SLC26A5 (solute carrier family 26 member 5) - Rat Genome Database

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Gene: SLC26A5 (solute carrier family 26 member 5) Homo sapiens
Analyze
Symbol: SLC26A5
Name: solute carrier family 26 member 5
RGD ID: 1603482
HGNC Page HGNC:9359
Description: Enables protein homodimerization activity. Involved in sensory perception of sound. Located in lateral plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 61.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DFNB61; MGC118886; MGC118887; MGC118888; MGC118889; PRES; prestin; prestin (motor protein); solute carrier family 26 (anion exchanger), member 5; solute carrier family 26, member 5; solute carrier family 26, member 5 (prestin)
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387103,352,730 - 103,446,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7103,352,730 - 103,446,207 (-)EnsemblGRCh38hg38GRCh38
GRCh377102,993,177 - 103,086,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,780,413 - 102,873,834 (-)NCBINCBI36Build 36hg18NCBI36
Celera797,800,386 - 97,892,942 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef797,355,533 - 97,447,053 (-)NCBIHuRef
CHM1_17102,926,169 - 103,019,937 (-)NCBICHM1_1
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
SLC26A5HumanHearing Loss no_associationIAGP 9479051DNA:snp:intron:IVS2-2A>G (human)RGD 
SLC26A5HumanHearing Loss  ISOSlc26a5 (Mus musculus)9479049 RGD 
SLC26A5HumanHearing Loss  IAGP 9479050DNA:snp:intron:IVS2-2A>G (human)RGD 
SLC26A5HumanHearing Loss, Noise-Induced  ISOSlc26a5 (Mus musculus)9585684mRNA and protein:increased expression:cochlea (mouse)RGD 
SLC26A5Humanhypothyroidism  ISOSlc26a5 (Mus musculus)9585687Secondary Hypothyroidism and protein:altered expression:cochlear outer hair cell (mouse)RGD 
SLC26A5Humanhypothyroidism  ISOSlc26a5 (Rattus norvegicus)9585686protein:altered expression:cochlear outer hair cell (rat)RGD 
SLC26A5HumanNonsyndromic Sensorineural Hearing Loss  IAGP 7364803DNA:snp:intron:IVS2-2A>G (human)RGD 
SLC26A5HumanPresbycusis  ISOSlc26a5 (Rattus norvegicus)9585690protein:altered expression:cochlear outer hair cell (rat)RGD 
SLC26A5Humansensorineural hearing loss  ISOSlc26a5 (Mus musculus)9585667mRNA:decreased expression:organ of Corti (mouse)RGD 
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Original Reference(s)
SLC26A5Humanautosomal recessive nonsyndromic deafness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic deafnessClinVar 
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 61ClinVarPMID:25741868
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: SLC26A5-related conditionClinVarPMID:28492532
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 61ClinVarPMID:24164807
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 61ClinVarPMID:12239568 more ...
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 61ClinVarPMID:24033266 more ...
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24033266 more ...
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 61ClinVarPMID:12719379 more ...
SLC26A5Humangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
SLC26A5Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
SLC26A5Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
SLC26A5HumanHearing Loss  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Nonsyndromic Hearing Loss and RecessiveClinVar 
SLC26A5HumanHearing Loss  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:30311386
SLC26A5HumanNorman-Roberts syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Norman-Roberts syndromeClinVarPMID:10973257 more ...
