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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin remodeling
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Accession:GO:0006338 term browser browse the term
Definition:Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
Synonyms:exact_synonym: chromatin modeling;   chromatin modelling;   chromatin remodelling
 narrow_synonym: ATP-dependent chromatin remodeling;   ATP-dependent chromatin remodelling
 alt_id: GO:0043044



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chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07028349.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:58,274,519...58,277,290 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Actl6a actin-like 6A acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1314932|PMID:9845365)
(PMID:11726552), (PMID:21303910)
PMID:21873635
RGD PMID:9845365 PMID:11726552 PMID:21303910 PMID:21873635 MGI:1314932, RGD:13792537 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actl6b actin-like 6B involved_in ISO
IBA
(PMID:11726552)
PMID:21873635
RGD PMID:11726552 PMID:21873635 RGD:13792537 NCBI chr12:19,124,887...19,141,419
Ensembl chr12:19,124,916...19,141,376
JBrowse link
G Actr5 actin related protein 5 involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr8 actin related protein 8 involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Arid1a AT-rich interaction domain 1A involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:11726552)
PMID:21873635
MGI:3796520 (MGI:3789431|PMID:18448678)
RGD PMID:11726552 PMID:18448678 PMID:21873635 MGI:3789431, RGD:13792537 NCBI chr 5:145,908,181...145,981,609
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
G Arid1b AT-rich interaction domain 1B involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:20651253)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20651253 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in IEA
ISO
GO_REF:0000002
(PMID:10880450)
InterPro
RGD
PMID:10880450 GO_REF:0000002 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B acts_upstream_of_or_within
involved_in
ISO (MGI:2179578|PMID:11980720)
(PMID:15543136)
RGD PMID:11980720 PMID:15543136 MGI:2179578 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A acts_upstream_of_or_within ISO MGI:1935129 (MGI:2149896|PMID:11532953) RGD PMID:11532953 MGI:2149896 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Bptf bromodomain PHD finger transcription factor involved_in ISO (PMID:14609955) RGD PMID:14609955 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
JBrowse link
G Brd2 bromodomain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Brd3 bromodomain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577
JBrowse link
G Brd4 bromodomain containing 4 involved_in ISO
IBA
(PMID:23728299)
PMID:21873635
RGD PMID:23728299 PMID:21873635 RGD:13792537 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Brdt bromodomain testis associated involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:5430881|PMID:19794495)
(MGI:2668282|PMID:12861021)
GO_REF:0000107
RGD
Ensembl
PMID:12861021 PMID:19794495 PMID:22215678 PMID:21873635 GO_REF:0000107 MGI:2668282 MGI:5430881, RGD:9586361, RGD:13792537 NCBI chr14:2,421,094...2,445,842
Ensembl chr14:2,387,796...2,445,842
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader involved_in IBA
ISO
PMID:21873635
(PMID:15640247)
RGD PMID:15640247 PMID:21873635 RGD:13792537 NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3616364|PMID:16415155) RGD PMID:16415155 MGI:3616364 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like involved_in ISO
IBA
(PMID:19661379)
PMID:21873635
RGD PMID:19661379 PMID:21873635 RGD:13792537 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 involved_in ISO (PMID:30397230), (PMID:9790534) RGD PMID:9790534 PMID:30397230 NCBI chr10:54,063,629...54,090,030
Ensembl chr10:54,063,629...54,090,047
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:2176467|MGI:4433295 (MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:5694290 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in ISO
ISS
(PMID:18378692)
GO_REF:0000024
RGD
UniProt
PMID:18378692 GO_REF:0000024 NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:10880450) RGD PMID:10880450 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Daxx death-domain associated protein involved_in ISO
IEA
(PMID:20651253)
GO_REF:0000107
RGD
Ensembl
PMID:20651253 GO_REF:0000107 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dr1 down-regulator of transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638
JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) RGD PMID:19026781 MGI:3820717 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
JBrowse link
