SMYD3 (SET and MYND domain containing 3)

Gene: SMYD3 (SET and MYND domain containing 3) Pan paniscus

Analyze

Symbol:

SMYD3

Name:

SET and MYND domain containing 3

RGD ID:

11707460

Description:

ENCODES a protein that exhibits histone H3K36 dimethyltransferase activity (inferred); histone H4 methyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); establishment of protein localization (ortholog); myotube cell development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amenorrhea (ortholog); amphetamine abuse (ortholog); developmental and epileptic encephalopathy 54 (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

histone-lysine N-methyltransferase SMYD3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	2,624,092 - 3,383,506 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	2,841,208 - 3,607,222 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	221,371,348 - 222,125,774 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	226,737,739 - 227,481,309 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	226,737,960 - 227,481,191 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

amphetamine abuse (ISO)

developmental and epileptic encephalopathy 54 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

nonprogressive cerebellar ataxia with mental retardation (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to dexamethasone stimulus (IEA,ISO)

establishment of protein localization (IEA,ISO)

myotube cell development (IEA,ISO)

nucleosome assembly (IEA,ISO)

positive regulation of peptidyl-serine phosphorylation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

histone H3K36 dimethyltransferase activity (IEA)

histone H4 methyltransferase activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II complex binding (IEA)

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SMYD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	2,624,092 - 3,383,506 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	2,841,208 - 3,607,222 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	221,371,348 - 222,125,774 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	226,737,739 - 227,481,309 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	226,737,960 - 227,481,191 (-)	Ensembl	panpan1.1		panPan2

SMYD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	245,749,347 - 246,507,279 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	245,749,342 - 246,507,312 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	245,912,649 - 246,670,581 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	243,979,267 - 244,647,334 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	242,238,685 - 242,906,752	NCBI
Celera	1	219,204,089 - 219,959,418 (-)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	216,300,241 - 217,057,123 (-)	NCBI		HuRef
CHM1_1	1	247,184,928 - 247,943,100 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	245,170,078 - 245,930,104 (-)	NCBI		T2T-CHM13v2.0

Smyd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,779,525 - 179,345,618 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	178,779,525 - 179,345,606 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	178,951,960 - 179,518,053 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,951,960 - 179,518,041 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	180,885,162 - 181,448,134 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	180,791,706 - 181,354,678 (-)	NCBI		MGSCv36	mm8
Celera	1	186,017,554 - 186,588,962 (-)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	83.48	NCBI

Smyd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	93,241,274 - 93,798,221 (-)	NCBI		GRCr8
mRatBN7.2	13	90,709,263 - 91,266,209 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	90,709,270 - 91,266,253 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	93,214,478 - 93,771,407 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	94,614,652 - 95,171,578 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,792,563 - 92,346,249 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	97,330,120 - 97,807,813 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	102,581,420 - 102,588,971 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	13	102,350,012 - 102,473,942 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	94,643,716 - 95,108,789 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	90,265,163 - 90,818,620 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

Smyd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	8,768,588 - 9,417,525 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	8,768,365 - 9,417,612 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMYD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	36,561,080 - 37,250,336 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	36,565,901 - 37,250,578 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	36,041,500 - 36,732,806 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	36,391,898 - 37,082,573 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	36,396,600 - 37,082,534 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	36,231,858 - 36,922,858 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	36,245,479 - 36,930,875 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	36,513,397 - 37,199,813 (-)	NCBI		UU_Cfam_GSD_1.0

Smyd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	49,528,419 - 50,211,118 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	4,536,142 - 5,218,657 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	4,536,157 - 5,218,883 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMYD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	18,267,189 - 19,019,642 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	18,267,598 - 19,019,520 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	20,923,785 - 21,568,712 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103230910
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	82,794,748 - 83,531,942 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	85,053,359 - 85,234,932 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smyd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	13,149,649 - 13,943,137 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624771	13,149,547 - 13,943,352 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003807985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008960083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034950165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034950172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057298969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057298991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057298996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000051847 ⟹ ENSPPAP00000028999

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	226,737,960 - 227,481,191 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051854 ⟹ ENSPPAP00000029006

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	227,308,011 - 227,481,191 (-)	Ensembl

RefSeq Acc Id:

XM_003807985 ⟹ XP_003808033

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,624,092 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	2,841,208 - 3,607,222 (+)	NCBI
Mhudiblu_PPA_v0	1	221,371,348 - 222,125,773 (-)	NCBI
PanPan1.1	1	226,737,741 - 227,481,309 (-)	NCBI

Sequence:

show sequence

CGCCCCGCCCCTCGGGCGTACGTGTGCGCGCAGGGCGCAGGCGCGCGGGTCCCGGCAGCCCGTG
AGACGCCCGCTGCTGGACGCGGGTAGCCGTCTGAGGTGCCGGAGCTGCGGGAGGATGGAGCCGC
TGAAGGTGGAAAAGTTCGCAACCGCCAACAGGGGAAACGGGCTGCGCGCCGTGACCCCGCTGCG
CCCCGGAGAGCTGCTCTTCCGCTCGGATCCCTTGGCGTACACGGTGTGCAAGGGCAGTCGTGGC
GTGGTCTGCGACCGCTGCCTTCTCGGGAAGGAAAAGCTGATGCGATGCTCTCAGTGCCGCGTCG
CCAAATACTGTAGTGCTAAGTGTCAGAAAAAAGCTTGGCCAGACCACAAGCGGGAATGCAAATG
CCTTAAAAGCTGCAAGCCCAGATATCCTCCAGACTCCGTTCGACTTCTTGGCAGAGTTGTCTTC
AAACTTATGGATGGAGCACCTTCAGAATCAGAGAAGCTTTACTCATTTTATGATCTGGAGTCAA
ATATTAACAAACTGACTGAAGATAAGAAAGAGGGCCTCAGGCAACTCGTAATGACATTTCAACA
TTTCATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCC
TTTGCAAAAGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTG
GCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTTAA
TGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGC
TACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTG
AATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCA
AGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG
GAGCAGGTTCTGGCCATGTGCCAGGCGATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCA
ACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGA
GGAAGCCTTGTTCTATGCTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCAT
CCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCC
AAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAG
CCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGG
AACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCT
ATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAAT
AAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACGATTATAATAAA
TTCAAAACATTTGGTTGGGGATGC

hide sequence

RefSeq Acc Id:

XM_008960083 ⟹ XP_008958331

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,624,095 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	2,841,211 - 3,607,222 (+)	NCBI
Mhudiblu_PPA_v0	1	221,371,348 - 222,125,774 (-)	NCBI
PanPan1.1	1	226,737,739 - 227,481,305 (-)	NCBI

Sequence:

show sequence

CCGCCCCTCGGGCGTACGTGTGCGCGCAGGGCGCAGGCGCGCGGGTCCCGGCAGCCCGTGAGAC
GCCCGCTGCTGGACGCGGGTAGCCGTCTGAGGTGCCGGAGCTGCGGGAGGATGGAGCCGCTGAA
GGTGGAAAAGTTCGCAACCGCCAACAGGGGAAACGGGCTGCGCGCCGTGACCCCGCTGCGCCCC
GGAGAGCTGCTCTTCCGCTCGGATCCCTTGGCGTACACGGTGTGCAAGGGCAGTCGTGGCGTGG
TCTGCGACCGCTGCCTTCTCGGGAAGGAAAAGCTGATGCGATGCTCTCAGTGCCGCGTCGCCAA
ATACTGTAGTGCTAAGTGTCAGAAAAAAGCTTGGCCAGACCACAAGCGGGAATGCAAATGCCTT
AAAAGCTGCAAGCCCAGATATCCTCCAGACTCCGTTCGACTTCTTGGCAGAGTTGTCTTCAAAC
TTATGGATGGAGCACCTTCAGAATCAGAGAAGCTTTACTCATTTTATGATCTGGAGTCAAATAT
TAACAAACTGACTGAAGATAAGAAAGAGGGCCTCAGGCAACTCGTAATGACATTTCAACATTTC
ATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCCTTTG
CAAAAGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCT
ATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTTAATGGG
CCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACC
TGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATG
TGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTA
TGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGC
AGGTTCTGGCCATGTGCCAGGCGATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACAT
CTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAA
GCCTTGTTCTATGCTACTCGGACCATGGAGCCATACAGGCTTTTGATATTATGAGAGTGACACA
TGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATC
AGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATT
GAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTG
TTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAG
CACGATTATAATAAATTCAAAACATTTGGTTGGGGATGCCA

hide sequence

RefSeq Acc Id:

XM_034950165 ⟹ XP_034806056

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,624,563 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	2,841,674 - 3,607,222 (+)	NCBI
Mhudiblu_PPA_v0	1	221,371,348 - 222,125,310 (-)	NCBI

RefSeq Acc Id:

XM_034950172 ⟹ XP_034806063

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,624,842 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	2,841,967 - 3,607,222 (+)	NCBI
Mhudiblu_PPA_v0	1	221,371,348 - 222,124,968 (-)	NCBI

RefSeq Acc Id:

XM_057298969 ⟹ XP_057154952

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,624,564 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	2,841,826 - 3,607,222 (+)	NCBI

RefSeq Acc Id:

XM_057298991 ⟹ XP_057154974

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,963,298 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	3,187,789 - 3,607,222 (+)	NCBI

RefSeq Acc Id:

XM_057298996 ⟹ XP_057154979

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	2,985,368 - 3,383,506 (+)	NCBI
NHGRI_mPanPan1	1	3,209,865 - 3,607,222 (+)	NCBI

RefSeq Acc Id:

XM_063608732 ⟹ XP_063464802

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	3,038,281 - 3,383,506 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003808033	(Get FASTA)	NCBI Sequence Viewer
	XP_008958331	(Get FASTA)	NCBI Sequence Viewer
	XP_034806056	(Get FASTA)	NCBI Sequence Viewer
	XP_034806063	(Get FASTA)	NCBI Sequence Viewer
	XP_057154952	(Get FASTA)	NCBI Sequence Viewer
	XP_057154974	(Get FASTA)	NCBI Sequence Viewer
	XP_057154979	(Get FASTA)	NCBI Sequence Viewer
	XP_063464802	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000028999
	ENSPPAP00000028999.1
	ENSPPAP00000029006.1

RefSeq Acc Id:

XP_008958331 ⟸ XM_008960083

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ
CRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD
LESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQE
VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQ
YCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL
PDINIYQLKVLDCAMDACINLGLLEEALFYATRTMEPYRLLIL

hide sequence

RefSeq Acc Id:	XP_003808033 ⟸ XM_003807985
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BH65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ CRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD LESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQE VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQ YCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL PDINIYQLKVLDCAMDACINLGLLEEALFYATRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQG MFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS hide sequence

RefSeq Acc Id:	XP_034806056 ⟸ XM_034950165
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_034806063 ⟸ XM_034950172
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSPPAP00000029006 ⟸ ENSPPAT00000051854

RefSeq Acc Id:

ENSPPAP00000028999 ⟸ ENSPPAT00000051847

RefSeq Acc Id:	XP_057154952 ⟸ XM_057298969
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_057154974 ⟸ XM_057298991
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_057154979 ⟸ XM_057298996
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063464802 ⟸ XM_063608732
- Peptide Label:	isoform X4

Protein Domains

MYND-type SET

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037519	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000051847.1	UniProtKB/TrEMBL
	ENSPPAT00000051854.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.220.160	UniProtKB/TrEMBL
	1.25.40.10	UniProtKB/TrEMBL
	1.25.40.970	UniProtKB/TrEMBL
	2.170.270.10	UniProtKB/TrEMBL
	6.10.140.2220	UniProtKB/TrEMBL
InterPro	Hist-Lys_N-MeTrfase_Smyd3	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	SMYD3_SET	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	Znf_MYND	UniProtKB/TrEMBL
KEGG Report	pps:100990317	UniProtKB/TrEMBL
NCBI Gene	SMYD3	ENTREZGENE
PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD	UniProtKB/TrEMBL
	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3	UniProtKB/TrEMBL
Pfam	SET	UniProtKB/TrEMBL
	zf-MYND	UniProtKB/TrEMBL
PROSITE	SAM_MT43_2	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
	ZF_MYND_1	UniProtKB/TrEMBL
	ZF_MYND_2	UniProtKB/TrEMBL
SMART	SET	UniProtKB/TrEMBL
Superfamily-SCOP	SSF82199	UniProtKB/TrEMBL
UniProt	A0A2R9BH65	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BQW6_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations