid1a AT-rich interaction domain 1A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5466629|PMID:23129809)
RGD PMID:23129809, PMID:21873635 MGI:5466629, RGD:13792537 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Arid1b AT-rich interaction domain 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:45,923,119...46,232,301
Ensembl chr 1:45,923,222...46,234,874
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader involved_in ISO
IBA
(PMID:15640247)
PMID:21873635
RGD PMID:15640247, PMID:21873635 RGD:13792537 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 involved_in ISO (PMID:30397230) RGD PMID:30397230 NCBI chr10:55,943,467...55,970,417
Ensembl chr10:55,943,446...55,965,216
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in ISO
ISS
(PMID:18378692)
GO_REF:0000024
RGD
UniProt
PMID:18378692 GO_REF:0000024 NCBI chr15:28,612,932...28,672,574
Ensembl chr15:28,612,932...28,672,569
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:29203878) RGD PMID:29203878 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Ino80b INO80 complex subunit B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,954,612...113,957,774
Ensembl chr 4:113,954,613...113,957,774
Ensembl chr 4:113,954,613...113,957,774
JBrowse link
G LOC103694314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:29,798,912...29,803,955
Ensembl chr19:29,800,855...29,802,083
JBrowse link
G Pbrm1 polybromo 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:7,103,714...7,202,899
Ensembl chr16:7,103,998...7,200,362
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 involved_in ISO (PMID:15640247) RGD PMID:15640247 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:244,615,811...244,783,736
Ensembl chr 1:244,615,821...244,782,706
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IDA
IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:9001244, PMID:21873635 GO_REF:0000002, RGD:634124, RGD:13792537 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO
IBA
(PMID:15543136)
PMID:21873635
RGD PMID:15543136, PMID:21873635 RGD:13792537 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:22960744)
UniProt
RGD
PMID:22960744, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:94,451,866...94,460,732
Ensembl chr10:94,451,866...94,460,732
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,957,764...199,007,576
Ensembl chr 1:198,960,542...199,007,347
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,429,526...15,603,197
Ensembl chr17:15,429,708...15,603,199
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) RGD PMID:19410544 PMID:19410545 NCBI chr 9:95,347,739...95,362,228
Ensembl chr 9:95,349,086...95,362,014
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:118,476,410...118,541,928
Ensembl chr 5:118,476,430...118,673,780
JBrowse link
G Mis18a MIS18 kinetochore protein A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5441069 (MGI:5438906|PMID:22516971)
RGD PMID:22516971, PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:30,880,231...30,893,262
Ensembl chr11:30,879,887...30,893,310
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,413,662...111,422,320
Ensembl chr 3:111,416,536...111,422,203
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 involved_in ISO (PMID:22407294) RGD PMID:22407294 NCBI chr 3:112,660,839...112,676,596
Ensembl chr 3:112,663,383...112,676,556
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) RGD PMID:18650382 MGI:3807115 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:173,659,796...173,672,699
Ensembl chr 5:173,660,921...173,672,459
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B acts_upstream_of_or_within ISO (MGI:2179578|PMID:11980720) RGD PMID:11980720 MGI:2179578 NCBI chr12:24,478,882...24,536,851
Ensembl chr12:24,478,898...24,537,313
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 acts_upstream_of_or_within ISO (MGI:1333986|PMID:10204490) RGD PMID:10204490 MGI:1333986 NCBI chr10:55,943,467...55,970,417
Ensembl chr10:55,943,446...55,965,216
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 acts_upstream_of_or_within ISO (MGI:2179578|PMID:11980720) RGD PMID:11980720 MGI:2179578 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Suv39h2 suppressor of variegation 3-9 homolog 2 involved_in ISO (PMID:10949293) RGD PMID:10949293 NCBI chr17:78,762,897...78,782,016
Ensembl chr17:78,762,991...78,782,016
JBrowse link
chromatin maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17352692)
Ensembl
UniProt
RGD
PMID:17352692 GO_REF:0000024 GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
chromatin organization involved in regulation of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:16,991,496...17,027,563 JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in IEA
ISO
GO_REF:0000107
(MGI:6508514|PMID:30171019)
Ensembl
RGD
PMID:30171019 GO_REF:0000107 MGI:6508514 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:26,869,828...26,870,421 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:28,072,014...28,166,296 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:118,996,333...118,998,300 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,951,747...4,952,584 JBrowse link
G Actl6a actin-like 6A involved_in
acts_upstream_of_or_within
ISO (PMID:11726552)
(MGI:1314932|PMID:9845365)
RGD PMID:9845365 PMID:11726552 MGI:1314932 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Actl6b actin-like 6B involved_in ISO (PMID:11726552) RGD PMID:11726552 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G Arid1a AT-rich interaction domain 1A involved_in
acts_upstream_of_or_within
ISO (PMID:11726552)
MGI:3796520 (MGI:3789431|PMID:18448678)
RGD PMID:11726552 PMID:18448678 MGI:3789431 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:20651253)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20651253 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:75,793,223...75,873,854
Ensembl chr 6:75,793,960...75,874,235
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B acts_upstream_of_or_within ISO (MGI:2179578|PMID:11980720) RGD PMID:11980720 MGI:2179578 NCBI chr12:24,478,882...24,536,851
Ensembl chr12:24,478,898...24,537,313
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A acts_upstream_of_or_within ISO MGI:1935129 (MGI:2149896|PMID:11532953) RGD PMID:11532953 MGI:2149896 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Bptf bromodomain PHD finger transcription factor involved_in ISO (PMID:14609955) RGD PMID:14609955 NCBI chr10:95,248,573...95,350,162
Ensembl chr10:95,250,294...95,349,789
JBrowse link
G Brd4 bromodomain containing 4 involved_in ISO (PMID:23728299) RGD PMID:23728299 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Brdt bromodomain testis associated involved_in
acts_upstream_of_or_within
IDA
ISO
IEA
(MGI:5430881|PMID:19794495)
(MGI:2668282|PMID:12861021)
GO_REF:0000107
RGD
Ensembl
PMID:12861021 PMID:19794495, PMID:22215678 GO_REF:0000107 MGI:2668282 MGI:5430881, RGD:9586361 NCBI chr14:3,437,876...3,462,613
Ensembl chr14:3,405,995...3,462,629
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3616364|PMID:16415155) RGD PMID:16415155 MGI:3616364 NCBI chr 1:57,692,828...57,756,762
Ensembl chr 1:57,692,836...57,755,485
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like involved_in ISO
IBA
(PMID:19661379)
PMID:21873635
RGD PMID:19661379, PMID:21873635 RGD:13792537 NCBI chr 2:199,714,044...199,792,270
Ensembl chr 2:199,716,713...199,771,896
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:2176467|MGI:4433295 (MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:5694290 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Daxx death-domain associated protein involved_in IEA
ISO
GO_REF:0000107
(PMID:20651253)
Ensembl
RGD
PMID:20651253 GO_REF:0000107 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Dr1 down-regulator of transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:2,463,651...2,475,004
Ensembl chr14:2,463,643...2,474,780
Ensembl chr14:2,463,643...2,474,780
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) RGD PMID:19026781 MGI:3820717 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Foxa1 forkhead box A1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4456944|PMID:15748903)
Ensembl
RGD
PMID:15748903 GO_REF:0000107 MGI:4456944 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gatad1 GATA zinc finger domain containing 1 involved_in ISO (PMID:20850016) RGD PMID:20850016 NCBI chr 4:27,647,005...27,658,533
Ensembl chr 4:27,647,335...27,657,167
JBrowse link
G Hcfc1 host cell factor C1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,812,012...156,837,227
Ensembl chr  X:156,812,064...156,837,227
JBrowse link
G Hcfc2 host cell factor C2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:27,107,931...27,136,658
Ensembl chr 7:27,108,116...27,136,652
JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO (PMID:18850004) RGD PMID:18850004 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO MGI:2154359 (MGI:3699537|PMID:11733582)
(MGI:2388420|PMID:12367519)
RGD PMID:11733582 PMID:12367519 MGI:2388420 MGI:3699537 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Ino80c INO80 complex subunit C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,995,005...16,009,639
Ensembl chr18:15,995,000...16,009,710
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:198,287,489...198,298,076