G Foxa1 forkhead box A1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4456944|PMID:15748903)
Ensembl
RGD
PMID:15748903 GO_REF:0000107 MGI:4456944 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gatad1 GATA zinc finger domain containing 1 involved_in ISO (PMID:20850016) RGD PMID:20850016 NCBI chr 4:30,507,530...30,519,109
Ensembl chr 4:30,507,538...30,519,107
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr16:19,429,578...19,520,320
Ensembl chr16:19,429,578...19,519,587
JBrowse link
G Gatad2b GATA zinc finger domain containing 2B involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr 2:175,748,594...175,829,837
Ensembl chr 2:175,749,433...175,825,542
JBrowse link
G Hcfc1 host cell factor C1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638
JBrowse link
G Hcfc2 host cell factor C2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:20,983,986...21,019,826
Ensembl chr 7:20,991,017...21,019,801
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO
IEA
(PMID:9790534)
GO_REF:0000107
RGD
Ensembl
PMID:9790534 GO_REF:0000107 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO (PMID:18850004) RGD PMID:18850004 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO MGI:2154359 (MGI:3699537|PMID:11733582)
(MGI:2388420|PMID:12367519)
RGD PMID:11733582 PMID:12367519 MGI:2388420 MGI:3699537 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80b INO80 complex subunit B involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
(PMID:21303910)
InterPro
RGD
PMID:21303910 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456
JBrowse link
G Ino80c INO80 complex subunit C involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80d INO80 complex subunit D involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA
ISO
GO_REF:0000002
(PMID:21303910)
InterPro
RGD
PMID:21303910 GO_REF:0000002 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:17707232) RGD PMID:17707232 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Kdm4a lysine demethylase 4A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm4b lysine demethylase 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:1,158,737...1,237,228
Ensembl chr 9:1,158,752...1,236,543
JBrowse link
G Kdm4c lysine demethylase 4C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Kdm4d lysine demethylase 4D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G Kdm5a lysine demethylase 5A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Kdm5b lysine demethylase 5B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Kdm5c lysine demethylase 5C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870
JBrowse link
G Kdm5d lysine demethylase 5D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:527,069...624,019
Ensembl chr  Y:530,401...624,018
JBrowse link
G Kdm6a lysine demethylase 6A involved_in ISO (MGI:4866963|PMID:21095589) RGD PMID:21095589 MGI:4866963 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO (MGI:4866963|PMID:21095589) RGD PMID:21095589 MGI:4866963 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
G Klf1 Kruppel like factor 1 acts_upstream_of_or_within ISO (MGI:3056025|PMID:15489291) RGD PMID:15489291 MGI:3056025 NCBI chr19:23,250,627...23,253,802
Ensembl chr19:23,250,631...23,253,758
JBrowse link
G LOC103694314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:26,128,292...26,131,416 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in ISO
IEA
(PMID:9790534)
GO_REF:0000107
RGD
Ensembl
PMID:9790534 GO_REF:0000107 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 involved_in ISO
IEA
(PMID:9790534)
GO_REF:0000107
RGD
Ensembl
PMID:9790534 GO_REF:0000107 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165
JBrowse link
G Mcrs1 microspherule protein 1 involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2158698|MGI:88393 (MGI:3616131|PMID:15044367), (MGI:3616364|PMID:16415155) RGD PMID:15044367 PMID:16415155 MGI:3616131 MGI:3616364 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Mier1 MIER1 transcriptional regulator involved_in ISO (PMID:12482978) RGD PMID:12482978 NCBI chr 5:117,876,012...117,927,592
Ensembl chr 5:117,870,382...117,927,589
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:23260667) RGD PMID:23260667 NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343
JBrowse link
G Mpnd MPN domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:839,473...846,446
Ensembl chr 9:840,143...846,439
JBrowse link
G Mta1 metastasis associated 1 involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Mta2 metastasis associated 1 family, member 2 involved_in ISO
IEA
(PMID:9790534)
GO_REF:0000107
RGD
Ensembl
PMID:9790534 GO_REF:0000107 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946
JBrowse link
G Mta3 metastasis associated 1 family, member 3 involved_in ISO (PMID:9790534) RGD PMID:9790534 NCBI chr 6:10,867,028...10,987,221
