Olfr1330-ps1 (olfactory receptor 1330, pseudogene 1) - Rat Genome Database

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Gene: Olfr1330-ps1 (olfactory receptor 1330, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olfr1330-ps1
Name: olfactory receptor 1330, pseudogene 1
RGD ID: 1584753
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000068591; olfactory receptor 1330; olfactory receptor 2A12-like; Olfr1330; similar to olfactory receptor Olr869
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,611,808 - 137,612,814 (-)NCBIGRCr8
mRatBN7.25132,326,454 - 132,327,460 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,326,454 - 132,327,404 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5132,326,454 - 132,327,404 (-)NCBImRatBN7.2 Ensembl
Rnor_6.05137,616,305 - 137,617,311 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,616,341 - 137,617,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,402,724 - 141,406,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,277,596 - 139,278,602 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,854,826 - 130,855,832 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline


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Variants in Olfr1330-ps1
75 total Variants

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:127
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000071641
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat

1 to 10 of 50 rows



circulatory system
ectoderm
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
2 3 1 2 2 2 1


RefSeq Transcripts XM_017593967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071641   ⟹   ENSRNOP00000066896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,616,341 - 137,617,258 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097040   ⟹   ENSRNOP00000077454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5132,326,454 - 132,327,404 (-)Ensembl
RefSeq Acc Id: XM_017593967   ⟹   XP_017449456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05137,616,305 - 137,617,311 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602939   ⟹   XP_017458428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera5130,854,826 - 130,855,832 (-)NCBI
Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-M0RBG1-F1-model_v2 AlphaFold M0RBG1 1-306 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-40123 BioCyc
Ensembl Genes ENSRNOG00000047815 Ensembl
  ENSRNOG00000068591 Ensembl, ENTREZGENE
NCBI Gene 679789 ENTREZGENE
PhenoGen Olfr1330-ps1 PhenoGen
RatGTEx ENSRNOG00000047815 RatGTEx
  ENSRNOG00000068591 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Olfr1330-ps1  olfactory receptor 1330, pseudogene 1  ENSRNOG00000068591    Data merged from RGD:150343922 737654 PROVISIONAL
2021-08-31 ENSRNOG00000068591        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-06-08 Olfr1330-ps1  olfactory receptor 1330, pseudogene 1  Olfr1330  olfactory receptor 1330  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC679789  similar to olfactory receptor Olr869  LOC686238  similar to olfactory receptor Olr869  Data merged from RGD:1584325 1643240 APPROVED
2006-11-19 LOC679789  similar to olfactory receptor Olr869      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686238  similar to olfactory receptor Olr869      Symbol and Name status set to provisional 70820 PROVISIONAL