Slc26a5 (solute carrier family 26 member 5) - Rat Genome Database

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Gene: Slc26a5 (solute carrier family 26 member 5) Ictidomys tridecemlineatus
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Symbol: Slc26a5
Name: solute carrier family 26 member 5
RGD ID: 12685836
Description: ENCODES a protein that exhibits identical protein binding (ortholog); spectrin binding (ortholog); transcription factor binding (ortholog); INVOLVED IN anion transmembrane transport (ortholog); chloride transmembrane transport (ortholog); cochlea development (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 61 (ortholog); Deafness (ortholog); Hearing Loss (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prestin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511858,980,819 - 59,021,086 (+)NCBI
SpeTri2.0NW_00493647920,104,625 - 20,145,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Slc26a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511858,980,819 - 59,021,086 (+)NCBI
SpeTri2.0NW_00493647920,104,625 - 20,145,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7103,352,730 - 103,446,207 (-)EnsemblGRCh38hg38GRCh38
GRCh387103,352,598 - 103,446,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377102,993,177 - 103,086,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,780,413 - 102,873,834 (-)NCBINCBI36hg18NCBI36
Celera797,800,386 - 97,892,942 (-)NCBI
Cytogenetic Map7q22.1NCBI
HuRef797,355,533 - 97,447,053 (-)NCBIHuRef
CHM1_17102,926,169 - 103,019,937 (-)NCBICHM1_1
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)NCBI
Slc26a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,013,999 - 22,070,602 (-)NCBIGRCm39mm39
GRCm39 Ensembl522,015,653 - 22,070,602 (-)Ensembl
GRCm38521,809,001 - 21,865,604 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,810,655 - 21,865,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv37521,316,473 - 21,371,422 (-)NCBIGRCm37mm9NCBIm37
MGSCv36521,322,479 - 21,377,428 (-)NCBImm8
Celera518,781,281 - 18,837,517 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
Slc26a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2413,210,260 - 13,249,289 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl413,210,260 - 13,249,289 (+)Ensembl
Rnor_6.049,795,811 - 9,860,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,821,541 - 9,860,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,822,682 - 9,861,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,657,314 - 8,697,539 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.148,657,313 - 8,697,539 (+)NCBI
Celera48,801,513 - 8,840,481 (+)NCBICelera
Cytogenetic Map4q11NCBI
Slc26a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,358,786 - 8,414,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554108,358,780 - 8,414,145 (-)NCBIChiLan1.0ChiLan1.0
SLC26A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17108,088,197 - 108,178,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0795,363,028 - 95,437,527 (-)NCBIMhudiblu_PPA_v0panPan3
SLC26A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,783,795 - 16,841,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,788,759 - 16,839,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1816,426,732 - 16,484,887 (+)NCBI
ROS_Cfam_1.01817,074,350 - 17,132,490 (+)NCBI
UMICH_Zoey_3.11816,839,580 - 16,897,324 (+)NCBI
UNSW_CanFamBas_1.01816,777,413 - 16,835,901 (+)NCBI
UU_Cfam_GSD_1.01817,046,210 - 17,104,115 (+)NCBI
SLC26A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,378,776 - 103,453,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,382,558 - 103,420,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,990,590 - 114,062,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,347,276 - 72,418,311 (-)NCBI
ChlSab1.1 Ensembl2172,347,792 - 72,393,765 (-)Ensembl
Vero_WHO_p1.0NW_02366604231,608,735 - 31,657,804 (+)NCBI
Slc26a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473925,925,835 - 25,998,410 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005319464   ⟹   XP_005319521
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511858,980,819 - 59,021,086 (+)NCBI
SpeTri2.0NW_00493647920,104,625 - 20,145,392 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040291676   ⟹   XP_040147610
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511858,980,819 - 59,007,590 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005319521 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147610 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3277826 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005319521   ⟸   XM_005319464
- Peptide Label: isoform X2
- UniProtKB: I3MHX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147610   ⟸   XM_040291676
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011743 ENTREZGENE
Ensembl Protein ENSSTOP00000010544 ENTREZGENE
NCBI Gene Slc26a5 ENTREZGENE
UniProt I3MHX7 ENTREZGENE