Ppia (peptidylprolyl isomerase A) - Rat Genome Database

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Gene: Ppia (peptidylprolyl isomerase A) Rattus norvegicus
Analyze
Symbol: Ppia
Name: peptidylprolyl isomerase A
RGD ID: 3372
Description: Enables cyclosporin A binding activity. Involved in negative regulation of calcineurin-mediated signaling. Predicted to be located in cytosol; extracellular space; and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Used to study epilepsy. Human ortholog(s) of this gene implicated in cholangiocarcinoma and human immunodeficiency virus infectious disease. Orthologous to human PPIA (peptidylprolyl isomerase A); INTERACTS WITH (R,R,R)-alpha-tocopherol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CYCA; cyclophilin A; cyclosporin A-binding protein; CyP-A; MGC72881; p1B15; p31; peptidyl-prolyl cis-trans isomerase A; peptidylprolyl isomerase A (cyclophilin A); PPIase A; rotamase A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ppia-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,491,223 - 85,496,884 (+)NCBIGRCr8
mRatBN7.21481,279,292 - 81,282,960 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,275,091 - 81,299,601 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,680,216 - 85,683,897 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,920,016 - 86,923,697 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,369,616 - 83,373,297 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,673,775 - 86,677,443 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,673,775 - 86,677,443 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,306,923 - 80,310,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,165,998 - 87,169,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11487,185,142 - 87,189,140 (+)NCBI
Celera1480,161,152 - 80,164,810 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
PpiaRataggressive periodontitis  ISOPPIA (Homo sapiens)150429628protein:increased expression:gingiva (human)RGD 
PpiaRatatopic dermatitis  ISOPPIA (Homo sapiens)9068941mRNA:increased expression:zone of skin (human)RGDPMID:32496587 and REF_RGD_ID:150383342
PpiaRatBell's palsy exacerbatesISOPPIA (Homo sapiens)150429625protein:increased expression:blood serum (human)RGD 
PpiaRatcholangiocarcinoma amelioratesISOPPIA (Homo sapiens)150429623human cell line and construct in a mouse modelRGD 
PpiaRatepilepsy  IDA 4890972 RGD 
PpiaRathepatitis C amelioratesISOPpia (Mus musculus)150429630 RGD 
PpiaRathuman immunodeficiency virus infectious disease disease_progressionISOPPIA (Homo sapiens)150383341DNA:SNPs:promotor more ...RGD 
PpiaRathypertension  ISOPPIA (Homo sapiens)9068941mRNA:increased expression:alveolar system (human)RGDPMID:32496587 and REF_RGD_ID:150383342
PpiaRatinfluenza A amelioratesISOPPIA (Homo sapiens)150429624human gene in a mouse modelRGD 
PpiaRatnasopharynx carcinoma  ISOPPIA (Homo sapiens)150429622mRNA more ...RGD 
PpiaRatobesity  ISOPPIA (Homo sapiens)9068941mRNA:increased expression:blood (human)RGDPMID:32496587 and REF_RGD_ID:150383342
PpiaRatprion disease exacerbatesISOPpia (Mus musculus)150383343 RGD 
PpiaRatRespirovirus Infections exacerbatesISOPpia (Mus musculus)150429629 RGD 
PpiaRatSepsis treatmentISOPpia (Mus musculus)150429626 RGD 
PpiaRatViral Myocarditis amelioratesISOPpia (Mus musculus)150429627associated with Coxsackievirus InfectionsRGD 
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Original Reference(s)
PpiaRatpleomorphic xanthoastrocytoma  ISOPPIA (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
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Original Reference(s)
PpiaRatlung non-small cell carcinoma  ISOPPIA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17094902
PpiaRatMouth Neoplasms  ISOPPIA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15274141
PpiaRatNeoplasm Metastasis  ISOPPIA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21956400
PpiaRatsquamous cell carcinoma  ISOPPIA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15274141
PpiaRatStomach Neoplasms  ISOPPIA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19424620

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Original Reference(s)
PpiaRat(+)-catechin multiple interactionsISOPPIA (Homo sapiens)6480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in decreased expression of PPIA mRNACTDPMID:24763279