Ensembl chr 1:198,287,490...198,298,076
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:20,183,440...20,365,219
Ensembl chr17:20,184,245...20,364,714
JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:17707232) RGD PMID:17707232 NCBI chr 9:4,440,982...4,492,949 JBrowse link
G Kdm4a lysine demethylase 4A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430
JBrowse link
G Kdm4b lysine demethylase 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:10,656,035...10,734,127
Ensembl chr 9:10,653,216...10,734,073
JBrowse link
G Kdm4c lysine demethylase 4C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Kdm4d lysine demethylase 4D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:12,968,192...12,993,651
Ensembl chr 8:13,511,805...13,513,337
JBrowse link
G Kdm5a lysine demethylase 5A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:152,892,388...152,972,196
Ensembl chr 4:152,892,388...152,972,201
JBrowse link
G Kdm5b lysine demethylase 5B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:51,384,371...51,455,392
Ensembl chr13:51,384,389...51,455,357
JBrowse link
G Kdm5c lysine demethylase 5C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:22,302,664...22,349,298
Ensembl chr  X:22,302,485...22,348,627
JBrowse link
G Kdm5d lysine demethylase 5D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:501,058...589,267
Ensembl chr  Y:505,996...589,267
JBrowse link
G Kdm6a lysine demethylase 6A involved_in ISO (MGI:4866963|PMID:21095589) RGD PMID:21095589 MGI:4866963 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO (MGI:4866963|PMID:21095589) RGD PMID:21095589 MGI:4866963 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
G Klf1 Kruppel like factor 1 acts_upstream_of_or_within ISO (MGI:3056025|PMID:15489291) RGD PMID:15489291 MGI:3056025 NCBI chr19:26,016,289...26,019,557
Ensembl chr19:26,016,382...26,019,553
JBrowse link
G LOC108348070 lysine-specific demethylase 4D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:13,511,349...13,513,661
Ensembl chr 8:12,968,193...12,993,651
Ensembl chr 8:12,968,193...12,993,651
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2158698|MGI:88393 (MGI:3616131|PMID:15044367), (MGI:3616364|PMID:16415155) RGD PMID:15044367 PMID:16415155 MGI:3616131 MGI:3616364 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:23260667) RGD PMID:23260667 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mpnd MPN domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:11,055,370...11,061,611
Ensembl chr 9:11,055,371...11,061,611
JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO
ISS
(PMID:21533051)
GO_REF:0000024
RGD
UniProt
PMID:21533051 GO_REF:0000024 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 involved_in ISO
IBA
(PMID:17707232)
PMID:21873635
RGD PMID:17707232, PMID:21873635 RGD:13792537 NCBI chr 5:113,902,115...113,939,083
Ensembl chr 5:113,906,803...113,939,127
JBrowse link
G Npm1 nucleophosmin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:12714744)
MGI:2182141 (MGI:2662932|PMID:12714744)
PMID:21873635
RGD PMID:12714744, PMID:21873635 MGI:2662932, RGD:13792537 NCBI chr15:52,337,457...52,345,849
Ensembl chr15:52,337,528...52,344,629
JBrowse link
G Npm3 nucleophosmin/nucleoplasmin, 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:265,504,105...265,506,080
Ensembl chr 1:265,504,575...265,506,046
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Nudt5 nudix hydrolase 5 involved_in ISO
ISS
(PMID:27257257)
GO_REF:0000024
RGD
UniProt
PMID:27257257 GO_REF:0000024 NCBI chr17:76,387,027...76,410,309
Ensembl chr17:76,387,031...76,410,294
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5688228|PMID:26134869) RGD PMID:26134869 MGI:5688228 NCBI chr 3:160,410,733...160,447,073
Ensembl chr 3:160,410,757...160,444,940
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:159,260,675...159,293,906
Ensembl chr 5:159,260,675...159,293,673
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO
ISS
(PMID:23260667)
GO_REF:0000024
RGD
UniProt
PMID:23260667 GO_REF:0000024 NCBI chr 1:162,768,156...162,883,356
Ensembl chr 1:162,768,156...162,883,355
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831|MGI:3047633 (MGI:5440096|PMID:23070814) RGD PMID:23070814 MGI:5440096 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14609955) RGD PMID:14609955 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO PR:O09106 (MGI:2683041|PMID:14645126) RGD PMID:14645126 MGI:2683041 NCBI chr 5:167,330,966...167,664,506
Ensembl chr 5:167,331,035...167,664,505
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA
ISO
PMID:21873635
(PMID:23637611)
RGD PMID:23637611, PMID:21873635 RGD:13792537 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Satb1 SATB homeobox 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2386676 (MGI:5295905|PMID:21930775)
RGD PMID:21930775, PMID:21873635 MGI:5295905, RGD:13792537 NCBI chr 9:2,181,135...2,277,949
Ensembl chr 9:2,190,915...2,274,629
JBrowse link
G Satb2 SATB homeobox 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3793380|PMID:18255031)
RGD PMID:18255031, PMID:21873635 MGI:3793380, RGD:13792537 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO MGI:3706668 (MGI:3703453|PMID:17215307) RGD PMID:17215307 MGI:3703453 NCBI chr 5:139,379,256...139,466,805
Ensembl chr 5:139,385,429...139,466,081
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 involved_in ISO (PMID:14609955) RGD PMID:14609955 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 NOT|involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:244,615,811...244,783,736
Ensembl chr 1:244,615,821...244,782,706
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in
acts_upstream_of_or_within
ISO (PMID:10943845), (PMID:11726552), (PMID:22368283)
MGI:3611933 (MGI:3610843|PMID:16287714)
RGD PMID:10943845 PMID:11726552 PMID:16287714 PMID:22368283 MGI:3610843 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in
acts_upstream_of_or_within
ISO (PMID:9836642)
MGI:2151152 (MGI:2149896|PMID:11532953), (MGI:2179578|PMID:11980720)
RGD PMID:9836642 PMID:11532953 PMID:11980720 MGI:2149896 MGI:2179578 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:11726552), (PMID:22368283) RGD PMID:11726552 PMID:22368283 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in ISO (PMID:10078207), (PMID:11018012), (PMID:11726552) RGD PMID:10078207 PMID:11018012 PMID:11726552 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in ISO (PMID:10078207), (PMID:11018012), (PMID:11726552) RGD PMID:10078207 PMID:11018012 PMID:11726552 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:11726552), (PMID:12917342) RGD PMID:11726552 PMID:12917342 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in ISO (PMID:11726552) RGD PMID:11726552 NCBI chr10:94,451,866...94,460,732
Ensembl chr10:94,451,866...94,460,732
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:11726552) RGD PMID:11726552 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in ISO (PMID:11726552) RGD PMID:11726552 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Smyd1 SET and MYND domain containing 1 acts_upstream_of_or_within ISO PR:O09106 (MGI:2178868|PMID:11923873) RGD PMID:11923873 MGI:2178868 NCBI chr 4:99,071,122...99,125,143
Ensembl chr 4:99,074,535...99,125,111
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Suv39h2 suppressor of variegation 3-9 homolog 2 involved_in ISO (PMID:10949293) RGD PMID:10949293 NCBI chr17:78,762,897...78,782,016
Ensembl chr17:78,762,991...78,782,016
JBrowse link
G Tada2a transcriptional adaptor 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:71,393,701...71,441,435
Ensembl chr10:71,393,692...71,441,389
JBrowse link
G Tada2b transcriptional adaptor 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:79,446,057...79,457,341
Ensembl chr14:79,446,057...79,457,333
JBrowse link
G Tnp1 transition protein 1 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:12743712)
GO_REF:0000024
RGD
UniProt
PMID:12743712, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Top1 DNA topoisomerase I involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:22904072)
UniProt
Ensembl
RGD
PMID:22904072, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 3:156,635,688...156,717,686
Ensembl chr 3:156,642,464...156,717,686
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:5295905|PMID:21930775) RGD PMID:21930775 MGI:5295905 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (MGI:85982|PMID:9049305) RGD PMID:9049305 MGI:85982 NCBI chr 3:7,635,630...7,660,153
Ensembl chr 3:7,635,933...7,660,673
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:99,401,775...99,425,739
Ensembl chr 6:99,402,360...99,424,019
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:26816381)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26816381 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:11,429,266...11,446,119
Ensembl chr 7:11,432,049...11,444,786
JBrowse link
chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062859.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:11,859,630...11,860,001 JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO
IEA
(PMID:21102443)
GO_REF:0000107
RGD
Ensembl
PMID:21102443 GO_REF:0000107 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319
JBrowse link