SLC26A5HumanNorman-Roberts syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Norman-Roberts syndromeClinVarPMID:28492532
SLC26A5Humanpleomorphic xanthoastrocytoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
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Original Reference(s)
SLC26A5HumanDeafness  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12719379
SLC26A5HumanHearing Loss  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:34273409
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Original Reference(s)
SLC26A5Humanautosomal recessive nonsyndromic deafness 61  IAGP 7240710 OMIM 

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Original Reference(s)
SLC26A5Human2,3',4,4',5-Pentachlorobiphenyl increases expressionISOSlc26a5 (Mus musculus)64804642 more ...CTDPMID:31388691
SLC26A5Humanacrylamide decreases expressionISOSlc26a5 (Rattus norvegicus)6480464Acrylamide results in decreased expression of SLC26A5 mRNACTDPMID:28959563
SLC26A5Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of SLC26A5 geneCTDPMID:27153756
SLC26A5Humanall-trans-retinoic acid multiple interactionsISOSlc26a5 (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of SLC26A5 mRNACTDPMID:36189433
SLC26A5Humanammonium chloride affects expressionISOSlc26a5 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of SLC26A5 mRNACTDPMID:16483693
SLC26A5Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of SLC26A5 promoterCTDPMID:27901495
SLC26A5Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of SLC26A5 5' UTRCTDPMID:27901495
SLC26A5Humanbisphenol A decreases expressionISOSlc26a5 (Rattus norvegicus)6480464bisphenol A results in decreased expression of SLC26A5 mRNACTDPMID:25181051
SLC26A5Humanbutanal decreases expressionEXP 6480464butyraldehyde results in decreased expression of SLC26A5 mRNACTDPMID:26079696
SLC26A5Humancadmium dichloride increases methylationISOSlc26a5 (Rattus norvegicus)6480464Cadmium Chloride results in increased methylation of SLC26A5 promoterCTDPMID:22457795
SLC26A5Humancadmium dichloride increases expressionEXP 6480464Cadmium Chloride results in increased expression of SLC26A5 mRNACTDPMID:38568856
SLC26A5HumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to SLC26A5 gene]CTDPMID:28238834
SLC26A5Humanethylparaben increases expressionEXP 6480464ethyl-p-hydroxybenzoate results in increased expression of SLC26A5 mRNACTDPMID:37690743
SLC26A5Humanflavonoids decreases expressionISOSlc26a5 (Rattus norvegicus)6480464Flavonoids results in decreased expression of SLC26A5 mRNACTDPMID:18035473
SLC26A5Humangemfibrozil decreases expressionISOSlc26a5 (Rattus norvegicus)6480464Gemfibrozil results in decreased expression of SLC26A5 mRNACTDPMID:20006695
SLC26A5Humanmono(2-ethylhexyl) phthalate multiple interactionsISOSlc26a5 (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of SLC26A5 mRNACTDPMID:36189433
SLC26A5Humanpotassium chloride increases expressionISOSlc26a5 (Rattus norvegicus)6480464Potassium Chloride results in increased expression of SLC26A5 mRNACTDPMID:21624428
SLC26A5Humanpotassium chloride decreases expressionISOSlc26a5 (Rattus norvegicus)6480464Potassium Chloride results in decreased expression of SLC26A5 mRNACTDPMID:21624428
SLC26A5Humansodium arsenite decreases expressionISOSlc26a5 (Mus musculus)6480464sodium arsenite results in decreased expression of SLC26A5 mRNACTDPMID:37682722
SLC26A5Humansodium chloride decreases expressionISOSlc26a5 (Rattus norvegicus)6480464Sodium Chloride results in decreased expression of SLC26A5 mRNACTDPMID:21624428

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Biological Process
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Original Reference(s)
SLC26A5Humanbicarbonate transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanbicarbonate transport involved_inISSUniProtKB:Q9EPH0150520179 UniProtGO_REF:0000024
SLC26A5Humanchloride transmembrane transport  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:11423665 and REF_RGD_ID:9479062
SLC26A5Humanchloride transmembrane transport involved_inIBAPANTHER:PTN000212046 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humanchloride transmembrane transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanchloride transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanchloride transport involved_inISSUniProtKB:Q9EPH0150520179 UniProtGO_REF:0000024
SLC26A5Humancochlea development  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:20006695 and REF_RGD_ID:9479067
SLC26A5Humancochlea development involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanfructose transmembrane transport  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:12938672 and REF_RGD_ID:9585731
SLC26A5Humanfructose transmembrane transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanmonoatomic anion transmembrane transport  ISOSlc26a5 (Rattus norvegicus)9068941SCN-RGDPMID:22063625 and REF_RGD_ID:9479065
SLC26A5Humanmonoatomic anion transmembrane transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanmonoatomic ion transmembrane transport  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:11274441 and REF_RGD_ID:68832
SLC26A5Humanmonoatomic ion transmembrane transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humannegative regulation of monoatomic ion transmembrane transport  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:15660259 and REF_RGD_ID:9586011
SLC26A5Humannegative regulation of monoatomic ion transmembrane transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanoxalate transport involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanpositive regulation of cell motility  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:11274441 and REF_RGD_ID:68832
SLC26A5Humanpositive regulation of cell motility involved_inIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
SLC26A5Humanbasolateral plasma membrane  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:20525072 and REF_RGD_ID:9479076
SLC26A5Humanbasolateral plasma membrane located_inISSUniProtKB:Q9JKQ2150520179 UniProtGO_REF:0000024
SLC26A5Humanbasolateral plasma membrane located_inIEAUniProtKB:Q99NH7 more ...150520179 EnsemblGO_REF:0000107
SLC26A5Humanlateral plasma membrane  ISOSlc26a5 (Rattus norvegicus)9068941 RGDPMID:11867734 and REF_RGD_ID:70328
SLC26A5Humanlateral plasma membrane located_inIDA 150520179 PMID:12584604 and PMID:14553901UniProtPMID:12584604 and PMID:14553901
SLC26A5Humanlateral plasma membrane located_inIEAUniProtKB-SubCell:SL-0153150520179 UniProtGO_REF:0000044
SLC26A5Humanlateral plasma membrane located_inIEAUniProtKB:Q99NH7 more ...150520179 EnsemblGO_REF:0000107
SLC26A5Humanlateral wall of outer hair cell located_inIEAUniProtKB:Q99NH7 and ensembl:ENSMUSP00000030878150520179 EnsemblGO_REF:0000107
SLC26A5Humanmembrane located_inIEAInterPro:IPR001902 and InterPro:IPR011547150520179 InterProGO_REF:0000002
SLC26A5Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLC26A5Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLC26A5Humanplasma membrane is_active_inIBAMGI:1346029 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humanplasma membrane located_inIEAUniProtKB:Q99NH7 and ensembl:ENSMUSP00000030878150520179 EnsemblGO_REF:0000107
SLC26A5Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
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Molecular Function
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Original Reference(s)
SLC26A5Humanbicarbonate transmembrane transporter activity enablesIBAFB:FBgn0036770 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humanchloride transmembrane transporter activity enablesIBAMGI:107181 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humanchloride:bicarbonate antiporter activity enablesIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanchloride:bicarbonate antiporter activity enablesISSUniProtKB:Q9EPH0150520179 UniProtGO_REF:0000024
SLC26A5Humanidentical protein binding  ISOSlc26a5 (Rattus norvegicus)9068941homotetramerizationRGDPMID:17998209 and REF_RGD_ID:9479070
SLC26A5Humanidentical protein binding enablesIEAUniProtKB:Q9EPH0 and ensembl:ENSRNOP00000015733150520179 EnsemblGO_REF:0000107
SLC26A5Humanidentical protein binding  ISOSlc26a5 (Rattus norvegicus)9068941homodimerizationRGDPMID:18073211 and REF_RGD_ID:9479057
SLC26A5Humanoxalate transmembrane transporter activity enablesIBAFB:FBgn0036770 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humanprotein binding enablesIPIUniProtKB:Q9Y385150520179 PMID:32296183IntActPMID:32296183
SLC26A5Humanprotein homodimerization activity enablesIDA 150520179 PMID:34390643UniProtPMID:34390643
SLC26A5Humansecondary active sulfate transmembrane transporter activity enablesIEAInterPro:IPR018045150520179 InterProGO_REF:0000002
SLC26A5Humanspectrin binding enablesIEAUniProtKB:Q99NH7 and ensembl:ENSMUSP00000030878150520179 EnsemblGO_REF:0000107
SLC26A5Humansulfate transmembrane transporter activity enablesIBAFB:FBgn0036770 more ...150520179 GO_CentralGO_REF:0000033
SLC26A5Humantranscription factor binding  ISOZbtb16 (Rattus norvegicus)9068941 RGDPMID:15925207 and REF_RGD_ID:9479055
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Original Reference(s)
SLC26A5HumanHearing impairment  IAGP 7364803DNA:snp:intron:IVS2-2A>GRGD 
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Original Reference(s)
SLC26A5HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:613865
SLC26A5HumanSensorineural hearing impairment  IAGP 8699517 HPOMIM:613865
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Original Reference(s)
SLC26A5HumanHearing impairment  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:30311386
SLC26A5HumanPleomorphic xanthoastrocytoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358

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#
Reference Title
Reference Citation
1. Cochlear function in Prestin knockout mice. Cheatham MA, etal., J Physiol. 2004 Nov 1;560(Pt 3):821-30. Epub 2004 Aug 19.
2. Aging outer hair cells (OHCs) in the Fischer 344 rat cochlea: function and morphology. Chen GD, etal., Hear Res. 2009 Feb;248(1-2):39-47. doi: 10.1016/j.heares.2008.11.010. Epub 2008 Dec 10.
3. An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice. Lewis MA, etal., Nat Genet. 2009 May;41(5):614-8. doi: 10.1038/ng.369. Epub 2009 Apr 12.
4. Prestin, a cochlear motor protein, is defective in non-syndromic hearing loss. Liu XZ, etal., Hum Mol Genet. 2003 May 15;12(10):1155-62.
5. Molecular screening of patients with nonsyndromic hearing loss from Nanjing city of China. Lu Y, etal., J Biomed Res. 2011 Sep;25(5):309-18. doi: 10.1016/S1674-8301(11)60042-0.