PpiaRat(1->4)-beta-D-glucan multiple interactionsISOPpia (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PPIA mRNACTDPMID:36331819
PpiaRat(R,R,R)-alpha-tocopherol increases expressionEXP 6480464alpha-Tocopherol results in increased expression of PPIA mRNACTDPMID:16908007
PpiaRat1,2-dimethylhydrazine multiple interactionsISOPpia (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of PPIA mRNACTDPMID:22206623
PpiaRat17beta-estradiol multiple interactionsISOPPIA (Homo sapiens)6480464[Estradiol co-treated with Bucladesine co-treated with Medroxyprogesterone Acetate] results in decreased expression of PPIA mRNACTDPMID:20823114
PpiaRat17beta-estradiol decreases expressionISOPpia (Mus musculus)6480464Estradiol results in decreased expression of PPIA mRNACTDPMID:39298647
PpiaRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of PPIA mRNACTDPMID:32145629
PpiaRat1H-pyrazole increases expressionISOPpia (Mus musculus)6480464pyrazole results in increased expression of PPIA mRNACTDPMID:17945193
PpiaRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOPpia (Mus musculus)64804642 more ...CTDPMID:30294300
PpiaRat2,2,2-tetramine multiple interactionsISOPpia (Mus musculus)6480464Trientine inhibits the reaction [Copper results in decreased secretion of PPIA protein]CTDPMID:19635393
PpiaRat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOPpia (Mus musculus)64804642 more ...CTDPMID:31388691
PpiaRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPpia (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PPIA mRNACTDPMID:21570461
PpiaRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PPIA mRNACTDPMID:32109520
PpiaRat2,3,7,8-Tetrachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:32109520
PpiaRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionEXP 64804642 more ...CTDPMID:19954255
PpiaRat2,4-dibromophenyl 2,4,5-tribromophenyl ether decreases expressionEXP 64804642 more ...CTDPMID:19954255
PpiaRat2,6-dimethoxyphenol multiple interactionsISOPPIA (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of and affects the localization of PPIA proteinCTDPMID:38598786
PpiaRat2-amino-2-deoxy-D-galactopyranose decreases expressionEXP 6480464Galactosamine results in decreased expression of CYCA mRNACTDPMID:22563491
PpiaRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOPPIA (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of PPIA mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of PPIA mRNACTDPMID:28628672
PpiaRat4,4'-sulfonyldiphenol increases expressionISOPpia (Mus musculus)6480464bisphenol S results in increased expression of PPIA mRNACTDPMID:39298647

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Biological Process
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Original Reference(s)
PpiaRatactivation of protein kinase B activity involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatactivation of protein kinase B activity involved_inISOPPIA (Homo sapiens)1624291 PMID:23180369RGDPMID:23180369
PpiaRatapoptotic process involved_inISOPPIA (Homo sapiens)1624291 PMID:15130913 and PMID:31063815RGDPMID:15130913 and PMID:31063815
PpiaRatapoptotic process involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatcell adhesion molecule production involved_inISOPPIA (Homo sapiens)1624291 PMID:15130913RGDPMID:15130913
PpiaRatcell adhesion molecule production involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatcellular response to oxidative stress involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatcellular response to oxidative stress involved_inISOPPIA (Homo sapiens)1624291 PMID:16527992RGDPMID:16527992
PpiaRatendothelial cell activation involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatendothelial cell activation involved_inISOPPIA (Homo sapiens)1624291 PMID:15130913RGDPMID:15130913
PpiaRatleukocyte chemotaxis involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatleukocyte chemotaxis involved_inISOPPIA (Homo sapiens)1624291 PMID:21245143RGDPMID:21245143
PpiaRatlipid droplet organization involved_inISOPPIA (Homo sapiens)1624291 PMID:21711559RGDPMID:21711559
PpiaRatnegative regulation of calcineurin-mediated signaling  IDA 7247324 RGD 
PpiaRatnegative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatnegative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway involved_inISOPPIA (Homo sapiens)1624291 PMID:26095851RGDPMID:26095851
