LOC100993446 (histone H1.8) - Rat Genome Database

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Gene: LOC100993446 (histone H1.8) Pan paniscus
Analyze
Symbol: LOC100993446
Name: histone H1.8
RGD ID: 11937746
Description: ENCODES a protein that exhibits nucleosomal DNA binding (ortholog); INVOLVED IN negative regulation of stem cell differentiation (ortholog); nucleosome positioning (ortholog); regulation of DNA methylation (ortholog); ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN female germ cell nucleus (ortholog); nucleolus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: histone H1oo
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13133,952,981 - 133,961,243 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,952,981 - 133,961,243 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03126,600,616 - 126,609,319 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100993446
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13133,952,981 - 133,961,243 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,952,981 - 133,961,243 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03126,600,616 - 126,609,319 (+)NCBIMhudiblu_PPA_v0panPan3
H1-8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3129,543,175 - 129,551,467 (+)EnsemblGRCh38hg38GRCh38
GRCh383129,543,175 - 129,555,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373129,262,018 - 129,270,310 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,744,747 - 130,752,894 (+)NCBINCBI36hg18NCBI36
Build 343130,744,754 - 130,752,902NCBI
Celera3127,688,886 - 127,697,033 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3126,645,251 - 126,653,398 (+)NCBIHuRef
CHM1_13129,225,166 - 129,233,313 (+)NCBICHM1_1
H1f8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,921,892 - 115,927,203 (+)NCBIGRCm39mm39
GRCm39 Ensembl6115,921,899 - 115,927,197 (+)Ensembl
GRCm386115,944,931 - 115,950,242 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,944,938 - 115,950,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv376115,894,957 - 115,900,251 (+)NCBIGRCm37mm9NCBIm37
MGSCv366115,910,558 - 115,915,852 (+)NCBImm8
Celera6117,780,259 - 117,785,526 (+)NCBICelera
Cytogenetic Map6E3NCBI
H1f8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24148,993,133 - 148,998,254 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4148,993,133 - 148,998,254 (+)Ensembl
Rnor_6.04147,844,658 - 147,849,779 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,844,658 - 147,849,779 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,128,369 - 211,133,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,070,310 - 152,075,730 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4137,882,795 - 137,887,916 (+)NCBICelera
Cytogenetic Map4q42NCBI
LOC102023622
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542917,778,193 - 17,783,307 (-)NCBIChiLan1.0ChiLan1.0
H1-8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,614,822 - 5,619,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,617,001 - 5,624,352 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,652,311 - 5,656,625 (-)NCBI
ROS_Cfam_1.0205,644,597 - 5,648,935 (-)NCBI
UMICH_Zoey_3.1205,360,461 - 5,364,777 (-)NCBI
UNSW_CanFamBas_1.0205,713,467 - 5,717,792 (-)NCBI
UU_Cfam_GSD_1.0205,689,100 - 5,693,425 (-)NCBI
LOC101971055
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,019,649 - 18,024,261 (+)NCBI
SpeTri2.0NW_004936602885,478 - 890,014 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H1FOO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,938,024 - 68,942,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,921,491 - 68,943,061 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,146,765 - 76,175,567 (+)NCBISscrofa10.2Sscrofa10.2susScr3
H1FOO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,497,111 - 51,506,007 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041114,972,161 - 114,980,455 (+)NCBIVero_WHO_p1.0
LOC101700059
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624872533,877 - 539,770 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000028891   ⟹   ENSPPAP00000006974
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3133,952,981 - 133,961,243 (+)Ensembl
RefSeq Acc Id: XM_003829436   ⟹   XP_003829484
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.13133,952,981 - 133,961,243 (+)NCBI
Mhudiblu_PPA_v03126,600,616 - 126,609,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014344379   ⟹   XP_014199865
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.13133,958,167 - 133,961,243 (+)NCBI
Mhudiblu_PPA_v03126,606,199 - 126,609,319 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829484 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199865 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003829484   ⟸   XM_003829436
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014199865   ⟸   XM_014344379
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000006974   ⟸   ENSPPAT00000028891


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026022 Ensembl, ENTREZGENE
NCBI Gene LOC100993446 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100993446  histone H1.8  LOC100993446  histone H1oo  Symbol and/or name change 5135510 APPROVED