6. Deafness and permanently reduced potassium channel gene expression and function in hypothyroid Pit1dw mutants. Mustapha M, etal., J Neurosci. 2009 Jan 28;29(4):1212-23. doi: 10.1523/JNEUROSCI.4957-08.2009.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
11. High frequency of the IVS2-2A>G DNA sequence variation in SLC26A5, encoding the cochlear motor protein prestin, precludes its involvement in hereditary hearing loss. Tang HY, etal., BMC Med Genet. 2005 Aug 8;6:30.
12. Thyroid hormone receptor alpha1 is a critical regulator for the expression of ion channels during final differentiation of outer hair cells. Winter H, etal., Histochem Cell Biol. 2007 Jul;128(1):65-75. Epub 2007 May 23.
13. Prestin regulation and function in residual outer hair cells after noise-induced hearing loss. Xia A, etal., PLoS One. 2013 Dec 20;8(12):e82602. doi: 10.1371/journal.pone.0082602. eCollection 2013.
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PMID:9847074   PMID:10821263   PMID:11087667   PMID:11423665   PMID:11581495   PMID:11836512   PMID:11867734   PMID:12239568   PMID:12477932   PMID:12584604   PMID:12853948   PMID:14553901  
PMID:14747354   PMID:15140192   PMID:15660259   PMID:16344560   PMID:16873410   PMID:17151276   PMID:17786286   PMID:17933870   PMID:18073211   PMID:18567583   PMID:18988928   PMID:19027966  
PMID:19492055   PMID:19515900   PMID:19737539   PMID:19926791   PMID:20301607   PMID:20471983   PMID:20668687   PMID:21813750   PMID:21873635   PMID:21975444   PMID:23212912   PMID:23506885  
PMID:23542924   PMID:23660400   PMID:23665419   PMID:23762468   PMID:24138858   PMID:24453323   PMID:24647542   PMID:25920562   PMID:26283790   PMID:26903308   PMID:27041369   PMID:28422190  
PMID:29777056   PMID:31053797   PMID:32296183   PMID:34273409   PMID:34390643   PMID:35064195   PMID:38237483   PMID:38431907   PMID:38474007  



SLC26A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387103,352,730 - 103,446,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7103,352,730 - 103,446,207 (-)EnsemblGRCh38hg38GRCh38
GRCh377102,993,177 - 103,086,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,780,413 - 102,873,834 (-)NCBINCBI36Build 36hg18NCBI36
Celera797,800,386 - 97,892,942 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef797,355,533 - 97,447,053 (-)NCBIHuRef
CHM1_17102,926,169 - 103,019,937 (-)NCBICHM1_1
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)NCBI
Slc26a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,013,999 - 22,070,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl522,015,653 - 22,070,602 (-)EnsemblGRCm39 Ensembl
GRCm38521,809,001 - 21,865,604 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,810,655 - 21,865,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv37521,316,473 - 21,371,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36521,322,479 - 21,377,428 (-)NCBIMGSCv36mm8
Celera518,781,281 - 18,837,517 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
Slc26a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,102,492 - 14,141,520 (+)NCBIGRCr8
mRatBN7.2413,210,260 - 13,249,289 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,210,260 - 13,249,289 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx418,355,676 - 18,394,701 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,172,343 - 14,209,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,541,325 - 12,580,338 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.049,795,811 - 9,860,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,821,541 - 9,860,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,822,682 - 9,861,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,657,314 - 8,697,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.148,657,313 - 8,697,539 (+)NCBI
Celera48,801,513 - 8,840,481 (+)NCBICelera
Cytogenetic Map4q11NCBI
Slc26a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,358,786 - 8,414,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554108,358,780 - 8,414,145 (-)NCBIChiLan1.0ChiLan1.0
SLC26A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26140,227,545 - 140,305,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17188,497,418 - 188,575,508 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0795,363,028 - 95,437,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17108,088,197 - 108,178,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensemblpanpan1.1panPan2
SLC26A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,783,795 - 16,841,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,788,759 - 16,839,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1816,426,732 - 16,484,887 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01817,074,350 - 17,132,490 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1817,079,270 - 17,131,472 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11816,839,580 - 16,897,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01816,777,413 - 16,835,901 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01817,046,210 - 17,104,115 (+)NCBIUU_Cfam_GSD_1.0
Slc26a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511858,980,819 - 59,021,086 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647920,104,595 - 20,144,601 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647920,104,625 - 20,145,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,378,776 - 103,453,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,382,558 - 103,420,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,990,590 - 114,062,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,347,276 - 72,418,311 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2172,347,792 - 72,393,765 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604231,608,735 - 31,657,804 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473925,930,221 - 25,995,828 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473925,925,835 - 25,998,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SLC26A5
274 total Variants

1 to 10 of 322 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_198999.3(SLC26A5):c.-53-2A>G single nucleotide variant Autosomal recessive nonsyndromic hearing loss 61 [RCV000005607]|not provided [RCV003311651]|not specified [RCV000425160] Chr7:103421569 [GRCh38]
Chr7:103062016 [GRCh37]
Chr7:7q22.1
pathogenic|benign|likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_198999.3(SLC26A5):c.117T>G (p.Pro39=) single nucleotide variant not provided [RCV000728668] Chr7:103421398 [GRCh38]
Chr7:103061845 [GRCh37]
Chr7:7q22.1
conflicting interpretations of pathogenicity|uncertain significance
NM_206883.2(SLC26A5):c.293-3003A>G single nucleotide variant Lung cancer [RCV000097351] Chr7:103416115 [GRCh38]
Chr7:103056562 [GRCh37]
Chr7:7q22.1
uncertain significance
NM_198999.3(SLC26A5):c.390A>C (p.Arg130Ser) single nucleotide variant Autosomal recessive nonsyndromic hearing loss 61 [RCV000083266] Chr7:103413015 [GRCh38]
Chr7:103053462 [GRCh37]
Chr7:7q22.1
pathogenic
NM_198999.3(SLC26A5):c.209G>A (p.Trp70Ter) single nucleotide variant Autosomal recessive nonsyndromic hearing loss 61 [RCV000083267] Chr7:103420821 [GRCh38]
Chr7:103061268 [GRCh37]
Chr7:7q22.1
pathogenic
NM_198999.3(SLC26A5):c.1813A>G (p.Thr605Ala) single nucleotide variant not provided [RCV000911831]|not specified [RCV000041658] Chr7:103377772 [GRCh38]
Chr7:103018219 [GRCh37]
Chr7:7q22.1
benign|likely benign
NM_198999.3(SLC26A5):c.-13A>C single nucleotide variant not provided [RCV001689597]|not specified [RCV000041655] Chr7:103421527 [GRCh38]
Chr7:103061974 [GRCh37]
Chr7:7q22.1
benign|likely benign
NM_198999.3(SLC26A5):c.1233+14A>G single nucleotide variant not provided [RCV001787844]|not specified [RCV000041656] Chr7:103391608 [GRCh38]
Chr7:103032055 [GRCh37]
Chr7:7q22.1
benign|likely benign
NM_198999.3(SLC26A5):c.1311+3G>T single nucleotide variant not specified [RCV000041657] Chr7:103390426 [GRCh38]
Chr7:103030873 [GRCh37]
Chr7:7q22.1
uncertain significance
NM_206883.2(SLC26A5):c.292+8_292+9dup duplication not provided [RCV001668174]|not specified [RCV000041659] Chr7:103420728..103420729 [GRCh38]
Chr7:103061176..103061177 [GRCh37]
Chr7:7q22.1
benign|likely benign|conflicting interpretations of pathogenicity
1 to 10 of 322 rows

Predicted Target Of
Summary Value
Count of predictions:3418
Count of miRNA genes:790
Interacting mature miRNAs:915
Transcripts:ENST00000306312, ENST00000339444, ENST00000354356, ENST00000356767, ENST00000393723, ENST00000393727, ENST00000393729, ENST00000393730, ENST00000393735, ENST00000423416, ENST00000432958, ENST00000445809, ENST00000454864, ENST00000456463, ENST00000487407
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597257865GWAS1353939_Hnormal QTL GWAS1353939 (human)1e-11normal7103421378103421379Human
597275131GWAS1371205_Hage-related hearing impairment QTL GWAS1371205 (human)7e-12age-related hearing impairment7103411631103411632Human
597221165GWAS1317239_Hage-related hearing impairment QTL GWAS1317239 (human)2e-13age-related hearing impairment7103421378103421379Human
597216573GWAS1312647_Hchronotype measurement QTL GWAS1312647 (human)7e-22sleep behavior trait (VT:0001501)7103424359103424360Human
597331772GWAS1427846_Hhearing loss QTL GWAS1427846 (human)3e-11hearing loss7103421378103421379Human