G Eed embryonic ectoderm development involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G H1f0 H1.0 linker histone involved_in ISO UniProtKB:P09429 (PMID:19158276) RGD PMID:19158276 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2ac1 H2A clustered histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,422,454...43,422,846
Ensembl chr17:43,422,454...43,422,846
JBrowse link
G H2ac12 H2A clustered histone 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,527,990...44,528,557
Ensembl chr17:44,528,125...44,528,511
JBrowse link
G H2ac20 H2A clustered histone 20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,360,271...198,360,735
Ensembl chr 2:198,360,301...198,360,678
JBrowse link
G H2ac21 H2A clustered histone 21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,359,754...198,360,146
Ensembl chr 2:198,359,754...198,360,146
JBrowse link
G H2aj H2A.J histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,766,900...170,767,384
Ensembl chr 4:170,766,900...170,767,382
Ensembl chr 4:170,766,900...170,767,382
JBrowse link
G H2ap H2A.P histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:13,989,401...13,989,955
Ensembl chr  X:13,989,401...13,989,955
JBrowse link
G H2ax H2A.X variant histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G H2az1 H2A.Z variant histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,105,224...243,107,333
Ensembl chr 2:243,105,674...243,106,956
JBrowse link
G H2az2 H2A.Z variant histone 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,687,782...86,706,639
Ensembl chr14:86,687,782...86,706,626
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within ISO MGI:2178586 (MGI:3510059|PMID:15448183) RGD PMID:15448183 MGI:3510059 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,520,484...44,521,142
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2af histone cluster 1 H2A family member F involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,627,237...43,627,629
Ensembl chr17:43,627,237...43,627,629
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,632,354...43,632,851
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G Hist1h2ai histone cluster 1, H2ai involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,758,412...44,759,675
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,794,087...44,794,563
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ak histone cluster 1, H2ak involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,840,990...44,841,382
Ensembl chr17:44,840,990...44,841,382
JBrowse link
G Hist1h2an histone cluster 1, H2an involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,779,174...43,779,775
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,381,678...198,382,247
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist2h2aa3 histone cluster 2 H2A family member A3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,388,766...198,389,293
Ensembl chr 2:198,388,809...198,389,201
Ensembl chr 2:198,388,809...198,389,201
JBrowse link
G Hist3h2a histone cluster 3, H2a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,297,603...45,299,155 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO UniProtKB:P07305 (PMID:19158276) RGD PMID:19158276 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Kdm1a lysine demethylase 1A involved_in ISO (MGI:4461095|PMID:20123967) RGD PMID:20123967 MGI:4461095 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Kmt2d lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:4849597 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G LOC100363125 rCG42854-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:13,991,860...13,992,606
Ensembl chr  X:13,992,064...13,992,429
JBrowse link
G LOC100910554 histone H2A type 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,738,552...44,739,195
Ensembl chr17:44,738,643...44,739,035
JBrowse link
G LOC103690190 histone H2A type 1-E involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,747,686...44,748,229
Ensembl chr17:44,747,796...44,748,188
Ensembl chr17:44,747,796...44,748,188
JBrowse link
G LOC680063 similar to histone 2a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC684773 similar to histone 2a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,777,353...43,777,827
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
Ensembl chr17:44,520,537...44,520,929
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137311 (MGI:3530434|PMID:15608638)
Ensembl
RGD
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Pcgf1 polycomb group ring finger 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Pcgf2 polycomb group ring finger 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:72,909,550...72,945,884
Ensembl chr10:72,909,550...72,945,884
JBrowse link
G RGD1562306 similar to H2A histone family, member Z involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:11,859,622...11,860,016 JBrowse link
G RGD1562871 similar to BMI1-like protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:79,546,624...79,547,767
Ensembl chr  X:79,546,624...79,547,767
JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS
(PMID:11315969)
GO_REF:0000024
RGD
UniProt
PMID:11315969 GO_REF:0000024 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
ISO
PMID:21873635
(MGI:4431162|PMID:20080676)
RGD PMID:20080676, PMID:21873635 MGI:4431162, RGD:13792537 NCBI chr 9:16,003,058...16,080,152
Ensembl chr 9:16,003,058...16,080,152
JBrowse link
chromatin silencing at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dot1l DOT1 like histone lysine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,786,105...11,824,742
Ensembl chr 7:11,786,105...11,824,742
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:22,296,128...22,316,894
Ensembl chr 6:22,296,128...22,316,894
JBrowse link
G Dydc1 DPY30 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,648,030...18,667,962
Ensembl chr16:18,648,866...18,667,968
JBrowse link
G Dydc2 DPY30 domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,635,235...18,649,074
Ensembl chr16:18,635,388...18,645,941
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO UniProtKB:P38827 (MGI:892875|PMID:9214638) RGD PMID:9214638 MGI:892875 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO UniProtKB:P38827 (PMID:9214638) RGD PMID:9214638 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (MGI:5584328|PMID:24735877) RGD PMID:24735877 MGI:5584328 NCBI chr 3:37,599,540...37,648,818
Ensembl chr 3:37,599,728...37,647,631
JBrowse link
chromatin-mediated maintenance of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdca4 cell division cycle associated 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,396,133...137,421,283
Ensembl chr 6:137,396,140...137,421,283
JBrowse link
G Chek1 checkpoint kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5294291|PMID:18243098)
UniProt
RGD
PMID:18243098 GO_REF:0000024 MGI:5294291 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
G Elof1 elongation factor 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:23,125,987...23,130,980
Ensembl chr 8:23,125,988...23,130,877
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5688228|PMID:26134869) RGD PMID:26134869 MGI:5688228 NCBI chr 3:160,410,733...160,447,073
Ensembl chr 3:160,410,757...160,444,940
JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:22853951)
Ensembl
RGD
PMID:22853951 GO_REF:0000107 NCBI chr 5:159,428,479...159,471,113
Ensembl chr 5:159,428,515...159,471,144
JBrowse link
G Sertad1 SERTA domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,293,102...84,296,370
Ensembl chr 1:84,293,102...84,296,367
JBrowse link
G Sertad2 SERTA domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:104,786,649...104,890,022
Ensembl chr14:104,821,215...104,886,197
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) RGD PMID:12917342 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:1,749,191...1,954,633
Ensembl chr16:1,749,191...1,954,614
JBrowse link
G Zmiz2 zinc finger, MIZ-type containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,645,875...86,662,419
Ensembl chr14:86,652,365...86,661,441
Ensembl chr14:86,652,365...86,661,441
JBrowse link
covalent chromatin modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd1 chromodomain helicase DNA binding protein 1 involved_in ISO (PMID:28866611) RGD PMID:28866611 NCBI chr 1:57,692,828...57,756,762
Ensembl chr 1:57,692,836...57,755,485
JBrowse link
G Setd5 SET domain containing 5 involved_in ISO (MGI:5812827|PMID:27864380) RGD PMID:27864380 MGI:5812827 NCBI chr 4:145,017,549...145,095,247
Ensembl chr 4:145,017,608...145,095,245
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO MGI:1261819 (MGI:3611125|PMID:16322236), (MGI:3768461|PMID:17938196) RGD PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827 (MGI:3768461|PMID:17938196) RGD PMID:17938196 MGI:3768461 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:Q9UBB5 (PMID:23770133) RGD PMID:23770133 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
ISO
PMID:21873635
(MGI:3573964|PMID:15647320)
RGD PMID:15647320, PMID:21873635 MGI:3573964, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in ISO UniProtKB:Q13547 (PMID:23770133) RGD PMID:23770133 NCBI chr18:65,814,026...65,885,115
Ensembl chr18:65,814,026...65,885,114
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:3611125 NCBI chr 7:12,179,046...12,186,251
Ensembl chr 7:12,179,203...12,186,656