PpiaRatnegative regulation of protein K48-linked ubiquitination involved_inISOPPIA (Homo sapiens)1624291 PMID:30328013RGDPMID:30328013
PpiaRatnegative regulation of protein K48-linked ubiquitination involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatnegative regulation of protein kinase activity involved_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
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Original Reference(s)
PpiaRatcytoplasm located_inISOPPIA (Homo sapiens)1624291 PMID:26095851RGDPMID:26095851
PpiaRatcytoplasm is_active_inIBAFB:FBgn0002936 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PpiaRatcytoplasm located_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
PpiaRatcytosol located_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatextracellular region located_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
PpiaRatextracellular region located_inISOPPIA (Homo sapiens)1624291 PMID:16527992RGDPMID:16527992
PpiaRatextracellular space located_inISOPpia (Mus musculus)1624291 PMID:29921611RGDPMID:29921611
PpiaRatnucleus located_inISOPPIA (Homo sapiens)1624291 PMID:25678563RGDPMID:25678563
PpiaRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatnucleus located_inISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
PpiaRatprotein-containing complex part_ofISOPPIA (Homo sapiens)1624291 PMID:12218175RGDPMID:12218175
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Molecular Function
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Original Reference(s)
PpiaRatcyclosporin A binding  IDA 7247324 RGD 
PpiaRatcyclosporin A binding enablesIBAFB:FBgn0002936 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PpiaRatheparan sulfate binding enablesISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatheparan sulfate binding enablesISOPPIA (Homo sapiens)1624291 PMID:11943775RGDPMID:11943775
PpiaRatintegrin binding enablesISSUniProtKB:P177421600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatintegrin binding enablesISOPpia (Mus musculus)1624291 PMID:24429998RGDPMID:24429998
PpiaRatisomerase activity enablesIEAUniProtKB-KW:KW-04131600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAUniRule:UR0002487901600115GO_REF:0000104UniProtGO_REF:0000104
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAInterPro:IPR002130 more ...1600115GO_REF:0000002InterProGO_REF:0000002
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAInterPro:IPR002130 and InterPro:IPR0208921600115GO_REF:0000002InterProGO_REF:0000002
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAInterPro:IPR0021301600115GO_REF:0000002InterProGO_REF:0000002
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIBACGD:CAL0000183095 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesISOPpia (Mus musculus)1624291 PMID:24429998RGDPMID:24429998
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAUniProtKB-KW:KW-06971600115GO_REF:0000043UniProtGO_REF:0000043
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEARHEA:162371600115GO_REF:0000116RHEAGO_REF:0000116
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAEC:5.2.1.81600115GO_REF:0000003UniProtGO_REF:0000003
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesISSUniProtKB:P629371600115GO_REF:0000024UniProtGO_REF:0000024
PpiaRatpeptidyl-prolyl cis-trans isomerase activity enablesISOPPIA (Homo sapiens)1624291 PMID:14993672 more ...RGDPMID:14993672 more ...
PpiaRatprotein binding enablesISOPPIA (Homo sapiens) and UniProtKB:P62937-21624291UniProtKB:O15535 more ...RGDPMID:32814053
PpiaRatprotein binding enablesISOPPIA (Homo sapiens)1624291UniProtKB:O00267 more ...RGDPMID:11353871 more ...
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#
Reference Title
Reference Citation
1. Regulatory polymorphisms in the cyclophilin A gene, PPIA, accelerate progression to AIDS. An P, etal., PLoS Pathog. 2007 Jun;3(6):e88. doi: 10.1371/journal.ppat.0030088.
2. Cyclophillin A deficiency accelerates RML-induced prion disease. Bouybayoune I, etal., Neurobiol Dis. 2019 Oct;130:104498. doi: 10.1016/j.nbd.2019.104498. Epub 2019 Jun 8.
3. p1B15: a cDNA clone of the rat mRNA encoding cyclophilin. Danielson PE, etal., DNA 1988 May;7(4):261-7.
4. Concentrations of Serum Cyclophilin A in Patients With Bell Palsy. Demir B, etal., J Craniofac Surg. 2020 Jun;31(4):e368-e370. doi: 10.1097/SCS.0000000000006308.