597115087GWAS1211161_Hneuroticism measurement, wellbeing measurement, depressive symptom measurement QTL GWAS1211161 (human)0.0000002wellness/fitness trait (VT:1000152)7103430746103430747Human
597470080GWAS1566154_Hchronotype measurement QTL GWAS1566154 (human)8e-09sleep behavior trait (VT:0001501)7103366166103366167Human
597275127GWAS1371201_Hage-related hearing impairment QTL GWAS1371201 (human)3e-14age-related hearing impairment7103421378103421379Human
597092361GWAS1188435_Hcircadian rhythm QTL GWAS1188435 (human)0.000002circadian rhythm7103426329103426330Human

1 to 9 of 9 rows
SGC32632  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377103,008,459 - 103,008,591UniSTSGRCh37
Build 367102,795,695 - 102,795,827RGDNCBI36
Celera797,815,676 - 97,815,808RGD
Cytogenetic Map7q22.1-q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
HuRef797,370,959 - 97,371,091UniSTS
CRA_TCAGchr7v27102,368,825 - 102,368,957UniSTS
GeneMap99-GB4 RH Map7522.18UniSTS
Whitehead-RH Map7491.1UniSTS
B296YE5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377103,033,947 - 103,034,187UniSTSGRCh37
Build 367102,821,183 - 102,821,423RGDNCBI36
Celera797,840,272 - 97,840,510RGD
Cytogenetic Map7q22.1UniSTS
HuRef797,394,391 - 97,394,629UniSTS
CRA_TCAGchr7v27102,394,313 - 102,394,553UniSTS
Whitehead-RH Map7491.0UniSTS
Whitehead-YAC Contig Map7 UniSTS
RH11504  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377103,008,370 - 103,008,515UniSTSGRCh37
Build 367102,795,606 - 102,795,751RGDNCBI36
Celera797,815,587 - 97,815,732RGD
Cytogenetic Map7q22.1-q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
HuRef797,370,870 - 97,371,015UniSTS
CRA_TCAGchr7v27102,368,736 - 102,368,881UniSTS
GeneMap99-GB4 RH Map7522.11UniSTS
RH69239  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377103,008,953 - 103,009,097UniSTSGRCh37
Build 367102,796,189 - 102,796,333RGDNCBI36
Celera797,816,170 - 97,816,314RGD
Cytogenetic Map7q22.1-q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
HuRef797,371,453 - 97,371,597UniSTS
CRA_TCAGchr7v27102,369,319 - 102,369,463UniSTS
GeneMap99-GB4 RH Map7521.67UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2343 2734 2142 4794 1661 2223 2 573 1539 412 2211 6516 5931 13 3601 754 1663 1544 169


1 to 30 of 39 rows
RefSeq Transcripts NG_023055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001167962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_206883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_206884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_206885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_120441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_120442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_120443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011516170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001744725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001744726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001744727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007060034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC004668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC093701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF523354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY256823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY256824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY256825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY289133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 39 rows

Ensembl Acc Id: ENST00000306312   ⟹   ENSP00000304783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,207 - 103,446,207 (-)Ensembl
Ensembl Acc Id: ENST00000339444   ⟹   ENSP00000342396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,352,730 - 103,446,151 (-)Ensembl
Ensembl Acc Id: ENST00000354356   ⟹   ENSP00000346325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,216 - 103,446,177 (-)Ensembl
Ensembl Acc Id: ENST00000356767   ⟹   ENSP00000349210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,352,730 - 103,446,151 (-)Ensembl
Ensembl Acc Id: ENST00000393723   ⟹   ENSP00000377324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,378 - 103,421,522 (-)Ensembl
Ensembl Acc Id: ENST00000393727   ⟹   ENSP00000377328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,378 - 103,421,522 (-)Ensembl
Ensembl Acc Id: ENST00000393729   ⟹   ENSP00000377330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,266 - 103,443,194 (-)Ensembl
Ensembl Acc Id: ENST00000393730   ⟹   ENSP00000377331
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,207 - 103,443,196 (-)Ensembl
Ensembl Acc Id: ENST00000393735   ⟹   ENSP00000377336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,352,730 - 103,446,151 (-)Ensembl
Ensembl Acc Id: ENST00000423416   ⟹   ENSP00000389018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,261 - 103,443,196 (-)Ensembl
Ensembl Acc Id: ENST00000432958   ⟹   ENSP00000389733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,212 - 103,446,177 (-)Ensembl
Ensembl Acc Id: ENST00000445809   ⟹   ENSP00000396833
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,207 - 103,443,196 (-)Ensembl
Ensembl Acc Id: ENST00000454864   ⟹   ENSP00000416502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,207 - 103,443,196 (-)Ensembl
Ensembl Acc Id: ENST00000456463   ⟹   ENSP00000395568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,374,266 - 103,443,194 (-)Ensembl
Ensembl Acc Id: ENST00000487407
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7103,388,523 - 103,446,177 (-)Ensembl
RefSeq Acc Id: NM_001167962   ⟹   NP_001161434
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,446,207 (-)NCBI
GRCh377102,993,177 - 103,086,624 (-)ENTREZGENE
HuRef797,355,533 - 97,447,053 (-)ENTREZGENE
CHM1_17102,947,966 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,760,648 (-)NCBI
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001321787   ⟹   NP_001308716
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,352,730 - 103,446,207 (-)NCBI
CHM1_17102,926,169 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198999   ⟹   NP_945350
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,446,207 (-)NCBI
GRCh377102,993,177 - 103,086,624 (-)ENTREZGENE
Build 367102,801,890 - 102,873,834 (-)NCBI Archive
HuRef797,355,533 - 97,447,053 (-)ENTREZGENE
CHM1_17102,947,966 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,760,648 (-)NCBI
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_206883   ⟹   NP_996766
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,352,730 - 103,446,207 (-)NCBI
GRCh377102,993,177 - 103,086,624 (-)ENTREZGENE
Build 367102,780,413 - 102,873,834 (-)NCBI Archive
HuRef797,355,533 - 97,447,053 (-)ENTREZGENE
CHM1_17102,926,169 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBI
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_206884   ⟹   NP_996767
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,352,730 - 103,446,207 (-)NCBI
GRCh377102,993,177 - 103,086,624 (-)ENTREZGENE
Build 367102,780,413 - 102,873,834 (-)NCBI Archive
HuRef797,355,533 - 97,447,053 (-)ENTREZGENE
CHM1_17102,926,169 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBI
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_206885   ⟹   NP_996768
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,352,730 - 103,446,207 (-)NCBI
GRCh377102,993,177 - 103,086,624 (-)ENTREZGENE
Build 367102,780,413 - 102,873,834 (-)NCBI Archive
HuRef797,355,533 - 97,447,053 (-)ENTREZGENE
CHM1_17102,926,169 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBI
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NR_120441
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,443,211 (-)NCBI
CHM1_17102,947,966 - 103,016,971 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,757,652 (-)NCBI
Sequence:
RefSeq Acc Id: NR_120442
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,443,211 (-)NCBI
CHM1_17102,947,966 - 103,016,971 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,757,652 (-)NCBI
Sequence:
RefSeq Acc Id: NR_120443
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,443,211 (-)NCBI
CHM1_17102,947,966 - 103,016,971 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,757,652 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135801
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,446,207 (-)NCBI
CHM1_17102,947,966 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,688,657 - 104,760,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135802
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,352,730 - 103,446,207 (-)NCBI
CHM1_17102,926,169 - 103,019,937 (-)NCBI
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011516170   ⟹   XP_011514472
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,374,207 - 103,446,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047420347   ⟹   XP_047276303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,379,253 - 103,446,207 (-)NCBI
RefSeq Acc Id: XM_054358167   ⟹   XP_054214142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07104,693,703 - 104,760,648 (-)NCBI
RefSeq Acc Id: XR_007060034
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,389,341 - 103,446,207 (-)NCBI
RefSeq Acc Id: XR_008487614
