Symbol:
LOC403581
Name:
peptidylprolyl isomerase A (cyclophilin A) pseudogene
RGD ID:
12156548
Description:
ENCODES a pseudogene that exhibits cyclosporin A binding (ortholog); heparan sulfate binding (ortholog); integrin binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); apoptotic process (ortholog); cell adhesion molecule production (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); atopic dermatitis (ortholog); Bell's palsy (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); extracellular space (ortholog)
Type:
pseudo
RefSeq Status:
VALIDATED
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Related Functional Gene:
PPIA
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 7 80,937,433 - 80,938,175 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 ROS_Cfam_1.0 7 81,027,063 - 81,027,805 (-) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 7 80,741,873 - 80,742,615 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 17 64,379,529 - 64,380,271 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 7 81,058,591 - 81,059,333 (-) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
LOC403581 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 7 80,937,433 - 80,938,175 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 ROS_Cfam_1.0 7 81,027,063 - 81,027,805 (-) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 7 80,741,873 - 80,742,615 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 17 64,379,529 - 64,380,271 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 7 81,058,591 - 81,059,333 (-) NCBI UU_Cfam_GSD_1.0
PPIA Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 44,796,681 - 44,803,117 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 44,796,680 - 44,824,564 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 44,836,280 - 44,842,716 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 7 44,802,766 - 44,809,241 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 7 44,609,504 - 44,615,343 NCBI Celera 7 44,935,095 - 44,941,571 (+) NCBI Celera Cytogenetic Map 7 p13 NCBI HuRef 7 44,721,292 - 44,727,768 (+) NCBI HuRef CHM1_1 7 44,840,586 - 44,847,069 (+) NCBI CHM1_1 T2T-CHM13v2.0 7 44,957,232 - 44,963,670 (+) NCBI T2T-CHM13v2.0 CRA_TCAGchr7v2 7 44,875,748 - 44,882,224 (+) NCBI
Ppia Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 6,365,867 - 6,369,817 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 6,365,443 - 6,369,817 (+) Ensembl GRCm39 Ensembl GRCm38 11 6,415,867 - 6,419,817 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 6,415,443 - 6,419,817 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 6,315,873 - 6,319,813 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 6,315,873 - 6,319,813 (+) NCBI MGSCv36 mm8 Celera 11 6,899,520 - 6,903,460 (+) NCBI Celera Cytogenetic Map 11 A1 NCBI cM Map 11 3.97 NCBI
Ppia Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 14 85,491,223 - 85,496,884 (+) NCBI GRCr8 mRatBN7.2 14 81,279,292 - 81,282,960 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 14 81,275,091 - 81,299,601 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 14 85,680,216 - 85,683,897 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 14 86,920,016 - 86,923,697 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 14 83,369,616 - 83,373,297 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 14 86,673,775 - 86,677,443 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 14 86,673,775 - 86,677,443 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 14 80,306,923 - 80,310,652 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 14 87,165,998 - 87,169,995 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 14 87,185,142 - 87,189,140 (+) NCBI Celera 14 80,161,152 - 80,164,810 (+) NCBI Celera Cytogenetic Map 14 q21 NCBI
Ppia Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955456 7,381,923 - 7,383,203 (-) NCBI ChiLan1.0 ChiLan1.0
PPIA Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 6 49,708,848 - 49,714,864 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 7 98,034,551 - 98,039,602 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 7 45,510,450 - 45,515,448 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 7 45,578,764 - 45,583,516 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 7 45,578,765 - 45,605,545 (+) Ensembl panpan1.1 panPan2
Ppia Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 100,457,966 - 100,461,621 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936478 19,669,506 - 19,673,398 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936478 19,669,727 - 19,673,355 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
PPIA
PPIA Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 21 13,876,099 - 13,883,546 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 21 13,876,099 - 13,883,462 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666062 8,652,515 - 8,658,073 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Ppia
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
RefSeq Acc Id:
NR_036670
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 7 80,937,433 - 80,938,175 (-) NCBI ROS_Cfam_1.0 7 81,027,063 - 81,027,805 (-) NCBI UMICH_Zoey_3.1 7 80,741,873 - 80,742,615 (-) NCBI UNSW_CanFamBas_1.0 17 64,379,529 - 64,380,271 (-) NCBI UU_Cfam_GSD_1.0 7 81,058,591 - 81,059,333 (-) NCBI
Sequence:
AGACGCCGCCGCCCCGGAGTAGCCGTCGCCGTCCAGCCATGGTCAACCCCACCGTGTTCTTTGACATCGCCGTGGACCGCGAGCCTTTGGGCCGCGTCTCTTTCGAGCTGTTTGCAGACAAAGTTCCA
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RefSeq Acc Id:
NR_036671
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 7 80,937,433 - 80,938,174 (-) NCBI ROS_Cfam_1.0 7 81,027,063 - 81,027,804 (-) NCBI UMICH_Zoey_3.1 7 80,741,873 - 80,742,614 (-) NCBI UNSW_CanFamBas_1.0 17 64,379,529 - 64,380,270 (-) NCBI UU_Cfam_GSD_1.0 7 81,058,591 - 81,059,332 (-) NCBI
Sequence:
GACGCCGCCGCCCCGGAGTAGCCGTCGCCGTCCAGCCATGGTCAACCCCACCGTGTTCTTTGACATCGCCGTGGACCGCGAGCCTTTGGGCCGCGTCTCTTTCGAGCTAACTTTCGTGCTCTGAGTAC
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RefSeq Acc Id:
NR_036672
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 7 80,937,433 - 80,938,160 (-) NCBI ROS_Cfam_1.0 7 81,027,063 - 81,027,790 (-) NCBI UMICH_Zoey_3.1 7 80,741,873 - 80,742,600 (-) NCBI UNSW_CanFamBas_1.0 17 64,379,529 - 64,380,256 (-) NCBI UU_Cfam_GSD_1.0 7 81,058,591 - 81,059,318 (-) NCBI
Sequence:
GGAGTAGCCGTCGCCGTCCAGCCATGGTCAACCCCACCGTGTTCTTTGACATCGCCGTGGACCGCGAGCCTTTGGGCCGCGTCTCTTTCGAGCTGTTTGCAGACAAAGTTCCTGCTTTCACAGGATTA
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