Ensembl chr 6:10,867,011...10,986,883
JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO
ISS
(PMID:21533051)
GO_REF:0000024
RGD
UniProt
PMID:21533051 GO_REF:0000024 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 involved_in ISO
IBA
(PMID:17707232)
PMID:21873635
RGD PMID:17707232 PMID:21873635 RGD:13792537 NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359
JBrowse link
G Npm1 nucleophosmin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:12714744)
PMID:21873635
MGI:2182141 (MGI:2662932|PMID:12714744)
RGD PMID:12714744 PMID:21873635 PMID:21873635 MGI:2662932, RGD:13792537, RGD:13792537 NCBI chr15:45,722,494...45,729,246
Ensembl chr15:45,722,400...45,729,726
JBrowse link
G Npm3 nucleophosmin/nucleoplasmin, 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:244,595,638...244,597,623
Ensembl chr 1:244,595,644...244,597,591
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375
JBrowse link
G Nudt5 nudix hydrolase 5 involved_in ISO
IEA
ISS
(PMID:27257257)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27257257 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5688228|PMID:26134869) RGD PMID:26134869 MGI:5688228 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO
ISS
(PMID:23260667)
GO_REF:0000024
RGD
UniProt
PMID:23260667 GO_REF:0000024 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383
JBrowse link
G Pax6 paired box 6 involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831|MGI:3047633 (MGI:5440096|PMID:23070814) RGD PMID:23070814 MGI:5440096 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979
JBrowse link
G Pbrm1 polybromo 1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:10880450) RGD PMID:10880450 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14609955), (PMID:9790534) RGD PMID:9790534 PMID:14609955 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor involved_in ISO
IEA
(PMID:14609955), (PMID:9790534)
GO_REF:0000107
RGD
Ensembl
PMID:9790534 PMID:14609955 GO_REF:0000107 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO PR:O09106 (MGI:2683041|PMID:14645126) RGD PMID:14645126 MGI:2683041 NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA
ISO
PMID:21873635
(PMID:21303910), (PMID:23637611)
RGD PMID:21303910 PMID:23637611 PMID:21873635 RGD:13792537 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Satb1 SATB homeobox 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2386676 (MGI:5295905|PMID:21930775)
RGD PMID:21930775 PMID:21873635 MGI:5295905, RGD:13792537 NCBI chr 9:4,677,817...4,773,061
Ensembl chr 9:4,680,920...4,753,251
JBrowse link
G Satb2 SATB homeobox 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3793380|PMID:18255031)
RGD PMID:18255031 PMID:21873635 MGI:3793380, RGD:13792537 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO MGI:3706668 (MGI:3703453|PMID:17215307) RGD PMID:17215307 MGI:3703453 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 involved_in ISO (PMID:14609955), (PMID:15640247) RGD PMID:14609955 PMID:15640247 NCBI chr  X:126,980,201...127,066,385
Ensembl chr  X:126,994,947...127,066,347
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 NOT|involved_in ISO
IBA
(PMID:22368283)
PMID:21873635
RGD PMID:22368283 PMID:21873635 RGD:13792537 NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in
acts_upstream_of_or_within
IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
MGI:3611933 (MGI:3610843|PMID:16287714)
(PMID:10943845), (PMID:11726552), (PMID:22368283)
InterPro
RGD
PMID:10943845 PMID:11726552 PMID:16287714 PMID:22368283 PMID:9001244 More... GO_REF:0000002 MGI:3610843, RGD:634124, RGD:13792537 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2151152 (MGI:2149896|PMID:11532953), (MGI:2179578|PMID:11980720)
(PMID:10880450), (PMID:15543136), (PMID:9836642)
PMID:21873635
RGD PMID:9836642 PMID:10880450 PMID:11532953 PMID:11980720 PMID:15543136 More... MGI:2149896 MGI:2179578, RGD:13792537 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in ISO
IBA
ISS
(PMID:22960744)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22960744 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:11726552), (PMID:22368283) RGD PMID:11726552 PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in ISO
IBA
(PMID:10078207), (PMID:11018012), (PMID:11726552)
PMID:21873635
RGD PMID:10078207 PMID:11018012 PMID:11726552 PMID:21873635 RGD:13792537 NCBI chr 8:110,111,097...110,214,727
Ensembl chr 8:110,111,122...110,214,720
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in ISO
IBA
(PMID:10078207), (PMID:11018012), (PMID:11726552)
PMID:21873635
RGD PMID:10078207 PMID:11018012 PMID:11726552 PMID:21873635 RGD:13792537 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:11726552), (PMID:12917342) RGD PMID:11726552 PMID:12917342 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in ISO