5. Completion of the entire hepatitis C virus life cycle in genetically humanized mice. Dorner M, etal., Nature. 2013 Sep 12;501(7466):237-41. doi: 10.1038/nature12427. Epub 2013 Jul 31.
6. Evaluation of gingival crevicular fluid cyclophilin a and extracellular matrix metalloproteinase inducer levels in different periodontal diseases. Eren G, etal., Arch Oral Biol. 2016 Aug;68:162-6. doi: 10.1016/j.archoralbio.2016.05.004. Epub 2016 May 4.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Clonorchis sinensis cyclophilin A immunization protected mice from CLP-induced sepsis. Jiang J, etal., Int Immunopharmacol. 2018 Jun;59:347-353. doi: 10.1016/j.intimp.2018.03.039. Epub 2018 Apr 19.
9. Cyclophilin A protects mice against infection by influenza A virus. Li J, etal., Sci Rep. 2016 Jun 29;6:28978. doi: 10.1038/srep28978.
10. Exosomal cyclophilin A as a novel noninvasive biomarker for Epstein-Barr virus associated nasopharyngeal carcinoma. Liu L, etal., Cancer Med. 2019 Jun;8(6):3142-3151. doi: 10.1002/cam4.2185. Epub 2019 May 7.
11. Cyclophilin A-regulated ubiquitination is critical for RIG-I-mediated antiviral immune responses. Liu W, etal., Elife. 2017 Jun 8;6. doi: 10.7554/eLife.24425.
12. Uncaria rhynchophylla upregulates the expression of MIF and cyclophilin A in kainic acid-induced epilepsy rats: A proteomic analysis. Lo WY, etal., Am J Chin Med. 2010;38(4):745-59.
13. Mitochondrial targeting of cyclosporin A enables selective inhibition of cyclophilin-D and enhanced cytoprotection after glucose and oxygen deprivation. Malouitre S, etal., Biochem J. 2009 Dec 14;425(1):137-48. doi: 10.1042/BJ20090332.
14. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
15. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
16. Cyclophilin A enhances cell proliferation and tumor growth of liver fluke-associated cholangiocarcinoma. Obchoei S, etal., Mol Cancer. 2011 Aug 26;10:102. doi: 10.1186/1476-4598-10-102.
17. GOA pipeline RGD automated data pipeline
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Cyclophilin A affects inflammation, virus elimination and myocardial fibrosis in coxsackievirus B3-induced myocarditis. Seizer P, etal., J Mol Cell Cardiol. 2012 Jul;53(1):6-14. doi: 10.1016/j.yjmcc.2012.03.004. Epub 2012 Mar 15.
20. P31, a mammalian housekeeping protein encoded by a multigene family containing a high proportion of pseudogenes. Theodor L, etal., Biochim Biophys Acta 1985 Nov 13;826(2-3):137-46.
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PMID:1599421   PMID:1851525   PMID:11250896   PMID:12218175   PMID:12357034   PMID:12477932   PMID:14993672   PMID:15489334   PMID:16352598   PMID:16502470   PMID:16780588   PMID:17634366  
PMID:19056867   PMID:19190083   PMID:19199708   PMID:19932913   PMID:19946888   PMID:19968957   PMID:20458337   PMID:20676357   PMID:21330604   PMID:21423176   PMID:21711559   PMID:22139963  
PMID:22658674   PMID:22681889   PMID:22871113   PMID:23106098   PMID:23376485   PMID:23533145   PMID:23846495   PMID:24006456   PMID:24434144   PMID:26173747   PMID:27825172   PMID:29476059  
PMID:29914983   PMID:30221707   PMID:31686426   PMID:32357304   PMID:37993081  



Ppia
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,491,223 - 85,496,884 (+)NCBIGRCr8
mRatBN7.21481,279,292 - 81,282,960 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,275,091 - 81,299,601 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,680,216 - 85,683,897 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,920,016 - 86,923,697 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,369,616 - 83,373,297 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,673,775 - 86,677,443 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,673,775 - 86,677,443 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,306,923 - 80,310,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,165,998 - 87,169,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11487,185,142 - 87,189,140 (+)NCBI
Celera1480,161,152 - 80,164,810 (+)NCBICelera
Cytogenetic Map14q21NCBI
PPIA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,796,681 - 44,803,117 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,796,680 - 44,824,564 (+)EnsemblGRCh38hg38GRCh38