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:3611125 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IBA
ISO
PMID:21873635
(PMID:14718166)
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,144,871...170,145,311
Ensembl chr 4:170,144,951...170,145,262
JBrowse link
G H4f16 H4 histone 16 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,821,122...43,821,587 JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,794,397...43,795,493 JBrowse link
G Nasp nuclear autoantigenic sperm protein acts_upstream_of_or_within
involved_in
ISS
ISO
IBA
GO_REF:0000024
(MGI:3694318|PMID:16728391)
PMID:21873635
(PMID:14718166)
UniProt
RGD
PMID:14718166 PMID:16728391, PMID:21873635 GO_REF:0000024 MGI:3694318, RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22391447)
UniProt
Ensembl
RGD
PMID:22391447 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166, PMID:21873635 GO_REF:0000002 GO_REF:0000107, RGD:13792537 NCBI chr20:13,836,032...13,963,003
Ensembl chr20:13,836,030...13,963,003
JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,144,871...170,145,311
Ensembl chr 4:170,144,951...170,145,262
JBrowse link
G H4f16 H4 histone 16 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,821,122...43,821,587 JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hira histone cell cycle regulator involved_in IBA
ISO
PMID:21873635
(PMID:14718166)
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,690,224...10,725,655
Ensembl chr10:10,690,224...10,725,655
JBrowse link
DNA replication-independent nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,772,096...26,772,732 JBrowse link
G Bahd1 bromo adjacent homology domain containing 1 involved_in ISO (PMID:19666599) RGD PMID:19666599 NCBI chr 3:110,708,790...110,732,038
Ensembl chr 3:110,723,481...110,732,060
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107), (MGI:4462332|PMID:20168299) RGD PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) RGD PMID:19026781 MGI:3820717 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:16901784)
UniProt
RGD
PMID:16901784 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,816,053...118,816,725
Ensembl chr 7:118,816,218...118,816,655
Ensembl chr 5:118,816,218...118,816,655
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:78,380,813...78,384,047
Ensembl chr 5:78,380,816...78,384,047
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:15469825) RGD PMID:15469825 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:163,787,101...163,847,671
Ensembl chr 3:163,787,101...163,847,671
JBrowse link
heterochromatin maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5578697|PMID:24335282) RGD PMID:24335282 MGI:5578697 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (PMID:19372552) RGD PMID:19372552 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:24769206) RGD PMID:24769206 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA
(PMID:15469825)
GO_REF:0000107
RGD
Ensembl
PMID:15469825 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:3720437|PMID:17488778) RGD PMID:17488778 MGI:3720437 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) RGD PMID:21266480 MGI:5317038 NCBI chr15:24,021,674...24,056,073
Ensembl chr15:24,021,674...24,056,073
JBrowse link
heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
(PMID:24830416)
GO_REF:0000002
GO_REF:0000107
UniProt
RGD
InterPro
Ensembl
PMID:24830416, PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 5:156,581,732...156,609,059
Ensembl chr 5:156,581,732...156,609,059
JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24239292)
UniProt
Ensembl
RGD
PMID:24239292 GO_REF:0000024 GO_REF:0000107 NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
JBrowse link
G Mecom MDS1 and EVI1 complex locus involved_in ISO (MGI:6274969|PMID:22939622) RGD PMID:22939622 MGI:6274969 NCBI chr 2:117,396,084...117,993,604
Ensembl chr 2:117,396,007...117,454,769
JBrowse link
G Prdm16 PR/SET domain 16 involved_in ISO (MGI:6274969|PMID:22939622) RGD PMID:22939622 MGI:6274969 NCBI chr 5:171,662,277...171,711,561
Ensembl chr 5:171,662,277...171,710,316
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:23509280)
(MGI:5471848|PMID:23509280)
RGD PMID:23509280 MGI:5471848 NCBI chr 2:140,576,188...140,618,405
Ensembl chr 2:140,576,188...140,618,405
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,699,135...39,745,035
Ensembl chr15:39,712,861...39,742,103
Ensembl chr15:39,712,861...39,742,103
JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO (MGI:5548026|PMID:24239292) RGD PMID:24239292 MGI:5548026 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
heterochromatin organization involved in chromatin silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (MGI:5532809|PMID:23754746), (MGI:5803776|PMID:26391951) RGD PMID:23754746 PMID:26391951 MGI:5532809 MGI:5803776 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
histone acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07066180.1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 9:4,440,982...4,447,715 JBrowse link
G Arrb1 arrestin, beta 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:164,502,099...164,573,947
Ensembl chr 1:164,502,389...164,593,139
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO MGI:99161 (MGI:3629244|PMID:16687444) RGD PMID:16687444 MGI:3629244 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Brd8 bromodomain containing 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:27,375,645...27,423,989
Ensembl chr18:27,398,688...27,424,090
JBrowse link
G Brd8dc BRD8 domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:27,375,919...27,395,603 JBrowse link
G Clock clock circadian regulator involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Crebbp CREB binding protein involved_in IDA
IBA
ISO
ISS
IEA
PMID:21873635
(PMID:11742995)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11742995, PMID:15632413, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:1643534, RGD:13792537 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Ep300 E1A binding protein p300 involved_in IMP
ISO
(MGI:5908770|PMID:27105113)
(PMID:25818647), (PMID:27256286)
RGD PMID:25818647 PMID:27105113 PMID:27256286, PMID:18292803 MGI:5908770, RGD:2312266 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Epc2 enhancer of polycomb homolog 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:33,641,616...33,741,219
Ensembl chr 3:33,641,616...33,740,461
JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Gtf3c4 general transcription factor IIIC subunit 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:7,404,857...7,422,779
Ensembl chr 3:7,404,841...7,422,738
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:2384429 (MGI:3758555|PMID:11287626) RGD PMID:11287626 MGI:3758555 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Kat14 lysine acetyltransferase 14 acts_upstream_of_or_within ISO MGI:3836392 (MGI:3835889|PMID:19103755) RGD PMID:19103755 MGI:3835889 NCBI chr 3:138,508,899...138,549,437
Ensembl chr 3:138,504,214...138,549,437
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:29973595), (PMID:31527837) RGD PMID:29973595 PMID:31527837 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Kat2b lysine acetyltransferase 2B acts_upstream_of_or_within ISO (MGI:3582105|PMID:15992539) RGD PMID:15992539 MGI:3582105 NCBI chr 9:4,440,982...4,492,949 JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IMP
ISO
IEA
(PMID:10966108)
GO_REF:0000107
RGD
Ensembl
PMID:10966108, PMID:12776177 GO_REF:0000107, RGD:1302285 NCBI chr 1:220,967,795...220,974,596
Ensembl chr 1:220,967,796...220,974,597
JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in ISS
ISO
GO_REF:0000024
(PMID:11742995), (PMID:17925393)
UniProt
RGD
PMID:11742995 PMID:17925393 GO_REF:0000024 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in
acts_upstream_of_or_within
ISO (PMID:11965546)
(MGI:1858526|PMID:10821753)
RGD PMID:10821753 PMID:11965546 MGI:1858526 NCBI chr15:2,811,933...2,966,833
Ensembl chr15:2,813,537...2,966,576
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:83,095,067...83,128,342
Ensembl chr10:83,095,068...83,128,297
JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO (PMID:11742995) RGD PMID:11742995 NCBI chr 1:199,360,645...199,372,925
Ensembl chr 1:199,360,645...199,372,923
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within ISO MGI:2388006 (MGI:3619832|PMID:16462733) RGD PMID:16462733 MGI:3619832 NCBI chr 7:12,179,046...12,186,251
Ensembl chr 7:12,179,203...12,186,656
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137311 (MGI:3576944|PMID:15757975)
Ensembl
RGD
PMID:15757975 GO_REF:0000107 MGI:3576944 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Med24 mediator complex subunit 24 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:86,620,166...86,658,014
Ensembl chr10:86,620,160...86,645,529
JBrowse link
G Mettl8 methyltransferase like 8 acts_upstream_of_or_within ISO (MGI:3582105|PMID:15992539) RGD PMID:15992539 MGI:3582105 NCBI chr 3:57,257,394...57,642,096 JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Mrgbp MRG domain binding protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:175,924,456...175,927,925
Ensembl chr 3:176,087,700...176,090,268
Ensembl chr 3:176,087,700...176,090,268
JBrowse link
