SLC26A5 (solute carrier family 26 member 5) - Rat Genome Database

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Gene: SLC26A5 (solute carrier family 26 member 5) Pan paniscus
Analyze
Symbol: SLC26A5
Name: solute carrier family 26 member 5
RGD ID: 11992157
Description: ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); identical protein binding (ortholog); transcription factor binding (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 61 (ortholog); Deafness (ortholog); genetic disease (ortholog); FOUND IN basolateral plasma membrane (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prestin; solute carrier family 26, member 5 (prestin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26140,227,545 - 140,305,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17188,497,418 - 188,575,508 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0795,363,028 - 95,437,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17108,088,197 - 108,178,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC26A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26140,227,545 - 140,305,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17188,497,418 - 188,575,508 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0795,363,028 - 95,437,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17108,088,197 - 108,178,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensemblpanpan1.1panPan2
SLC26A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387103,352,730 - 103,446,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7103,352,730 - 103,446,207 (-)EnsemblGRCh38hg38GRCh38
GRCh377102,993,177 - 103,086,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,780,413 - 102,873,834 (-)NCBINCBI36Build 36hg18NCBI36
Celera797,800,386 - 97,892,942 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef797,355,533 - 97,447,053 (-)NCBIHuRef
CHM1_17102,926,169 - 103,019,937 (-)NCBICHM1_1
T2T-CHM13v2.07104,667,171 - 104,760,648 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27102,353,543 - 102,447,443 (-)NCBI
Slc26a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,013,999 - 22,070,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl522,015,653 - 22,070,602 (-)EnsemblGRCm39 Ensembl
GRCm38521,809,001 - 21,865,604 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,810,655 - 21,865,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv37521,316,473 - 21,371,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36521,322,479 - 21,377,428 (-)NCBIMGSCv36mm8
Celera518,781,281 - 18,837,517 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
Slc26a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,102,492 - 14,141,520 (+)NCBIGRCr8
mRatBN7.2413,210,260 - 13,249,289 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,210,260 - 13,249,289 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx418,355,676 - 18,394,701 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,172,343 - 14,209,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,541,325 - 12,580,338 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.049,795,811 - 9,860,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,821,541 - 9,860,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,822,682 - 9,861,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,657,314 - 8,697,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.148,657,313 - 8,697,539 (+)NCBI
Celera48,801,513 - 8,840,481 (+)NCBICelera
Cytogenetic Map4q11NCBI
Slc26a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,358,786 - 8,414,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554108,358,780 - 8,414,145 (-)NCBIChiLan1.0ChiLan1.0
SLC26A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,783,795 - 16,841,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,788,759 - 16,839,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1816,426,732 - 16,484,887 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01817,074,350 - 17,132,490 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1817,079,270 - 17,131,472 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11816,839,580 - 16,897,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01816,777,413 - 16,835,901 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01817,046,210 - 17,104,115 (+)NCBIUU_Cfam_GSD_1.0
Slc26a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511858,980,819 - 59,021,086 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647920,104,595 - 20,144,601 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647920,104,625 - 20,145,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,378,776 - 103,453,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,382,558 - 103,420,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,990,590 - 114,062,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,347,276 - 72,418,311 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2172,347,792 - 72,393,765 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604231,608,735 - 31,657,804 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473925,930,221 - 25,995,828 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473925,925,835 - 25,998,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034964701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000064536   ⟹   ENSPPAP00000041610
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064538   ⟹   ENSPPAP00000041612
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064540   ⟹   ENSPPAP00000041614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,088,197 - 108,178,578 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064544   ⟹   ENSPPAP00000041618
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,109,627 - 108,178,578 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064550   ⟹   ENSPPAP00000041624
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,109,627 - 108,178,578 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064558   ⟹   ENSPPAP00000041632
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,112,283 - 108,156,932 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064560   ⟹   ENSPPAP00000041634
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7108,124,359 - 108,156,932 (-)Ensembl
RefSeq Acc Id: XM_034964701   ⟹   XP_034820592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26140,227,545 - 140,305,630 (-)NCBI
NHGRI_mPanPan17188,497,418 - 188,575,508 (-)NCBI
Mhudiblu_PPA_v0795,363,028 - 95,437,527 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034820592 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041610.1
  ENSPPAP00000041612.1
  ENSPPAP00000041614.1
  ENSPPAP00000041618.1
  ENSPPAP00000041624.1
  ENSPPAP00000041632.1
  ENSPPAP00000041634.1
RefSeq Acc Id: XP_034820592   ⟸   XM_034964701
- UniProtKB: A0A2R9CKT3 (UniProtKB/TrEMBL),   A0A2R9CI47 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000041612   ⟸   ENSPPAT00000064538
RefSeq Acc Id: ENSPPAP00000041610   ⟸   ENSPPAT00000064536
RefSeq Acc Id: ENSPPAP00000041624   ⟸   ENSPPAT00000064550
RefSeq Acc Id: ENSPPAP00000041632   ⟸   ENSPPAT00000064558
RefSeq Acc Id: ENSPPAP00000041614   ⟸   ENSPPAT00000064540
RefSeq Acc Id: ENSPPAP00000041618   ⟸   ENSPPAT00000064544
RefSeq Acc Id: ENSPPAP00000041634   ⟸   ENSPPAT00000064560
Protein Domains
SLC26A/SulP transporter   STAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064536.1 UniProtKB/TrEMBL
  ENSPPAT00000064538.1 UniProtKB/TrEMBL
  ENSPPAT00000064540.1 UniProtKB/TrEMBL
  ENSPPAT00000064544.1 UniProtKB/TrEMBL
  ENSPPAT00000064550.1 UniProtKB/TrEMBL
  ENSPPAT00000064558.1 UniProtKB/TrEMBL
  ENSPPAT00000064560.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.750.24 UniProtKB/TrEMBL
InterPro S04_transporter_CS UniProtKB/TrEMBL
  SLC26A/SulP_dom UniProtKB/TrEMBL
  SLC26A/SulP_fam UniProtKB/TrEMBL
  STAS_dom UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC26A5 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF32 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PROSITE SLC26A UniProtKB/TrEMBL
  STAS UniProtKB/TrEMBL
Superfamily-SCOP SSF52091 UniProtKB/TrEMBL
UniProt A0A2R9CI47 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CI49_PANPA UniProtKB/TrEMBL
  A0A2R9CI58_PANPA UniProtKB/TrEMBL
  A0A2R9CI68_PANPA UniProtKB/TrEMBL
  A0A2R9CKT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CRI1_PANPA UniProtKB/TrEMBL
  A0A2R9CRJ1_PANPA UniProtKB/TrEMBL