IEA
(PMID:11726552)
GO_REF:0000002
RGD
InterPro
PMID:11726552 GO_REF:0000002 NCBI chr10:91,193,752...91,202,817
Ensembl chr10:91,193,752...91,204,341
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:11726552) RGD PMID:11726552 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in ISO
IEA
(PMID:11726552)
GO_REF:0000002
RGD
InterPro
PMID:11726552 GO_REF:0000002 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989
JBrowse link
G Smyd1 SET and MYND domain containing 1 acts_upstream_of_or_within ISO PR:O09106 (MGI:2178868|PMID:11923873) RGD PMID:11923873 MGI:2178868 NCBI chr 4:103,195,330...103,252,989
Ensembl chr 4:103,200,322...103,311,766
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610
JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase involved_in ISO (PMID:10949293) RGD PMID:10949293 NCBI chr17:74,756,290...74,775,332
Ensembl chr17:74,756,306...74,775,332
JBrowse link
G Tada2a transcriptional adaptor 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:68,966,502...69,014,149
Ensembl chr10:68,966,502...69,014,105
JBrowse link
G Tada2b transcriptional adaptor 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:74,279,286...74,290,758
Ensembl chr14:74,279,217...74,290,755
JBrowse link
G Tbr1 T-box brain transcription factor 1 involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 3:46,350,237...46,368,397
Ensembl chr 3:46,351,213...46,361,041
JBrowse link
G Tfpt TCF3 fusion partner involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Tnp1 transition protein 1 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:12743712)
GO_REF:0000024
RGD
UniProt
PMID:12743712 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Top1 DNA topoisomerase I involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:22904072)
UniProt
Ensembl
RGD
PMID:22904072 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 3:149,293,658...149,375,405
Ensembl chr 3:149,293,403...149,376,623
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:5295905|PMID:21930775) RGD PMID:21930775 MGI:5295905 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (MGI:85982|PMID:9049305) RGD PMID:9049305 MGI:85982 NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
G Tti1 TELO2 interacting protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,639,048...146,682,945
Ensembl chr 3:146,639,054...146,682,847
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:26816381)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26816381 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539
JBrowse link
G Zfp827 zinc finger protein 827 involved_in ISO (PMID:25150861) RGD PMID:25150861 NCBI chr19:28,720,568...28,887,381
Ensembl chr19:28,721,021...28,887,191
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,013,869...15,189,312
Ensembl chr17:15,014,058...15,189,304
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA
(PMID:19410544), (PMID:19410545)
PMID:21873635
RGD PMID:19410544 PMID:19410545 PMID:21873635 RGD:13792537 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:5441069 (MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971 PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250
JBrowse link
histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067
JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E involved_in ISO
ISS
IBA
(PMID:24463511)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:24463511 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:183,472,600...183,489,057
Ensembl chr 2:183,472,609...183,489,054
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISS
ISO
GO_REF:0000024
(MGI:3693383|PMID:12509435)
UniProt
RGD
PMID:12509435 GO_REF:0000024 MGI:3693383 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Ptma prothymosin alpha acts_upstream_of_or_within ISO (MGI:4457993|PMID:20434447) RGD PMID:20434447 MGI:4457993 NCBI chr 9:87,176,251...87,180,333
Ensembl chr 9:87,176,230...87,180,333
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:4441228|PMID:20153262)
UniProt
RGD
PMID:20153262 GO_REF:0000024 MGI:4441228 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(PMID:26109053)
PMID:21873635
RGD PMID:26109053 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581
JBrowse link
G Srcap Snf2-related CREBBP activator protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO
IBA
UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126)
PMID:21873635
RGD PMID:26974126 PMID:21873635 RGD:13792537 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07031963.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07040686.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G AABR07058615.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO
IEA
(PMID:20538007)
GO_REF:0000107
RGD
Ensembl
PMID:20538007 GO_REF:0000107 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) RGD PMID:12842904 MGI:2675150 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO
ISS
(PMID:20651253)
GO_REF:0000024
RGD
UniProt
PMID:20651253 GO_REF:0000024 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO
IEA
(PMID:14759371)
GO_REF:0000107
RGD
Ensembl
PMID:14759371 GO_REF:0000107 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO
ISS
(PMID:18406326)
GO_REF:0000024
RGD
UniProt
PMID:18406326 GO_REF:0000024 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO
IEA
(PMID:14759371)
GO_REF:0000107
RGD
Ensembl
PMID:14759371 GO_REF:0000107 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Daxx death-domain associated protein involved_in ISO
IEA
IBA
(PMID:20504901), (PMID:20651253)
GO_REF:0000107
(MGI:5567907|PMID:20651253)
PMID:21873635
RGD
Ensembl
PMID:20504901 PMID:20651253 PMID:21873635 GO_REF:0000107 MGI:5567907, RGD:13792537 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO
IEA
(PMID:33857403)
GO_REF:0000107
RGD
Ensembl
PMID:33857403 GO_REF:0000107 NCBI chr15:3,923,842...3,928,118
Ensembl chr15:3,923,268...3,928,118
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO
ISS
IEA
(PMID:25990725), (PMID:27552915)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:25990725 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G H1f0 H1.0 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
(PMID:24699735)
PMID:21873635
UniProt
RGD
PMID:17261847 PMID:23884607 PMID:24699735 PMID:21873635 GO_REF:0000024 MGI:3702345 MGI:5502464, RGD:13792537 NCBI chr17:41,172,041...41,172,510 JBrowse link
G H2bc12 H2B clustered histone 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,485,746...42,486,126 JBrowse link
G H2bc9 H2B clustered histone 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,470,593...42,478,605 JBrowse link
G H2bu1 H2B.U histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,367,824...41,368,902
Ensembl chr17:41,368,386...41,368,856
JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,529,860...41,532,577 JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H3f4 H3.4 histone involved_in ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,797...43,741,207 JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f16 H4 histone 16 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f3 H1.3 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,704,740...42,705,130
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist1h2bc histone cluster 1, H2bc involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,692,335...42,696,860
Ensembl chr17:42,694,723...42,696,642
JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,792,887...42,793,268 JBrowse link
G Hist1h2bg histone cluster 1, H2bg involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,571,278...41,571,658
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,708,646...42,709,435 JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,716,433...42,718,046
Ensembl chr17:42,673,067...42,718,095
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,432,100...41,441,487
Ensembl chr17:41,429,164...41,442,153
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,722,805...42,723,925
Ensembl chr17:42,723,450...42,723,911
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:183,780,449...183,783,030 JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,311...183,837,721
Ensembl chr 2:183,837,303...183,837,752
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Hist3h2ba histone cluster 3, H2ba involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,725,836...43,726,465
Ensembl chr10:43,724,930...43,727,107
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G LOC100364835 histone cluster 1, H2bd-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,520,767...41,521,240 JBrowse link
G LOC100365043 histone cluster 1, H2bd-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,561,549...41,563,239
Ensembl chr17:41,562,508...41,562,963
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,751,843...42,752,935 JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC102548682 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102549061 histone H2B type 1-N-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,380,058...41,380,685 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC120101889 SET nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,334,564...13,345,598
Ensembl chr 3:13,335,041...13,363,567
JBrowse link
G LOC317165 similar to Set alpha isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:39,589,341...39,596,429
Ensembl chr18:39,589,341...39,596,429
JBrowse link
G LOC499544 LRRGT00154 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:60,977,315...61,004,442
Ensembl chr 2:60,977,315...61,004,442
JBrowse link
G LOC499843 LRRGT00091 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:87,462,365...87,492,138
Ensembl chr 3:87,462,365...87,492,138
JBrowse link
G LOC500948 LRRGT00073 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:14,286,270...14,309,443
Ensembl chr 8:14,286,270...14,309,443
JBrowse link
G LOC684444 similar to HIStone family member (his-41) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:30,387,094...30,387,613
Ensembl chr 2:30,386,982...30,387,633
JBrowse link
G LOC684797 similar to Histone H2B 291B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,534,055...41,534,478 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC684841 similar to CG31613-PA involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC690126 hypothetical protein LOC690126 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,797,721...183,800,653 JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:2156014 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:21981917)
UniProt
RGD
PMID:21981917 GO_REF:0000024 NCBI chr10:11,622,554...11,653,078
Ensembl chr10:11,587,916...11,642,755
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,347,595...88,350,393
Ensembl chr  X:88,347,598...88,350,393
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in IBA
IEA
ISO
ISS
PMID:21873635
GO_REF:0000107
(MGI:5897488|PMID:28366643)
GO_REF:0000024
(PMID:9325046)
Ensembl
RGD
UniProt
PMID:9325046 PMID:28366643 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5897488, RGD:13792537 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:88,022,670...88,024,988
Ensembl chr 4:88,022,569...88,024,654
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) RGD PMID:25615412 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362
JBrowse link
G Pkn3 protein kinase N3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,350,082...13,363,572
Ensembl chr 3:13,335,041...13,363,567
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,084,674...118,085,850
Ensembl chr 7:118,084,696...118,085,850
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G RGD1563307 similar to Set beta isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,449,036...86,453,703
Ensembl chr 1:86,449,044...86,453,811
Ensembl chr  X:86,449,044...86,453,811
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835), (PMID:12972596) RGD PMID:11691835 PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Set SET nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:53,561,262...53,562,780
Ensembl chr19:53,561,190...53,563,819
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:11691835), (PMID:12972596), (PMID:14759371) RGD PMID:11691835 PMID:12972596 PMID:14759371 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(PMID:23378026)
PMID:21873635
RGD PMID:23378026 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581
JBrowse link
G Tspy1 testis specific protein, Y-linked 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tspy26 testis specific protein, Y-linked 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:141,690,653...141,692,729
Ensembl chr 3:141,689,899...141,692,670
JBrowse link
G Tspyl1 TSPY-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,082,003...38,084,562
Ensembl chr20:38,081,951...38,084,554
Ensembl chr20:38,081,951...38,084,554
JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,439,478...21,445,208
Ensembl chr  X:21,439,478...21,445,089
JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,098,756...38,100,752
Ensembl chr20:38,098,677...38,103,053
JBrowse link
G Tspyl5 TSPY-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:64,881,092...64,885,538
Ensembl chr 7:64,884,225...64,885,457
JBrowse link
nucleosome disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 5:145,908,181...145,981,609
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27552915)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5502464|PMID:23884607)
UniProt
RGD
PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Hist3h2a histone cluster 3, H2a involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IDA
IEA
ISO
GO_REF:0000107
(PMID:8895581)
Ensembl
RGD
PMID:8895581 PMID:9001244 GO_REF:0000107, RGD:634124 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 8:110,111,097...110,214,727
Ensembl chr 8:110,111,122...110,214,720
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr10:91,193,752...91,202,817
Ensembl chr10:91,193,752...91,204,341
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in ISO
IEA
(PMID:16902406)
GO_REF:0000107
RGD
Ensembl
PMID:16902406 GO_REF:0000107 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in ISO
IEA
(PMID:16902406)
GO_REF:0000107
RGD
Ensembl
PMID:16902406 GO_REF:0000107 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS
(PMID:10781074)
