Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:chondrocyte differentiation involved in endochondral bone morphogenesis
go back to main search page
Accession:GO:0003413 term browser browse the term
Definition:The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the development of a bone. A chondrocyte is a polymorphic cell that forms cartilage.


show annotations for term's descendants           Sort by:
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within IMP (PMID:19623616) MGI PMID:19623616 NCBI chr11:108,808,687...108,841,609
Ensembl chr11:108,811,175...108,841,609 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:25639508) MGI PMID:25639508 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Scube2 signal peptide, CUB domain, EGF-like 2 acts_upstream_of_or_within IMP (PMID:25639508) MGI PMID:25639508 NCBI chr 7:109,397,897...109,464,886
Ensembl chr 7:109,397,883...109,464,886 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within IMP (PMID:20089971) MGI PMID:20089971 NCBI chr12:101,800,304...101,879,463
Ensembl chr12:101,800,302...101,879,526 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 acts_upstream_of_or_within IMP (PMID:22492985) MGI PMID:22492985 NCBI chr 7:98,994,583...99,002,321
Ensembl chr 7:98,994,583...99,002,446 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral acts_upstream_of_or_within IMP (PMID:21788370) MGI PMID:21788370 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen, type XXVII, alpha 1 acts_upstream_of_or_within IMP (PMID:22206015) MGI PMID:22206015 NCBI chr 4:63,132,246...63,253,228
Ensembl chr 4:63,132,241...63,253,228 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within IMP (PMID:26496357) MGI PMID:26496357 NCBI chr 9:106,156,177...106,227,721
Ensembl chr 9:106,158,260...106,227,720 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IMP (PMID:18638549) MGI PMID:18638549 NCBI chr 2:73,646,853...73,723,094
Ensembl chr 2:73,646,853...73,722,983 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within IMP (PMID:26098911) MGI PMID:26098911 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Nppc natriuretic peptide type C involved_in IMP (MGI:2177134|PMID:11259675) UniProt PMID:11259675 MGI:2177134 NCBI chr 1:86,594,015...86,598,295
Ensembl chr 1:86,594,013...86,598,293 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in IMP (PMID:16680148) MGI PMID:16680148 NCBI chr 2:149,247,242...149,252,217
Ensembl chr 2:149,246,977...149,252,213 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in IMP (MGI:3848572|PMID:19389355) UniProt PMID:19389355 MGI:3848572 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in IMP (MGI:5317468|PMID:22421045) UniProt PMID:22421045 MGI:5317468 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:21420963) MGI PMID:21420963 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1, cartilage matrix protein acts_upstream_of_or_within IMP (PMID:16877353) MGI PMID:16877353 NCBI chr 4:130,671,696...130,682,787
Ensembl chr 4:130,671,696...130,682,786 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28576
    cellular process 17548
      cellular developmental process 5064
        cell differentiation 5063
          chondrocyte differentiation 129
            chondrocyte differentiation involved in endochondral bone morphogenesis 16
              chondrocyte development involved in endochondral bone morphogenesis + 9
              growth plate cartilage chondrocyte differentiation + 10
              regulation of chondrocyte differentiation involved in endochondral bone morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 28576
    developmental process 7377
      anatomical structure development 6849
        multicellular organism development 5442
          system development 4671
            skeletal system development 591
              bone development 259
                bone morphogenesis 117
                  endochondral bone morphogenesis 71
                    cartilage development involved in endochondral bone morphogenesis 42
                      chondrocyte differentiation involved in endochondral bone morphogenesis 16
                        chondrocyte development involved in endochondral bone morphogenesis + 9
                        growth plate cartilage chondrocyte differentiation + 10
                        regulation of chondrocyte differentiation involved in endochondral bone morphogenesis + 0
paths to the root