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07104,703,793 - 104,760,648 (-)NCBI
1 to 30 of 34 rows
Protein RefSeqs NP_001161434 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308716 (Get FASTA)   NCBI Sequence Viewer  
  NP_945350 (Get FASTA)   NCBI Sequence Viewer  
  NP_996766 (Get FASTA)   NCBI Sequence Viewer  
  NP_996767 (Get FASTA)   NCBI Sequence Viewer  
  NP_996768 (Get FASTA)   NCBI Sequence Viewer  
  XP_011514472 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276303 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214142 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00833 (Get FASTA)   NCBI Sequence Viewer  
  AAI00834 (Get FASTA)   NCBI Sequence Viewer  
  AAI00835 (Get FASTA)   NCBI Sequence Viewer  
  AAI00836 (Get FASTA)   NCBI Sequence Viewer  
  AAP31417 (Get FASTA)   NCBI Sequence Viewer  
  AAP31532 (Get FASTA)   NCBI Sequence Viewer  
  AAP31533 (Get FASTA)   NCBI Sequence Viewer  
  AAP31534 (Get FASTA)   NCBI Sequence Viewer  
  AAP43685 (Get FASTA)   NCBI Sequence Viewer  
  AAP43686 (Get FASTA)   NCBI Sequence Viewer  
  EAW83334 (Get FASTA)   NCBI Sequence Viewer  
  EAW83335 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000304783
  ENSP00000304783.3
  ENSP00000342396
  ENSP00000342396.6
  ENSP00000349210
  ENSP00000349210.4
  ENSP00000377324.1
  ENSP00000377331.1
  ENSP00000377336
1 to 30 of 34 rows
1 to 5 of 23 rows
1 to 5 of 23 rows
RefSeq Acc Id: NP_996768   ⟸   NM_206885
- Peptide Label: isoform d
- UniProtKB: P58743 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_996766   ⟸   NM_206883
- Peptide Label: isoform b
- UniProtKB: Q7Z7F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_996767   ⟸   NM_206884
- Peptide Label: isoform c
- UniProtKB: Q496J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161434   ⟸   NM_001167962
- Peptide Label: isoform e
- UniProtKB: Q7Z7F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_945350   ⟸   NM_198999
- Peptide Label: isoform a
- UniProtKB: Q86UG0 (UniProtKB/Swiss-Prot),   Q86UF9 (UniProtKB/Swiss-Prot),   Q86UF8 (UniProtKB/Swiss-Prot),   Q7Z7F3 (UniProtKB/Swiss-Prot),   Q496J2 (UniProtKB/Swiss-Prot),   P58743 (UniProtKB/Swiss-Prot),   Q7Z7F4 (UniProtKB/TrEMBL)
- Sequence:
SLC26A/SulP transporter   STAS

Name Modeler Protein Id AA Range Protein Structure
AF-P58743-F1-model_v2 AlphaFold P58743 1-744 view protein structure

RGD ID:7211571
Promoter ID:EPDNEW_H11530
Type:initiation region
Name:SLC26A5_1
Description:solute carrier family 26 member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387103,446,167 - 103,446,227EPDNEW


1 to 40 of 55 rows
Database
Acc Id
Source(s)
COSMIC SLC26A5 COSMIC
Ensembl Genes ENSG00000170615 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000306312 ENTREZGENE
  ENST00000306312.8 UniProtKB/Swiss-Prot
  ENST00000339444 ENTREZGENE
  ENST00000339444.10 UniProtKB/Swiss-Prot
  ENST00000356767 ENTREZGENE
  ENST00000356767.8 UniProtKB/Swiss-Prot
  ENST00000393723.2 UniProtKB/Swiss-Prot
  ENST00000393730.5 UniProtKB/Swiss-Prot
  ENST00000393735 ENTREZGENE
  ENST00000393735.6 UniProtKB/Swiss-Prot
  ENST00000423416 ENTREZGENE
  ENST00000432958 ENTREZGENE
  ENST00000432958.6 UniProtKB/Swiss-Prot
  ENST00000445809 ENTREZGENE
  ENST00000454864 ENTREZGENE
Gene3D-CATH 3.30.750.24 UniProtKB/Swiss-Prot
GTEx ENSG00000170615 GTEx
HGNC ID HGNC:9359 ENTREZGENE
Human Proteome Map SLC26A5 Human Proteome Map
InterPro S04_transporter_CS UniProtKB/Swiss-Prot
  SLC26A/SulP_dom UniProtKB/Swiss-Prot
  SLC26A/SulP_fam UniProtKB/Swiss-Prot
  STAS_dom UniProtKB/Swiss-Prot
  STAS_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:375611 UniProtKB/Swiss-Prot
NCBI Gene SLC26A5 ENTREZGENE
OMIM 604943 OMIM
PANTHER PTHR11814 UniProtKB/Swiss-Prot
Pfam STAS UniProtKB/Swiss-Prot
  Sulfate_transp UniProtKB/Swiss-Prot
PharmGKB PA33731 PharmGKB
PROSITE SLC26A UniProtKB/Swiss-Prot
  STAS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52091 UniProtKB/Swiss-Prot
UniProt E9PCM2_HUMAN UniProtKB/TrEMBL
  F8WD50_HUMAN UniProtKB/TrEMBL
  F8WDL4_HUMAN UniProtKB/TrEMBL
  P58743 ENTREZGENE
1 to 40 of 55 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 SLC26A5  solute carrier family 26 member 5    solute carrier family 26 (anion exchanger), member 5  Symbol and/or name change 5135510 APPROVED
2016-02-25 SLC26A5  solute carrier family 26 (anion exchanger), member 5  PRES  prestin (motor protein)  Data merged from RGD:736364 737654 PROVISIONAL
2013-07-23 SLC26A5  solute carrier family 26 (anion exchanger), member 5    solute carrier family 26, member 5 (prestin)  Symbol and/or name change 5135510 APPROVED