GO_REF:0000024
RGD
UniProt
PMID:10781074 GO_REF:0000024 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
nucleosome mobilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,135,927...26,136,235 JBrowse link
G Actl6a actin-like 6A involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actr5 actin related protein 5 involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr8 actin related protein 8 involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO
IEA
(PMID:14759371)
GO_REF:0000107
RGD
Ensembl
PMID:14759371 GO_REF:0000107 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Bptf bromodomain PHD finger transcription factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO
IEA
(PMID:14759371)
GO_REF:0000107
RGD
Ensembl
PMID:14759371 GO_REF:0000107 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456
JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80d INO80 complex subunit D involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242
JBrowse link
G Ino80e INO80 complex subunit E involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:109,236,160...109,236,825
Ensembl chr 7:109,236,321...109,236,758
JBrowse link
G Mcrs1 microspherule protein 1 involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in IBA
ISO
PMID:21873635
(PMID:14759371)
RGD PMID:14759371 PMID:21873635 RGD:13792537 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G RGD1560349 similar to histone-fold protein CHRAC17 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:26,135,927...26,136,417 JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Tfpt TCF3 fusion partner involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23652018) RGD PMID:23652018 NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:23325844) RGD PMID:23325844 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:58,274,519...58,277,290 JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO
IEA
(PMID:17099699)
GO_REF:0000107
RGD
Ensembl
PMID:17099699 GO_REF:0000107 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B involved_in ISO
IEA
(MGI:2179578|PMID:11980720)
GO_REF:0000107
RGD
Ensembl
PMID:11980720 GO_REF:0000107 MGI:2179578 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Ctcf CCCTC-binding factor involved_in ISO
IEA
(PMID:18654629)
GO_REF:0000107
RGD
Ensembl
PMID:18654629 GO_REF:0000107 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2665852 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2665857 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5559660|PMID:22868987)
PMID:21873635
CAFA
RGD
PMID:22868987 PMID:21873635 GO_REF:0000024 MGI:5559660, RGD:13792537 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2666743 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) RGD PMID:22046413 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISS
ISO
GO_REF:0000024
(PMID:29072575)
UniProt
RGD
PMID:29072575 GO_REF:0000024 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596), (PMID:9836642) RGD PMID:9836642 PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IBA
ISO
PMID:21873635
(MGI:2179578|PMID:11980720)
(PMID:12972596), (PMID:17099699), (PMID:9836642)
RGD PMID:9836642 PMID:11980720 PMID:12972596 PMID:17099699 PMID:21873635 MGI:2179578, RGD:13792537 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885 PMID:21873635 RGD:13792537 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
ISO
PMID:21873635
(MGI:3041983|PMID:14612388)
RGD PMID:14612388 PMID:21873635 MGI:3041983, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5559810|PMID:24252660)
UniProt
RGD
PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:2682484 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5502464|PMID:23884607)
UniProt
RGD
PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IBA
ISO
PMID:21873635
(MGI:5494329|PMID:23706739)
RGD PMID:23706739 PMID:21873635 MGI:5494329, RGD:13792537 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:5905675|PMID:28552346)
UniProt
RGD
PMID:28552346 GO_REF:0000024 MGI:5905675 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tnp1 transition protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
UniProt
RGD
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Tnp2 transition protein 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          chromatin organization 594
            chromatin remodeling 258
              chromatin remodeling at centromere + 11
              nucleosome organization + 166
Path 2
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          organelle organization 3987
            chromosome organization 1036
              chromatin organization 594
                chromatin remodeling 258
                  chromatin remodeling at centromere + 11
                  nucleosome organization + 166
paths to the root