GRCh37744,836,280 - 44,842,716 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,802,766 - 44,809,241 (+)NCBINCBI36Build 36hg18NCBI36
Build 34744,609,504 - 44,615,343NCBI
Celera744,935,095 - 44,941,571 (+)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,721,292 - 44,727,768 (+)NCBIHuRef
CHM1_1744,840,586 - 44,847,069 (+)NCBICHM1_1
T2T-CHM13v2.0744,957,232 - 44,963,670 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,875,748 - 44,882,224 (+)NCBI
Ppia
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,365,867 - 6,369,817 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,365,443 - 6,369,817 (+)EnsemblGRCm39 Ensembl
GRCm38116,415,867 - 6,419,817 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,415,443 - 6,419,817 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,315,873 - 6,319,813 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,315,873 - 6,319,813 (+)NCBIMGSCv36mm8
Celera116,899,520 - 6,903,460 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.97NCBI
Ppia
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554567,381,923 - 7,383,203 (-)NCBIChiLan1.0ChiLan1.0
PPIA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,708,848 - 49,714,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,034,551 - 98,039,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,510,450 - 45,515,448 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,578,764 - 45,583,516 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,578,765 - 45,605,545 (+)Ensemblpanpan1.1panPan2
LOC403581
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1780,937,433 - 80,938,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0781,027,063 - 81,027,805 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1780,741,873 - 80,742,615 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01764,379,529 - 64,380,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0781,058,591 - 81,059,333 (-)NCBIUU_Cfam_GSD_1.0
Ppia
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,457,966 - 100,461,621 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,669,506 - 19,673,398 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,669,727 - 19,673,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPIA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11850,563,130 - 50,566,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,286,994 - 55,290,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPIA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,876,099 - 13,883,546 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,876,099 - 13,883,462 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,652,515 - 8,658,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppia
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,447,554 - 7,450,641 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,447,554 - 7,450,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Ppia
11 total Variants

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:22
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000009179
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat

1 to 10 of 23 rows
UniSTS:265677  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21421,006,765 - 21,007,058 (+)MAPPERmRatBN7.2
mRatBN7.2441,829,100 - 41,829,392 (+)MAPPERmRatBN7.2
Rnor_6.01422,707,130 - 22,707,422NCBIRnor6.0
Rnor_5.01422,609,939 - 22,610,231UniSTSRnor5.0
RGSC_v3.41422,613,076 - 22,613,368UniSTSRGSC3.4
Cytogenetic Map14q21UniSTS
Ppia  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21421,006,634 - 21,006,784 (+)MAPPERmRatBN7.2
Rnor_6.01422,706,999 - 22,707,148NCBIRnor6.0
Rnor_5.01422,609,808 - 22,609,957UniSTSRnor5.0
Cytogenetic Map14q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 22 86 164 114 120 82 38 82 320 146 148 70 82 38


1 to 23 of 23 rows
RefSeq Transcripts NM_017101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M19533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M25637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 23 of 23 rows

Ensembl Acc Id: ENSRNOT00000038275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,278,349 - 81,282,951 (+)Ensembl
Rnor_6.0 Ensembl1486,675,818 - 86,677,438 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079015   ⟹   ENSRNOP00000071920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,278,928 - 81,299,601 (+)Ensembl
Rnor_6.0 Ensembl1486,673,817 - 86,677,237 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091873   ⟹   ENSRNOP00000073930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,275,091 - 81,282,954 (+)Ensembl
Rnor_6.0 Ensembl1486,673,775 - 86,677,443 (+)Ensembl
RefSeq Acc Id: NM_017101   ⟹   NP_058797
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,493,216 - 85,496,884 (+)NCBI
mRatBN7.21481,279,292 - 81,282,960 (+)NCBI
Rnor_6.01486,673,775 - 86,677,443 (+)NCBI
Rnor_5.01480,306,923 - 80,310,652 (+)NCBI
RGSC_v3.41487,165,998 - 87,169,995 (+)RGD
Celera1480,161,152 - 80,164,810 (+)RGD
Sequence:
RefSeq Acc Id: XM_017599085   ⟹   XP_017454574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,491,223 - 85,495,360 (+)NCBI
mRatBN7.21481,279,733 - 81,282,959 (+)NCBI
Rnor_6.01486,674,258 - 86,677,443 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_058797 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454574 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41009 (Get FASTA)   NCBI Sequence Viewer  
  AAB59719 (Get FASTA)   NCBI Sequence Viewer  
  AAH59141 (Get FASTA)   NCBI Sequence Viewer  
  AAH91153 (Get FASTA)   NCBI Sequence Viewer  
  EDM00354 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089529.1
GenBank Protein P10111 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_058797   ⟸   NM_017101
- UniProtKB: P18303 (UniProtKB/Swiss-Prot),   Q5BK98 (UniProtKB/Swiss-Prot),   P10111 (UniProtKB/Swiss-Prot),   A6IKU0 (UniProtKB/TrEMBL),   A6IKT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454574   ⟸   XM_017599085
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000071920   ⟸   ENSRNOT00000079015
Ensembl Acc Id: ENSRNOP00000073930   ⟸   ENSRNOT00000091873
PPIase cyclophilin-type

Name Modeler Protein Id AA Range Protein Structure
AF-P10111-F1-model_v2 AlphaFold P10111 1-164 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699474
Promoter ID:EPDNEW_R9998
Type:multiple initiation site
Name:Ppia_1
Description:peptidylprolyl isomerase A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01486,673,774 - 86,673,834EPDNEW


1 to 38 of 38 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-15091 BioCyc
Ensembl Genes ENSRNOG00000027864 Ensembl
  ENSRNOG00000068764 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000106407.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.100.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919594 IMAGE-MGC_LOAD
  IMAGE:7308693 IMAGE-MGC_LOAD
InterPro Cyclophilin-like_dom_sf UniProtKB/Swiss-Prot
  Cyclophilin-type_PPIase UniProtKB/Swiss-Prot
  Cyclophilin-type_PPIase_CS UniProtKB/Swiss-Prot
  Cyclophilin-type_PPIase_dom UniProtKB/Swiss-Prot
KEGG Report rno:100360977 UniProtKB/Swiss-Prot
  rno:25518 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108714 IMAGE-MGC_LOAD
  MGC:72881 IMAGE-MGC_LOAD
NCBI Gene 25518 ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE UniProtKB/Swiss-Prot
  PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A UniProtKB/Swiss-Prot
Pfam Pro_isomerase UniProtKB/Swiss-Prot
PhenoGen Ppia PhenoGen
PIRSF Peptidylpro_ismrse UniProtKB/Swiss-Prot
PRINTS CSAPPISMRASE UniProtKB/Swiss-Prot
PROSITE CSA_PPIASE_1 UniProtKB/Swiss-Prot
  CSA_PPIASE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000027864 RatGTEx
  ENSRNOG00000068764 RatGTEx
Superfamily-SCOP SSF50891 UniProtKB/Swiss-Prot
UniProt A0A0G2K1P0_RAT UniProtKB/TrEMBL
  A0A8I5ZPK0_RAT UniProtKB/TrEMBL
  A0A8L2R8V9_RAT UniProtKB/TrEMBL
  A6IKT9 ENTREZGENE, UniProtKB/TrEMBL
  A6IKU0 ENTREZGENE, UniProtKB/TrEMBL
  P10111 ENTREZGENE
  P18303 ENTREZGENE
  PPIA_RAT UniProtKB/Swiss-Prot
  Q5BK98 ENTREZGENE
UniProt Secondary P18303 UniProtKB/Swiss-Prot
  Q5BK98 UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-21 Ppia  peptidylprolyl isomerase A  Ppia  peptidylprolyl isomerase A (cyclophilin A)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Ppia  peptidylprolyl isomerase A (cyclophilin A)  Ppia  peptidylprolyl isomerase A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Ppia  Peptidylprolyl isomerase A (cyclophilin A)      Symbol and Name status set to approved 70586 APPROVED