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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-excision repair complex
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Accession:GO:0000109 term browser browse the term
Definition:Any complex formed of proteins that act in nucleotide-excision repair.
Comment:Note that process information is included in the term and definition for the purpose of describing and distinguishing the complex.
Synonyms:narrow_synonym: UvrB-UvrC complex;   UvrBC complex


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nucleotide-excision repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:3290851), (PMID:7559382), (PMID:8197175) RGD PMID:3290851, PMID:7559382, PMID:8197175 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10644440) RGD PMID:10644440 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 9:50,928,847...50,970,962
Ensembl chr 9:50,925,619...50,970,955
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO
IBA
(PMID:12732143)
PMID:21873635
RGD PMID:12732143, PMID:21873635 RGD:13792537 NCBI chr 2:39,434,617...39,473,392
Ensembl chr 2:39,434,634...39,472,017
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO (PMID:20713449) RGD PMID:20713449 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link
ERCC4-ERCC1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO
IBA
(PMID:14690602), (PMID:17055345)
PMID:21873635
RGD PMID:14690602, PMID:17055345, PMID:21873635 RGD:13792537 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:14690602), (PMID:17055345) RGD PMID:14690602, PMID:17055345 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit colocalizes_with ISO (PMID:19595721), (PMID:19596235), (PMID:19596236) RGD PMID:19595721, PMID:19596235, PMID:19596236 NCBI chr10:11,787,756...11,808,326
Ensembl chr10:11,786,121...11,807,928
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (MGI:MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:MGI:3758502 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 ISO (MGI:MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:MGI:3758502 NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
JBrowse link
nucleotide-excision repair factor 1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC117889.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:975,697...1,003,352 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO
IBA
(PMID:10413517)
PMID:21873635
RGD PMID:10413517, PMID:21873635 RGD:13792537 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO
IBA
(PMID:10413517)
PMID:21873635
RGD PMID:10413517, PMID:21873635 RGD:13792537 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
nucleotide-excision repair factor 2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link
nucleotide-excision repair factor 3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
XPC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cetn2 centrin 2 ISO (PMID:11279143) RGD PMID:11279143 NCBI chr  X:152,927,852...152,933,095
Ensembl chr  X:152,927,718...152,932,953
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein ISO
ISS
(PMID:11279143)
GO_REF:0000024
RGD
UniProt
PMID:11279143 GO_REF:0000024 NCBI chr 5:72,103,704...72,141,701
Ensembl chr 5:72,103,704...72,141,700
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor IBA
ISO
PMID:21873635
(PMID:11279143), (PMID:31527837)
RGD PMID:11279143, PMID:31527837, PMID:21873635 RGD:13792537 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20610
    protein-containing complex 6105
      DNA repair complex 37
        nucleotide-excision repair complex 14
          Ddb1-Ckn1 complex 0
          Ddb1-Wdr21 complex 0
          ERCC4-ERCC1 complex 5
          RAD52-ERCC4-ERCC1 complex 0
          XPC complex 3
          nucleotide-excision repair factor 1 complex 4
          nucleotide-excision repair factor 2 complex 1
          nucleotide-excision repair factor 3 complex + 1
          nucleotide-excision repair factor 4 complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      organelle 13271
        membrane-bounded organelle 11457
          intracellular membrane-bounded organelle 10714
            nucleus 7188
              nucleotide-excision repair complex 14
                Ddb1-Ckn1 complex 0
                Ddb1-Wdr21 complex 0
                ERCC4-ERCC1 complex 5
                RAD52-ERCC4-ERCC1 complex 0
                XPC complex 3
                nucleotide-excision repair factor 1 complex 4
                nucleotide-excision repair factor 2 complex 1
                nucleotide-excision repair factor 3 complex + 1
                nucleotide-excision repair factor 4 complex 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.