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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex subunit organization
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Accession:GO:0071824 term browser browse the term
Definition:Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA complex.
Synonyms:exact_synonym: protein-DNA complex subunit organisation



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CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,013,869...15,189,312
Ensembl chr17:15,014,058...15,189,304
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA
(PMID:19410544), (PMID:19410545)
PMID:21873635
RGD PMID:19410544 PMID:19410545 PMID:21873635 RGD:13792537 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:5441069 (MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971 PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250
JBrowse link
centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpi centromere protein I involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,515,919...97,567,671
Ensembl chr  X:97,515,972...97,567,657
JBrowse link
G Cenpo centromere protein O involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:27,203,642...27,218,394
Ensembl chr 6:27,188,537...27,218,314
JBrowse link
G Cenpv centromere protein V involved_in ISO (PMID:18772885) RGD PMID:18772885 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IBA
(PMID:26681308)
PMID:21873635
RGD PMID:26681308 PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IBA
ISO
PMID:21873635
(PMID:11125146)
RGD PMID:11125146 PMID:21873635 RGD:13792537 NCBI chr19:50,620,713...50,625,659
Ensembl chr19:50,620,713...50,625,659
JBrowse link
G Gmnn geminin, DNA replication inhibitor involved_in ISO (PMID:11125146) RGD PMID:11125146 NCBI chr17:40,301,771...40,310,054
Ensembl chr17:40,301,808...40,310,054
JBrowse link
DNA-templated transcription open complex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:14580349) RGD PMID:14580349 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32e acidic nuclear phosphoprotein 32 family member E involved_in ISO
IBA
(PMID:24463511)
PMID:21873635
RGD PMID:24463511 PMID:21873635 RGD:13792537 NCBI chr 2:183,472,600...183,489,057
Ensembl chr 2:183,472,609...183,489,054
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISS
ISO
GO_REF:0000024
(MGI:3693383|PMID:12509435)
UniProt
RGD
PMID:12509435 GO_REF:0000024 MGI:3693383 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Ptma prothymosin alpha acts_upstream_of_or_within ISO (MGI:4457993|PMID:20434447) RGD PMID:20434447 MGI:4457993 NCBI chr 9:87,176,251...87,180,333
Ensembl chr 9:87,176,230...87,180,333
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:4441228|PMID:20153262)
UniProt
RGD
PMID:20153262 GO_REF:0000024 MGI:4441228 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) RGD PMID:26109053 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO
IBA
UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126)
PMID:21873635
RGD PMID:26974126 PMID:21873635 RGD:13792537 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A involved_in ISO (PMID:11682612) RGD PMID:11682612 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
JBrowse link
G Cenpc centromere protein C involved_in ISO
IBA
(PMID:21529714)
PMID:21873635
RGD PMID:21529714 PMID:21873635 RGD:13792537 NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476
JBrowse link
G Cenpe centromere protein E involved_in ISO (PMID:9763420) RGD PMID:9763420 NCBI chr 2:223,637,035...223,695,692
Ensembl chr 2:223,636,998...223,695,669
JBrowse link
G Cenph centromere protein H involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,894,253...31,910,182
Ensembl chr 2:31,894,667...31,910,154
JBrowse link
G Cenpk centromere protein K involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:35,360,132...35,421,372
Ensembl chr 2:35,360,132...35,385,706
JBrowse link
G Cenpn centromere protein N involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:44,971,265...44,994,019
Ensembl chr19:44,968,308...44,994,012
JBrowse link
G Cenpt centromere protein T involved_in ISO
ISS
(PMID:21529714)
GO_REF:0000024
RGD
UniProt
PMID:21529714 GO_REF:0000024 NCBI chr19:33,734,684...33,741,159
Ensembl chr19:33,734,685...33,741,142
JBrowse link
G Cenpw centromere protein W involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21695110)
UniProt
RGD
PMID:21695110 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:27,525,324...27,530,464
Ensembl chr 1:27,525,324...27,530,464
JBrowse link
G Dlgap5 DLG associated protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:20,633,964...20,664,569
Ensembl chr15:20,633,966...20,664,518
JBrowse link
G Mis12 MIS12 kinetochore complex component involved_in IBA
ISO
PMID:21873635
(PMID:16585270)
RGD PMID:16585270 PMID:21873635 RGD:13792537 NCBI chr10:55,739,590...55,747,915
Ensembl chr10:55,739,564...55,751,068
JBrowse link
G Pogz pogo transposable element derived with ZNF domain involved_in ISO (PMID:20562864) RGD PMID:20562864 NCBI chr 2:182,394,269...182,440,711
Ensembl chr 2:182,380,768...182,440,707
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
mitotic DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA
(PMID:8524305)
GO_REF:0000107
RGD
Ensembl
PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
negative regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp827 zinc finger protein 827 involved_in ISO (PMID:25150861) RGD PMID:25150861 NCBI chr19:28,720,568...28,887,381
Ensembl chr19:28,721,021...28,887,191
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040686.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) RGD PMID:20538007 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) RGD PMID:12842904 MGI:2675150 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO
ISS
(PMID:20651253)
GO_REF:0000024
RGD
UniProt
PMID:20651253 GO_REF:0000024 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO
ISS
(PMID:18406326)
GO_REF:0000024
RGD
UniProt
PMID:18406326 GO_REF:0000024 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Daxx death-domain associated protein involved_in ISO
IBA
(PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)
PMID:21873635
RGD PMID:20504901 PMID:20651253 PMID:21873635 MGI:5567907, RGD:13792537 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) RGD PMID:33857403 NCBI chr15:3,923,842...3,928,118
Ensembl chr15:3,923,268...3,928,118
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO
ISS
IEA
(PMID:25990725), (PMID:27552915)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:25990725 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G H1f0 H1.0 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
(PMID:24699735)
PMID:21873635
UniProt
RGD
PMID:17261847 PMID:23884607 PMID:24699735 PMID:21873635 GO_REF:0000024 MGI:3702345 MGI:5502464, RGD:13792537 NCBI chr17:41,172,041...41,172,510 JBrowse link
G H2bc12 H2B clustered histone 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,485,746...42,486,126 JBrowse link
G H2bu1 H2B.U histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,367,824...41,368,902
Ensembl chr17:41,368,386...41,368,856
JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,529,860...41,532,577 JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H3f4 H3.4 histone involved_in ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,797...43,741,207 JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f16 H4 histone 16 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f3 H1.3 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,704,740...42,705,130
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist1h2bg histone cluster 1, H2bg involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,571,278...41,571,658
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,716,433...42,718,046
Ensembl chr17:42,673,067...42,718,095
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,722,805...42,723,925
Ensembl chr17:42,723,450...42,723,911
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,311...183,837,721
Ensembl chr 2:183,837,303...183,837,752
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Hist3h2ba histone cluster 3, H2ba involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,725,836...43,726,465
Ensembl chr10:43,724,930...43,727,107
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC102548682 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC317165 similar to Set alpha isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:39,589,341...39,596,429
Ensembl chr18:39,589,341...39,596,429
JBrowse link
G LOC499544 LRRGT00154 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:60,977,315...61,004,442
Ensembl chr 2:60,977,315...61,004,442
JBrowse link
G LOC499843 LRRGT00091 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:87,462,365...87,492,138
Ensembl chr 3:87,462,365...87,492,138
JBrowse link
G LOC500948 LRRGT00073 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:14,286,270...14,309,443
Ensembl chr 8:14,286,270...14,309,443
JBrowse link
G LOC684444 similar to HIStone family member (his-41) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:30,387,094...30,387,613
Ensembl chr 2:30,386,982...30,387,633
JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC684841 similar to CG31613-PA involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC690126 hypothetical protein LOC690126 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,797,721...183,800,653 JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:2156014 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:21981917)
UniProt
RGD
PMID:21981917 GO_REF:0000024 NCBI chr10:11,622,554...11,653,078
Ensembl chr10:11,587,916...11,642,755
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593
JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:68,174,051...68,176,449
Ensembl chr  X:68,173,987...68,176,666
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,347,595...88,350,393
Ensembl chr  X:88,347,598...88,350,393
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in ISO
IBA
IEA
ISS
(PMID:9325046)
PMID:21873635
GO_REF:0000107
(MGI:5897488|PMID:28366643)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9325046 PMID:28366643 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5897488, RGD:13792537 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:88,022,670...88,024,988
Ensembl chr 4:88,022,569...88,024,654