G Msl3 MSL complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Naa50 N(alpha)-acetyltransferase 50, NatE catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:61,508,162...61,530,830
Ensembl chr11:61,462,994...61,530,837
Ensembl chr11:61,462,994...61,530,837
JBrowse link
G Nat8f3 N-acetyltransferase 8 (GCN5-related) family member 3 acts_upstream_of_or_within ISO (MGI:5701671|PMID:25123547) RGD PMID:25123547 MGI:5701671 NCBI chr 4:117,488,089...117,492,315
Ensembl chr 4:117,490,035...117,490,721
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:162,692,176...162,788,582
Ensembl chr 3:162,692,185...162,787,548
JBrowse link
G Oga O-GlcNAcase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:265,506,752...265,542,452
Ensembl chr 1:265,507,451...265,542,276
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:88174 (MGI:3629244|PMID:16687444) RGD PMID:16687444 MGI:3629244 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Phf20 PHD finger protein 20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:152,273,269...152,379,742
Ensembl chr 3:152,294,656...152,377,170
JBrowse link
G Phf20l1 PHD finger protein 20-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,406,948...107,445,219
NCBI chr 7:108,613,731...108,759,741
Ensembl chr 7:108,613,739...108,756,747
Ensembl chr 7:108,613,739...108,756,747
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO
ISS
(PMID:23894581)
GO_REF:0000024
RGD
UniProt
PMID:23894581 GO_REF:0000024 NCBI chr 1:198,066,974...198,100,494
Ensembl chr 1:198,067,066...198,100,493
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (MGI:3847877|PMID:11592977) RGD PMID:11592977 MGI:3847877 NCBI chr  X:71,412,291...71,486,456
Ensembl chr  X:71,412,289...71,485,085
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,320,269...19,328,706
Ensembl chr12:19,320,271...19,328,637
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:224,974,238...224,986,819
Ensembl chr 1:224,974,208...224,986,291
JBrowse link
histone arginine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4887326|PMID:17882261)
UniProt
RGD
PMID:17882261 GO_REF:0000024 MGI:4887326 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560
JBrowse link
G Prmt2 protein arginine methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:13,154,513...13,212,613
Ensembl chr20:13,156,241...13,212,606
JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,156,508...33,165,893
Ensembl chr15:33,156,492...33,165,895
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3692841|PMID:17048991)
UniProt
RGD
PMID:17048991 GO_REF:0000024 MGI:3692841 NCBI chr19:38,189,605...38,237,155
Ensembl chr19:38,189,605...38,237,308
JBrowse link
G Prmt8 protein arginine methyltransferase 8 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:160,253,409...160,334,647
Ensembl chr 4:160,253,073...160,334,910
JBrowse link
histone biotinylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hlcs holocarboxylase synthetase involved_in ISO
IBA
(PMID:14613969)
PMID:21873635
RGD PMID:14613969, PMID:21873635 RGD:13792537 NCBI chr11:34,357,372...34,537,798
Ensembl chr11:34,352,287...34,526,931
JBrowse link
histone citrullination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Padi1 peptidyl arginine deiminase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,338,850...159,371,313
Ensembl chr 5:159,338,850...159,371,313
JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,428,479...159,471,113
Ensembl chr 5:159,428,515...159,471,144
JBrowse link
G Padi3 peptidyl arginine deiminase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,309,000...159,336,429
Ensembl chr 5:159,309,000...159,336,429
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5545819|PMID:24463520)
PMID:21873635
(PMID:15339660), (PMID:16567635)
UniProt
RGD
PMID:15339660 PMID:16567635 PMID:24463520, PMID:21873635 GO_REF:0000024 MGI:5545819, RGD:13792537 NCBI chr 5:159,260,675...159,293,906
Ensembl chr 5:159,260,675...159,293,673
JBrowse link
G Padi6 peptidyl arginine deiminase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,241,276...159,256,749
Ensembl chr 5:159,241,413...159,256,699
JBrowse link
histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:3852313|PMID:12198165) RGD PMID:12198165 MGI:3852313 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Brms1 BRMS1, transcriptional repressor and anoikis regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,325,352...220,334,616
Ensembl chr 1:220,325,352...220,334,615
Ensembl chr 1:220,325,352...220,334,615
JBrowse link
G Brms1l BRMS1 like transcriptional repressor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:76,675,399...76,708,261
NCBI chr 6:76,743,243...76,753,950
Ensembl chr 6:76,675,418...76,708,261
Ensembl chr 6:76,675,418...76,708,261
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:19182791) RGD PMID:19182791 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISO
IEA
(PMID:11739383)
GO_REF:0000108
(PMID:11861901)
RGD
GOC
PMID:11739383 PMID:11861901 GO_REF:0000108 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437
JBrowse link
G Hdac11 histone deacetylase 11 involved_in ISO (PMID:11948178) RGD PMID:11948178 NCBI chr 4:122,781,095...122,798,355
Ensembl chr 4:122,781,095...122,798,353
JBrowse link
G Hdac2 histone deacetylase 2 involved_in
acts_upstream_of_or_within
ISO (PMID:19372552)
MGI:1916782 (MGI:3712793|PMID:12975471)
RGD PMID:12975471 PMID:19372552 MGI:3712793 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac3 histone deacetylase 3 acts_upstream_of_or_within ISO MGI:1932093 (MGI:3580040|PMID:15832170), (MGI:3807603|PMID:17464331) RGD PMID:15832170 PMID:17464331 MGI:3580040 MGI:3807603 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO (PMID:10869435), (PMID:18850004) RGD PMID:10869435 PMID:18850004 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 involved_in NAS
ISO
(PMID:10869435) RGD PMID:10869435, PMID:12896970 RGD:1304416 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:10220385)
(MGI:5605128|PMID:24882211)
RGD PMID:10220385 PMID:24882211 MGI:5605128 NCBI chr  X:15,396,185...15,417,486
Ensembl chr  X:15,295,473...15,316,671
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
G Hdac9 histone deacetylase 9 involved_in ISO (PMID:11535832) RGD PMID:11535832 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Hopx HOP homeobox acts_upstream_of_or_within ISO MGI:1097691 (MGI:3712793|PMID:12975471) RGD PMID:12975471 MGI:3712793 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G LOC102552640 REST corepressor 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:19,603,294...19,609,393
Ensembl chr15:19,603,288...19,609,382
JBrowse link
G Mideas mitotic deacetylase associated SANT domain protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,633,762...107,703,462
Ensembl chr 6:107,633,716...107,678,156
JBrowse link
G Mier1 MIER1 transcriptional regulator involved_in IBA
ISO
PMID:21873635
(PMID:28046085)
RGD PMID:28046085, PMID:21873635 RGD:13792537 NCBI chr 5:122,642,065...122,693,642
Ensembl chr 5:122,641,885...122,693,635
JBrowse link
G Mier2 MIER family member 2 involved_in IBA
ISO
PMID:21873635
(PMID:28046085)
RGD PMID:28046085, PMID:21873635 RGD:13792537 NCBI chr 7:13,039,759...13,055,632
Ensembl chr 7:13,039,781...13,055,632
JBrowse link
G Mier3 MIER family member 3 NOT|involved_in ISO (PMID:28046085) RGD PMID:28046085 NCBI chr 2:43,266,301...43,295,175
Ensembl chr 2:43,266,739...43,294,889
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:14966270)
UniProt
RGD
PMID:14966270, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Mta1 metastasis associated 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Mta2 metastasis associated 1 family, member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:225,140,863...225,149,584
Ensembl chr 1:225,140,863...225,149,583
JBrowse link
G Mta3 metastasis associated 1 family, member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:6,904,449...7,036,929
Ensembl chr 6:6,908,684...7,031,828
JBrowse link
G Phb prohibitin involved_in ISO (PMID:12466959) RGD PMID:12466959 NCBI chr10:83,476,107...83,488,878
Ensembl chr10:83,476,107...83,488,878
JBrowse link
G Prdm5 PR/SET domain 5 involved_in ISO (PMID:17636019) RGD PMID:17636019 NCBI chr 4:96,659,062...96,810,816
Ensembl chr 4:96,659,084...96,812,263
JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in ISO UniProtKB:Q92793 (PMID:11443112) RGD PMID:11443112 NCBI chr 1:220,048,740...220,067,124
Ensembl chr 1:220,048,873...220,067,124
JBrowse link
G Rcor1 REST corepressor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:135,475,470...135,552,155
Ensembl chr 6:135,513,650...135,548,201
Ensembl chr 6:135,513,650...135,548,201
JBrowse link
G Rcor2 REST corepressor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,513,970...222,525,356
Ensembl chr 1:222,519,615...222,524,779
JBrowse link
G Rcor2l1 REST corepressor 2-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:222,519,615...222,524,779
Ensembl chr15:222,519,615...222,524,779
JBrowse link
G Rcor3 REST corepressor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:110,822,149...110,864,469
Ensembl chr13:110,822,150...110,864,469
JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
G Sin3b SIN3 transcription regulator family member B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,842,456...18,860,086
Ensembl chr16:18,842,456...18,860,086
JBrowse link
G Sirt1 sirtuin 1 involved_in
