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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleotide-excision repair complex
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Accession:GO:0000109 term browser browse the term
Definition:Any complex formed of proteins that act in nucleotide-excision repair.
Comment:Note that process information is included in the term and definition for the purpose of describing and distinguishing the complex.
Synonyms:narrow_synonym: UvrB-UvrC complex;   UvrBC complex


show annotations for term's descendants           Sort by:
nucleotide-excision repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of ISO (PMID:3290851), (PMID:7559382), (PMID:8197175) RGD PMID:3290851 PMID:7559382 PMID:8197175 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit part_of ISO (PMID:10644440) RGD PMID:10644440 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease part_of ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit part_of ISO
IBA		 (PMID:12732143)
GO_REF:0000033		 RGD
GO_Central		 PMID:12732143 GO_REF:0000033 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit part_of ISO
IEA		 (PMID:20713449)
GO_REF:0000107		 RGD
Ensembl		 PMID:20713449 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
ERCC4-ERCC1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of
located_in		 ISO
IBA		 (PMID:14690602), (PMID:17055345)
GO_REF:0000033
(PMID:16076955)		 RGD
GO_Central		 PMID:14690602 PMID:16076955 PMID:17055345 GO_REF:0000033 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit located_in
part_of		 ISO (PMID:16076955)
(PMID:14690602), (PMID:17055345), (PMID:32034146)		 RGD PMID:14690602 PMID:16076955 PMID:17055345 PMID:32034146 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit located_in ISO (PMID:19595721), (PMID:19596235), (PMID:19596236) RGD PMID:19595721 PMID:19596235 PMID:19596236 NCBI chr10:11,526,623...11,549,313
Ensembl chr10:11,528,424...11,549,295 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 part_of ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808 		JBrowse link
nucleotide-excision repair factor 1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of ISO
IBA		 (PMID:10413517)
GO_REF:0000033		 RGD
GO_Central		 PMID:10413517 GO_REF:0000033 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit part_of ISO
IBA		 (PMID:10413517)
GO_REF:0000033		 RGD
GO_Central		 PMID:10413517 GO_REF:0000033 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726 		JBrowse link
nucleotide-excision repair factor 2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
nucleotide-excision repair factor 3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
XPC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cetn2 centrin 2 part_of ISO (PMID:11279143) RGD PMID:11279143 NCBI chr  X:150,769,944...150,774,833
Ensembl chr  X:150,769,953...150,774,919 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein part_of ISS
ISO		 GO_REF:0000024
(PMID:11279143)		 UniProt
RGD		 PMID:11279143 GO_REF:0000024 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of ISO
IBA		 (PMID:11279143), (PMID:31527837)
GO_REF:0000033		 RGD
GO_Central		 PMID:11279143 PMID:31527837 GO_REF:0000033 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20629
    protein-containing complex 6604
      nuclear protein-containing complex 1276
        nucleotide-excision repair complex 13
          Ddb1-Ckn1 complex 0
          Ddb1-Wdr21 complex 0
          ERCC4-ERCC1 complex 5
          RAD52-ERCC4-ERCC1 complex 0
          XPC complex 3
          nucleotide-excision repair factor 1 complex 3
          nucleotide-excision repair factor 2 complex 1
          nucleotide-excision repair factor 3 complex + 1
          nucleotide-excision repair factor 4 complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20391
      organelle 13803
        membrane-bounded organelle 12398
          intracellular membrane-bounded organelle 11846
            nucleus 7395
              nuclear protein-containing complex 1276
                nucleotide-excision repair complex 13
                  Ddb1-Ckn1 complex 0
                  Ddb1-Wdr21 complex 0
                  ERCC4-ERCC1 complex 5
                  RAD52-ERCC4-ERCC1 complex 0
                  XPC complex 3
                  nucleotide-excision repair factor 1 complex 3
                  nucleotide-excision repair factor 2 complex 1
                  nucleotide-excision repair factor 3 complex + 1
                  nucleotide-excision repair factor 4 complex 0
paths to the root