LOC100990341 (protein SET-like) - Rat Genome Database

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Gene: LOC100990341 (protein SET-like) Pan paniscus
Analyze
Symbol: LOC100990341
Name: protein SET-like
RGD ID: 11911967
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); INVOLVED IN nucleosome assembly (inferred); FOUND IN chromatin (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100982334
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22153,904,450 - 153,906,240 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13153,909,181 - 153,910,971 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03153,042,682 - 153,043,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,451,308 - 19,452,158 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034957645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034957645   ⟹   XP_034813536
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22153,904,450 - 153,906,240 (+)NCBI
NHGRI_mPanPan13153,909,181 - 153,910,971 (+)NCBI
Mhudiblu_PPA_v03153,042,682 - 153,043,649 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034813536 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016319.1
Reference Protein Sequences
RefSeq Acc Id: XP_034813536   ⟸   XM_034957645
- UniProtKB: A0A2R9AMY1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031281 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039014.1 UniProtKB/TrEMBL
Gene3D-CATH Nucleosome assembly protein UniProtKB/TrEMBL
InterPro NAP-like_sf UniProtKB/TrEMBL
  NAP_family UniProtKB/TrEMBL
NCBI Gene LOC100990341 ENTREZGENE
PANTHER PROTEIN SET UniProtKB/TrEMBL
  TESTIS-SPECIFIC Y-ENCODED PROTEIN UniProtKB/TrEMBL
Pfam NAP UniProtKB/TrEMBL
Superfamily-SCOP NAP-like UniProtKB/TrEMBL
UniProt A0A2R9AMY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100990341  protein SET-like  LOC100990341  protein SET pseudogene  Symbol and/or name change 5135510 APPROVED
2020-06-11 LOC100990341  protein SET pseudogene  LOC100982334  protein SET pseudogene  Data merged from RGD:11891137 737654 PROVISIONAL