acts_upstream_of_or_within
ISO (PMID:12006491), (PMID:15469825), (PMID:16079181), (PMID:17172643)
MGI:107187 (MGI:1891853|PMID:10693811), (MGI:5493185|PMID:23160044)
(MGI:4887284|PMID:20972425)
RGD PMID:10693811 PMID:12006491 PMID:15469825 PMID:16079181 PMID:17172643 PMID:20972425 PMID:23160044 MGI:1891853 MGI:4887284 MGI:5493185 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt2 sirtuin 2 involved_in
acts_upstream_of_or_within
NOT|involved_in
ISO (PMID:24177535)
MGI:1915724|MGI:2144471 (MGI:4462728|PMID:20562830)
RGD PMID:20562830 PMID:24177535 MGI:4462728 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component involved_in ISO
IBA
(PMID:21239494)
PMID:21873635
RGD PMID:21239494, PMID:21873635 RGD:13792537 NCBI chr12:45,199,012...45,221,507
Ensembl chr12:45,199,577...45,221,512
JBrowse link
G Tbl1x transducin (beta)-like 1 X-linked involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:44,959,883...44,988,551
Ensembl chr  X:44,830,849...44,988,551
JBrowse link
G Tbl1xr1 TBL1X receptor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Trerf1 transcriptional regulating factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:15,653,230...15,881,695
Ensembl chr 9:15,655,735...15,700,312
JBrowse link
G Zfp541 zinc finger protein 541 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:77,957,188...77,993,816
Ensembl chr 1:77,967,755...77,992,027
JBrowse link
histone demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl19 F-box and leucine-rich repeat protein 19 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:199,196,126...199,217,147
Ensembl chr 1:199,196,059...199,216,391
JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:16024779) RGD PMID:16024779 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430
JBrowse link
G Kdm6b lysine demethylase 6B acts_upstream_of_or_within ISO (MGI:3764743|PMID:17928865) RGD PMID:17928865 MGI:3764743 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
G RGD1310212 similar to KIAA1111-like protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:15,360,000...15,366,120
Ensembl chr 7:15,360,700...15,364,203
JBrowse link
histone dephosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IBA
ISO
PMID:21873635
(PMID:19234442)
RGD PMID:19234442, PMID:21873635 RGD:13792537 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 involved_in IBA
ISO
PMID:21873635
(PMID:19351884)
RGD PMID:19351884, PMID:21873635 RGD:13792537 NCBI chr 3:162,285,275...162,470,642
Ensembl chr 3:162,346,490...162,470,065
JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 involved_in IBA
ISO
PMID:21873635
(PMID:19234442), (PMID:19351884)
RGD PMID:19234442 PMID:19351884, PMID:21873635 RGD:13792537 NCBI chr 5:150,833,754...150,915,390
Ensembl chr 5:150,787,043...150,913,757
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:23,237,617...23,611,580
Ensembl chr 1:23,409,408...23,610,164
JBrowse link
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent, 1F IDA RGD PMID:16844074 RGD:7241141 NCBI chr11:88,313,709...88,343,726
Ensembl chr11:88,313,709...88,343,627
JBrowse link
G Ppp5c protein phosphatase 5, catalytic subunit IDA RGD PMID:8602837 RGD:8693754 NCBI chr 1:78,944,054...78,968,361
Ensembl chr 1:78,944,040...78,968,329
JBrowse link
histone deubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn7 ataxin 7 involved_in ISO (PMID:18206972) RGD PMID:18206972 NCBI chr15:12,421,432...12,569,649
Ensembl chr15:12,425,175...12,513,931
JBrowse link
G Atxn7l3 ataxin 7-like 3 involved_in IBA
ISO
PMID:21873635
(PMID:18206972)
RGD PMID:18206972, PMID:21873635 RGD:13792537 NCBI chr10:90,234,749...90,241,757
Ensembl chr10:90,236,928...90,240,509
JBrowse link
G Eny2 ENY2, transcription and export complex 2 subunit involved_in IBA
ISO
PMID:21873635
(PMID:18206972)
RGD PMID:18206972, PMID:21873635 RGD:13792537 NCBI chr 7:83,348,656...83,358,430
Ensembl chr 7:83,348,694...83,357,492
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:18206972) RGD PMID:18206972 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component involved_in ISO (PMID:18206972) RGD PMID:18206972 NCBI chr 9:18,249,565...18,604,814
Ensembl chr 9:18,319,246...18,371,856
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:18206972) RGD PMID:18206972 NCBI chr 1:170,585,160...170,586,428
Ensembl chr 1:170,585,167...170,586,603
JBrowse link
G Trrap transformation/transcription domain-associated protein involved_in ISO (PMID:18206972) RGD PMID:18206972 NCBI chr12:11,537,950...11,627,563
Ensembl chr12:11,537,950...11,627,563
JBrowse link
G Usp16 ubiquitin specific peptidase 16 involved_in ISS
ISO
GO_REF:0000024
(PMID:17914355)
UniProt
RGD
PMID:17914355 GO_REF:0000024 NCBI chr11:27,101,213...27,130,345
Ensembl chr11:27,101,227...27,130,341
JBrowse link
G Usp21 ubiquitin specific peptidase 21 involved_in ISS
ISO
GO_REF:0000024
(MGI:3846030|PMID:18172164)
UniProt
RGD
PMID:18172164 GO_REF:0000024 MGI:3846030 NCBI chr13:89,655,016...89,661,150
Ensembl chr13:89,655,064...89,661,150
JBrowse link
G Usp22 ubiquitin specific peptidase 22 involved_in ISO (PMID:18206972), (PMID:18206973) RGD PMID:18206972 PMID:18206973 NCBI chr10:47,429,201...47,453,298
Ensembl chr10:47,429,002...47,453,442
JBrowse link
G Usp3 ubiquitin specific peptidase 3 involved_in IBA
ISO
PMID:21873635
(PMID:17980597)
RGD PMID:17980597, PMID:21873635 RGD:13792537 NCBI chr 8:72,207,970...72,284,871
Ensembl chr 8:72,207,972...72,284,873
JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:29274341) RGD PMID:29274341 NCBI chr10:107,292,828...107,324,355
Ensembl chr10:107,292,828...107,324,355
JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) RGD PMID:27083998 NCBI chr  X:19,268,352...19,273,753
Ensembl chr  X:19,270,181...19,273,139
JBrowse link
histone displacement term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brdt bromodomain testis associated involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5447877|PMID:22922464)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22922464 GO_REF:0000024 GO_REF:0000107 MGI:5447877 NCBI chr14:3,437,876...3,462,613
Ensembl chr14:3,405,995...3,462,629
JBrowse link
histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:30,377,369...30,397,922
Ensembl chr 7:30,377,360...30,397,930
JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E involved_in ISO
ISS
IBA
(PMID:24463511)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:24463511, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:198,040,573...198,057,005
Ensembl chr 2:198,040,536...198,057,003
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,533,791...136,541,795
Ensembl chr 5:136,533,792...136,541,795
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISS
ISO
GO_REF:0000024
(MGI:3693383|PMID:12509435)
UniProt
RGD
PMID:12509435 GO_REF:0000024 MGI:3693383 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Ptma prothymosin alpha acts_upstream_of_or_within ISO (MGI:4457993|PMID:20434447) RGD PMID:20434447 MGI:4457993 NCBI chr 9:93,545,396...93,549,436
Ensembl chr 9:93,545,396...93,549,436
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:4441228|PMID:20153262)
UniProt
RGD
PMID:20153262 GO_REF:0000024 MGI:4441228 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(PMID:26109053)
PMID:21873635
RGD PMID:26109053, PMID:21873635 RGD:13792537 NCBI chr 1:103,115,280...103,129,438
Ensembl chr 1:103,115,216...103,128,743
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,957,764...199,007,576
Ensembl chr 1:198,960,542...199,007,347
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO
IBA
UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126)
PMID:21873635
RGD PMID:26974126, PMID:21873635 RGD:13792537 NCBI chr 2:196,277,961...196,289,549
Ensembl chr 2:196,277,978...196,289,561
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,726,643...22,732,917
Ensembl chr12:22,726,643...22,732,943
JBrowse link
histone glutamine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crebbp CREB binding protein involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:30540930)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30540930 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Fbl fibrillarin involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:24352239), (PMID:30540930)
PMID:21873635
UniProt
RGD
PMID:24352239 PMID:30540930, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:85,103,519...85,112,619
Ensembl chr 1:85,103,519...85,112,619
JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,620,957...20,622,600
Ensembl chr10:20,620,957...20,622,600
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:30540930)
UniProt
RGD
PMID:30540930 GO_REF:0000024 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
histone H2A acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Brd8 bromodomain containing 8 involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr18:27,375,645...27,423,989
Ensembl chr18:27,398,688...27,424,090
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in ISO
IBA
(PMID:14966270)
PMID:21873635
RGD PMID:14966270, PMID:21873635 RGD:13792537 NCBI chr 5:136,533,791...136,541,795
Ensembl chr 5:136,533,792...136,541,795
JBrowse link
G Ep400 E1A binding protein p400 involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr12:51,948,650...52,055,274
Ensembl chr12:51,948,650...52,055,271
JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr17:57,303,968...57,394,975
Ensembl chr17:57,304,933...57,394,985
JBrowse link
G Ing3 inhibitor of growth family, member 3 involved_in ISO
ISS
(PMID:14966270), (PMID:16387653)
GO_REF:0000024
RGD
UniProt
PMID:14966270 PMID:16387653 GO_REF:0000024 NCBI chr 4:49,017,235...49,044,450
Ensembl chr 4:49,017,311...49,042,990
JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 involved_in ISO
IBA
(PMID:14966270)
PMID:21873635
RGD PMID:14966270, PMID:21873635 RGD:13792537 NCBI chr 5:143,081,298...143,103,225
Ensembl chr 5:143,081,326...143,103,222
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO
IBA
ISS
(PMID:14966270)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:14966270, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Naa40 N(alpha)-acetyltransferase 40, NatD catalytic subunit involved_in ISO (PMID:25619998) RGD PMID:25619998 NCBI chr 1:222,478,021...222,495,382
Ensembl chr 1:222,478,021...222,495,382
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO
ISS
(PMID:14966270)
GO_REF:0000024
RGD
UniProt
PMID:14966270 GO_REF:0000024 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Trrap transformation/transcription domain-associated protein involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr12:11,537,950...11,627,563
Ensembl chr12:11,537,950...11,627,563
JBrowse link
G Yeats4 YEATS domain containing 4 involved_in ISO (PMID:14966270) RGD PMID:14966270 NCBI chr 7:60,287,477...60,294,618
Ensembl chr 7:60,287,531...60,294,796
JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:19202061), (PMID:19261746)
UniProt
RGD
PMID:19202061 PMID:19261746, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:9,863,380...9,865,920
Ensembl chr 9:9,863,404...9,865,920
JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in IBA
ISS
IEA
ISO
PMID:21873635
GO_REF:0000024
GO_REF:0000107
(PMID:19202061)
UniProt
Ensembl
RGD
PMID:19202061, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr17:10,061,915...10,130,921
Ensembl chr17:10,065,947...10,130,907
JBrowse link
G Usp16 ubiquitin specific peptidase 16 involved_in ISO
ISS
(PMID:20550933)
GO_REF:0000024
RGD
UniProt
PMID:20550933 GO_REF:0000024 NCBI chr11:27,101,213...27,130,345
Ensembl chr11:27,101,227...27,130,341
JBrowse link
histone H2A K63-linked ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 involved_in ISO
IEA
ISS
(PMID:19203578), (PMID:19203579), (PMID:19500350), (PMID:20550933)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19203578 PMID:19203579 PMID:19500350 PMID:20550933 GO_REF:0000024 GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
G Rnf8 ring finger protein 8 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:20550933), (PMID:22980979)
GO_REF:0000024
RGD
UniProt
PMID:20550933 PMID:22980979, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
histone H2A monoubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 co-repressor involved_in ISO (PMID:16943429) RGD PMID:16943429 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:124,831,391...124,870,329
Ensembl chr  X:124,832,628...124,870,329
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr 3:80,030,437...80,052,984
Ensembl chr 3:80,030,437...80,052,953
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:16943429) RGD PMID:16943429 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Pcgf1 polycomb group ring finger 1 involved_in ISO (PMID:16943429) RGD PMID:16943429 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Ring1 ring finger protein 1 involved_in IEA
ISO
IBA
GO_REF:0000002
(PMID:16943429)
PMID:21873635
InterPro
RGD
PMID:16943429, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO
IEA
ISS
(PMID:22980979), (PMID:23760478)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22980979 PMID:23760478 GO_REF:0000024 GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
G Rnf2 ring finger protein 2 involved_in ISO
IBA
(PMID:16943429)
PMID:21873635
RGD PMID:16943429, PMID:21873635 RGD:13792537 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Rybp RING1 and YY1 binding protein involved_in ISO (PMID:16943429) RGD PMID:16943429 NCBI chr 4:132,689,623...132,740,823
Ensembl chr 4:132,689,531...132,740,938
JBrowse link
G Skp1 S-phase kinase-associated protein 1 involved_in ISO
IEA
(PMID:16943429)
GO_REF:0000107
RGD
Ensembl
PMID:16943429 GO_REF:0000107 NCBI chr10:37,594,578...37,609,498
Ensembl chr10:37,594,578...37,609,498
JBrowse link
G Trim37 tripartite motif-containing 37 involved_in ISO (PMID:25470042)
(MGI:5613824|PMID:25470042)
RGD PMID:25470042 MGI:5613824 NCBI chr10:74,436,165...74,568,636
Ensembl chr10:74,436,208...74,568,493
JBrowse link
histone H2A phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:3789238|PMID:16079796) RGD PMID:16079796 MGI:3789238 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
histone H2A ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:26479788) RGD PMID:26479788 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3835231|PMID:19015238), (MGI:4441228|PMID:20153262)
GO_REF:0000104
(PMID:18001824), (PMID:18001825)
UniProt
RGD
PMID:18001824 PMID:18001825 PMID:19015238 PMID:20153262 GO_REF:0000024 GO_REF:0000104 MGI:3835231 MGI:4441228 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO (PMID:11953320) RGD PMID:11953320 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B involved_in ISO (PMID:18339854) RGD PMID:18339854 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
ISO
PMID:21873635
(MGI:4431162|PMID:20080676)
RGD PMID:20080676, PMID:21873635 MGI:4431162, RGD:13792537 NCBI chr 9:16,003,058...16,080,152
Ensembl chr 9:16,003,058...16,080,152
JBrowse link
histone H2A-K119 monoubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA
ISO
PMID:21873635
(PMID:26151332)
RGD PMID:26151332, PMID:21873635 RGD:13792537 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Pcgf1 polycomb group ring finger 1 involved_in ISO
ISS
IBA
(PMID:26151332)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:26151332, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Pcgf2 polycomb group ring finger 2 involved_in ISO
IBA
(PMID:26151332)
PMID:21873635
RGD PMID:26151332, PMID:21873635 RGD:13792537 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Pcgf3 polycomb group ring finger 3 involved_in IBA
ISO
PMID:21873635
(MGI:5908473|PMID:28596365)
RGD PMID:28596365, PMID:21873635 MGI:5908473, RGD:13792537 NCBI chr14:2,247,805...2,297,155
Ensembl chr14:2,247,808...2,297,155
JBrowse link
G Pcgf5 polycomb group ring finger 5 involved_in IBA
ISO
PMID:21873635
(MGI:5908473|PMID:28596365)
RGD PMID:28596365, PMID:21873635 MGI:5908473, RGD:13792537 NCBI chr 1:254,974,688...255,090,925
Ensembl chr 1:254,974,789...255,086,207
JBrowse link
G Pcgf6 polycomb group ring finger 6 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26151332)
UniProt
RGD
PMID:26151332, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:266,811,418...266,831,022
Ensembl chr 1:266,811,420...266,830,976
JBrowse link
G RGD1562871 similar to BMI1-like protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:79,546,624...79,547,767
Ensembl chr  X:79,546,624...79,547,767
JBrowse link
G Rnf2 ring finger protein 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5527017|PMID:24034696)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24034696 GO_REF:0000024 GO_REF:0000107 MGI:5527017 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Scml2 Scm polycomb group protein like 2 acts_upstream_of_or_within ISO (MGI:5645866|PMID:25634095) RGD PMID:25634095 MGI:5645866 NCBI chr  X:35,305,235...35,431,271
Ensembl chr  X:35,305,236...35,431,164
JBrowse link
G Trim37 tripartite motif-containing 37 involved_in IBA
ISO
PMID:21873635
(MGI:5613824|PMID:25470042)
(PMID:25470042)
RGD PMID:25470042, PMID:21873635 MGI:5613824, RGD:13792537 NCBI chr10:74,436,165...74,568,636
Ensembl chr10:74,436,208...74,568,493
JBrowse link
histone H2A-K13 ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22980979)
Ensembl
UniProt
RGD
PMID:22980979 GO_REF:0000024 GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
histone H2A-K15 ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:22980979), (PMID:23760478)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22980979 PMID:23760478 GO_REF:0000024 GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
histone H2A-K5 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
histone H2A-S1 phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps6ka5 ribosomal protein S6 kinase A5 involved_in ISO (PMID:15010469) RGD PMID:15010469 NCBI chr 6:124,557,892...124,735,787
Ensembl chr 6:124,557,913...124,735,778
JBrowse link
histone H2A-S139 phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:16061642)
UniProt
RGD
PMID:16061642 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Mst1 macrophage stimulating 1 involved_in ISO (PMID:20921231) RGD PMID:20921231 NCBI chr 8:116,857,716...116,862,286
Ensembl chr 8:116,857,684...116,862,423
JBrowse link
histone H2A-T120 phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in IBA
ISO
PMID:21873635
(PMID:24140421)
RGD PMID:24140421, PMID:21873635 RGD:13792537 NCBI chr 8:115,538,365...115,615,282
Ensembl chr 8:115,546,712...115,615,282
JBrowse link
histone H2B acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO (PMID:10821277) RGD PMID:10821277 NCBI chr 3:60,721,137...60,795,951