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) RGD PMID:25615412 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362
JBrowse link
G Pkn3 protein kinase N3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,350,082...13,363,572
Ensembl chr 3:13,335,041...13,363,567
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,084,674...118,085,850
Ensembl chr 7:118,084,696...118,085,850
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G RGD1563307 similar to Set beta isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,449,036...86,453,703
Ensembl chr  X:119,908,942...119,909,886
Ensembl chr 1:119,908,942...119,909,886
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835), (PMID:12972596) RGD PMID:11691835 PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,334,564...13,345,598
Ensembl chr 3:13,335,041...13,363,567
JBrowse link
G Setsip SET like protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:53,561,262...53,562,780
Ensembl chr19:53,561,190...53,563,819
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:11691835), (PMID:12972596), (PMID:14759371) RGD PMID:11691835 PMID:12972596 PMID:14759371 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:23378026) RGD PMID:23378026 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581
JBrowse link
G Tspy1 testis specific protein, Y-linked 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tspy26 testis specific protein, Y-linked 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:141,690,653...141,692,729
Ensembl chr 3:141,689,899...141,692,670
JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,439,478...21,445,208
Ensembl chr  X:21,439,478...21,445,089
JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,098,756...38,100,752
Ensembl chr20:38,098,677...38,103,053
JBrowse link
G Tspyl5 TSPY-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:64,881,092...64,885,538
Ensembl chr 7:64,884,225...64,885,457
JBrowse link
nucleosome disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 5:145,908,181...145,981,609
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27552915)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5502464|PMID:23884607)
UniProt
RGD
PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Hist3h2a histone cluster 3, H2a involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IDA
IEA
ISO
GO_REF:0000107
(PMID:8895581)
Ensembl
RGD
PMID:8895581 PMID:9001244 GO_REF:0000107, RGD:634124 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 8:110,111,097...110,214,727
Ensembl chr 8:110,111,122...110,214,720
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr10:91,193,752...91,202,817
Ensembl chr10:91,193,752...91,204,341
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in ISO
IEA
(PMID:8895581)
GO_REF:0000107
RGD
Ensembl
PMID:8895581 GO_REF:0000107 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in ISO (PMID:16902406) RGD PMID:16902406 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in ISO (PMID:16902406) RGD PMID:16902406 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS
(PMID:10781074)
GO_REF:0000024
RGD
UniProt
PMID:10781074 GO_REF:0000024 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd1 chromodomain helicase DNA binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:127,188,146...127,317,041
Ensembl chr 1:127,190,059...127,300,502
JBrowse link
G Lin54 lin-54 DREAM MuvB core complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27465258)
GO_REF:0000107
RGD
Ensembl
PMID:27465258 GO_REF:0000107 NCBI chr14:9,129,775...9,188,244
Ensembl chr14:9,130,336...9,187,790
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23652018) RGD PMID:23652018 NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:23325844) RGD PMID:23325844 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5514340 (MGI:5506835|PMID:23637614)
RGD PMID:23637614 PMID:21873635 MGI:5506835, RGD:13792537 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885 PMID:21873635 RGD:13792537 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
ISO
PMID:21873635
(MGI:3041983|PMID:14612388)
RGD PMID:14612388 PMID:21873635 MGI:3041983, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27043296) RGD PMID:27043296 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
positive regulation of histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5913510|PMID:28694333)
UniProt
RGD
PMID:28694333 GO_REF:0000024 MGI:5913510 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (MGI:62922|PMID:8215422) RGD PMID:8215422 MGI:62922 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993
JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Esr1 estrogen receptor 1 involved_in ISO
IEA
(PMID:9841876)
GO_REF:0000107
RGD
Ensembl
PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:5317044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3820325|PMID:19056892) RGD PMID:19056892 MGI:3820325 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:24270157) RGD PMID:24270157 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340
JBrowse link
protein localization to kinetochore involved in kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kntc1 kinetochore associated 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,769,020...32,839,617