Ensembl chr 3:60,721,135...60,795,951
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:23415232) RGD PMID:23415232 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epop elongin BC and polycomb repressive complex 2 associated protein involved_in ISO (MGI:5822935|PMID:27863226) RGD PMID:27863226 MGI:5822935 NCBI chr10:85,573,369...85,574,889
Ensembl chr10:85,573,369...85,574,889
JBrowse link
G Usp15 ubiquitin specific peptidase 15 involved_in ISO
IEA
ISS
(PMID:24526689)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24526689 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,595,707...66,687,707
Ensembl chr 7:66,595,742...66,687,278
JBrowse link
G Usp49 ubiquitin specific peptidase 49 involved_in ISO (PMID:23824326) RGD PMID:23824326 NCBI chr 9:15,314,875...15,375,365
Ensembl chr 9:15,317,413...15,375,365
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5822935|PMID:27863226)
UniProt
RGD
PMID:27863226 GO_REF:0000024 MGI:5822935 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930
JBrowse link
histone H2B conserved C-terminal lysine ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:21329877) RGD PMID:21329877 NCBI chr17:60,887,606...60,946,630
Ensembl chr17:60,888,017...60,946,426
JBrowse link
histone H2B ubiquitination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA
ISO
GO_REF:0000107
(PMID:16307923)
Ensembl
RGD
PMID:16307923 GO_REF:0000107 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:26479788) RGD PMID:26479788 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Rnf20 ring finger protein 20 involved_in ISO (PMID:16307923), (PMID:16337599) RGD PMID:16307923 PMID:16337599 NCBI chr 5:64,892,996...64,920,397
Ensembl chr 5:64,892,802...64,920,390
JBrowse link
G Rnf40 ring finger protein 40 involved_in ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:199,037,472...199,052,823
Ensembl chr 1:199,037,544...199,052,172
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3835231|PMID:19015238), (MGI:4441228|PMID:20153262)
GO_REF:0000104
UniProt
RGD
PMID:19015238 PMID:20153262 GO_REF:0000024 GO_REF:0000104 MGI:3835231 MGI:4441228 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Ube2e1 ubiquitin-conjugating enzyme E2E 1 involved_in ISO
IBA
(PMID:16307923)
PMID:21873635
RGD PMID:16307923, PMID:21873635 RGD:13792537 NCBI chr15:8,124,869...8,178,252
Ensembl chr15:8,125,526...8,177,781
JBrowse link
histone H2B-K12 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
histone H2B-K5 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
histone H3 acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in ISO
IEA
(PMID:9619837)
GO_REF:0000107
RGD
Ensembl
PMID:9619837 GO_REF:0000107 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Brd1 bromodomain containing 1 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 7:129,676,119...129,724,303
Ensembl chr 7:129,676,120...129,724,303
JBrowse link
G Brpf1 bromodomain and PHD finger containing, 1 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 4:145,264,445...145,280,943
Ensembl chr 4:145,264,462...145,280,857
JBrowse link
G Brpf3 bromodomain and PHD finger containing, 3 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr20:6,047,800...6,086,099
Ensembl chr20:6,049,286...6,086,099
JBrowse link
G Dr1 down-regulator of transcription 1 involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr14:2,463,651...2,475,004
Ensembl chr14:2,463,643...2,474,780
Ensembl chr14:2,463,643...2,474,780
JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:22648458 RGD:7327209 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Ing4 inhibitor of growth family, member 4 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 4:157,554,729...157,563,353
Ensembl chr 4:157,554,794...157,563,352
JBrowse link
G Ing5 inhibitor of growth family, member 5 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 9:100,932,932...100,950,233
Ensembl chr 9:100,932,545...100,952,416
JBrowse link
G Irf4 interferon regulatory factor 4 acts_upstream_of_or_within ISO (MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:3615721 NCBI chr17:34,886,746...34,905,191
Ensembl chr17:34,886,739...34,905,117
JBrowse link
G Jade1 jade family PHD finger 1 involved_in ISO
IBA
(PMID:16387653)
PMID:21873635
RGD PMID:16387653, PMID:21873635 RGD:13792537 NCBI chr 2:128,461,147...128,514,298
Ensembl chr 2:128,461,224...128,514,291
JBrowse link
G Jade2 jade family PHD finger 2 involved_in IBA
ISO
PMID:21873635
(PMID:16387653)
RGD PMID:16387653, PMID:21873635 RGD:13792537 NCBI chr10:37,269,132...37,315,638
Ensembl chr10:37,270,183...37,311,625
JBrowse link
G Jade3 jade family PHD finger 3 involved_in ISO
IBA
(PMID:16387653)
PMID:21873635
RGD PMID:16387653, PMID:21873635 RGD:13792537 NCBI chr  X:1,885,927...2,038,639
Ensembl chr  X:1,885,927...1,952,111
JBrowse link
G Kat14 lysine acetyltransferase 14 involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr 3:138,508,899...138,549,437
Ensembl chr 3:138,504,214...138,549,437
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:10373431), (PMID:11564863), (PMID:18838386), (PMID:29211711)
(MGI:5926326|PMID:28424240)
RGD PMID:10373431 PMID:11564863 PMID:18838386 PMID:28424240 PMID:29211711 MGI:5926326 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr 9:4,440,982...4,492,949 JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IBA
GO_REF:0000002
MGI:4418468 (MGI:5442217|PMID:22921202)
(PMID:16387653)
GO_REF:0000024
PMID:21873635
InterPro
RGD
UniProt
PMID:16387653 PMID:22921202, PMID:21873635 GO_REF:0000002 GO_REF:0000024 MGI:5442217, RGD:13792537 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IBA
ISO
PMID:21873635
(PMID:16387653)
RGD PMID:16387653, PMID:21873635 RGD:13792537 NCBI chr15:2,811,933...2,966,833
Ensembl chr15:2,813,537...2,966,576
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO
ISS
(PMID:16387653)
GO_REF:0000024
RGD
UniProt
PMID:16387653 GO_REF:0000024 NCBI chr10:83,095,067...83,128,342
Ensembl chr10:83,095,068...83,128,297
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20363964)
Ensembl
RGD
PMID:20363964 GO_REF:0000107 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G LOC690283 similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:60,105,788...60,108,103
Ensembl chr 1:60,106,034...60,107,039
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416
Ensembl chr 9:47,186,558...47,244,416
JBrowse link
G Mbip MAP3K12 binding inhibitory protein 1 involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr 6:77,226,439...77,243,696
Ensembl chr 6:77,226,439...77,243,677
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,879,304...12,917,069
Ensembl chr20:12,879,278...12,917,039
JBrowse link
G Myod1 myogenic differentiation 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5508271|PMID:15706034)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15706034 GO_REF:0000024 GO_REF:0000107 MGI:5508271 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Myog myogenin NOT|involved_in ISO (MGI:5508271|PMID:15706034) RGD PMID:15706034 MGI:5508271 NCBI chr13:51,126,459...51,129,048
Ensembl chr13:51,126,459...51,129,048
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,881,635...11,902,139
Ensembl chr10:11,881,739...11,901,785
JBrowse link
G Per1 period circadian regulator 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:5559671|PMID:14645221)
(PMID:14645221)
Ensembl
RGD
PMID:14645221 GO_REF:0000107 MGI:5559671 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:18838386) RGD PMID:18838386 NCBI chr 5:78,380,813...78,384,047
Ensembl chr 5:78,380,816...78,384,047
JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO
IBA
(PMID:18838386)
PMID:21873635
RGD PMID:18838386, PMID:21873635 RGD:13792537 NCBI chr 1:198,066,974...198,100,494
Ensembl chr 1:198,067,066...198,100,493
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (PMID:20139074) RGD PMID:20139074 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component involved_in IBA
ISO
PMID:21873635
(PMID:11564863)
RGD PMID:11564863, PMID:21873635 RGD:13792537 NCBI chr 9:18,249,565...18,604,814
Ensembl chr 9:18,319,246...18,371,856
JBrowse link
G Supt7l SPT7 like, STAGA complex subunit gamma involved_in IBA
ISO
PMID:21873635
(PMID:11564863)
RGD PMID:11564863, PMID:21873635 RGD:13792537 NCBI chr 6:26,241,672...26,251,810
Ensembl chr 6:26,241,672...26,251,809
JBrowse link
G Tada1 transcriptional adaptor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:11564863)
Ensembl
RGD
PMID:11564863 GO_REF:0000107 NCBI chr13:84,588,587...84,602,542
Ensembl chr13:84,588,351...84,603,134
JBrowse link
G Tada2a transcriptional adaptor 2A involved_in ISO (PMID:9674425) RGD PMID:9674425 NCBI chr10:71,393,701...71,441,435
Ensembl chr10:71,393,692...71,441,389
JBrowse link
G Tada3 transcriptional adaptor 3 involved_in ISO
IBA
(PMID:11564863), (PMID:18838386)
PMID:21873635
RGD PMID:11564863 PMID:18838386, PMID:21873635 RGD:13792537 NCBI chr 4:145,318,417...145,330,291
Ensembl chr 4:145,318,435...145,329,878
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:11564863), (PMID:9674425) RGD PMID:9674425 PMID:11564863 NCBI chr 1:170,585,160...170,586,428
Ensembl chr 1:170,585,167...170,586,603
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:11564863) RGD PMID:11564863 NCBI chr 5:150,459,701...150,476,521
Ensembl chr 5:150,459,713...150,475,186