Ensembl chr12:32,769,020...32,839,561
JBrowse link
protein-DNA complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 IDA p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (MGI:1354027|PMID:10692439), (MGI:3624193|PMID:16603706) RGD PMID:10692439 PMID:16603706 MGI:1354027 MGI:3624193 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Hnf1b HNF1 homeobox B IMP RGD PMID:9545279 RGD:2312721 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 IMP RGD PMID:16135793 RGD:2303115 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905
JBrowse link
G Tcf4 transcription factor 4 involved_in ISO (MGI:85411|PMID:8978694) RGD PMID:8978694 MGI:85411 NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425
JBrowse link
protein-DNA complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870
JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:5474462 (MGI:5474379|PMID:23570311) RGD PMID:23570311 MGI:5474379 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf4 ring finger protein 4 involved_in ISO
IEA
ISS
(PMID:20212317)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20212317 GO_REF:0000024 GO_REF:0000107 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566
JBrowse link
G Senp6 SUMO specific peptidase 6 involved_in IBA
ISO
PMID:21873635
(PMID:20212317)
RGD PMID:20212317 PMID:21873635 RGD:13792537 NCBI chr 8:80,988,675...81,071,606
Ensembl chr 8:80,989,052...81,067,170
JBrowse link
G Trappc12 trafficking protein particle complex subunit 12 involved_in ISO (PMID:25918224) RGD PMID:25918224 NCBI chr 6:45,321,496...45,386,967
Ensembl chr 6:45,321,497...45,386,952
JBrowse link
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1928312|PMID:8641287)
RGD PMID:8641287 PMID:21873635 MGI:1928312, RGD:13792537 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
ISS
(PMID:21921199)
GO_REF:0000024
RGD
UniProt
PMID:21921199 GO_REF:0000024 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593
JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971
JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dr1 down-regulator of transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IBA
(PMID:7958899), (PMID:8626665)
PMID:21873635
RGD PMID:7958899 PMID:8626665 PMID:21873635 RGD:13792537 NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:3029109), (PMID:8413225), (PMID:9841876)
Ensembl
UniProt
RGD
PMID:3029109 PMID:8413225 PMID:9841876 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
MGI:3606185 (MGI:5918349|PMID:28893950)
RGD PMID:27007846 PMID:28893950 MGI:5918349 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO
IBA
(PMID:27007846)
PMID:21873635
RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO
IBA
(PMID:27007846)
PMID:21873635
RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IBA
(PMID:27007846)
PMID:21873635
RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO
IBA
(PMID:27007846)
PMID:21873635
RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023
JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401
JBrowse link
G Taf7l2 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:51,763,259...51,764,401 JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IBA
IEA
(PMID:27007846)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:27007846 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:27007846), (PMID:9841876) RGD PMID:9841876 PMID:27007846 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:31,457,523...31,470,119
Ensembl chr 2:31,378,924...31,470,119
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brdt bromodomain testis associated involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5447877|PMID:22922464)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22922464 GO_REF:0000024 GO_REF:0000107 MGI:5447877 NCBI chr14:2,421,094...2,445,842
Ensembl chr14:2,387,796...2,445,842
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5559810|PMID:24252660)
UniProt
RGD
PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:2682484 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5502464|PMID:23884607)
UniProt
RGD
PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IBA
ISO
PMID:21873635
(MGI:5494329|PMID:23706739)
RGD PMID:23706739 PMID:21873635 MGI:5494329, RGD:13792537 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:5905675|PMID:28552346)
UniProt
RGD
PMID:28552346 GO_REF:0000024 MGI:5905675 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tnp1 transition protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
UniProt
RGD
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Tnp2 transition protein 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538
JBrowse link
transcription open complex formation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278
JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    cellular process 17431
      cellular component organization or biogenesis 6532
        cellular component organization 6307
          protein-containing complex organization 1761
            protein-DNA complex subunit organization 214
              nucleosome organization + 132
              protein-DNA complex assembly + 177
              protein-DNA complex disassembly + 18
              protein-DNA complex remodeling + 2
paths to the root