CSNK2B (casein kinase 2 beta) - Rat Genome Database

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Gene: CSNK2B (casein kinase 2 beta) Homo sapiens
Analyze
Symbol: CSNK2B
Name: casein kinase 2 beta
RGD ID: 1347139
HGNC Page HGNC:2460
Description: Enables several functions, including RNA polymerase II-specific DNA-binding transcription factor binding activity; chromatin binding activity; and identical protein binding activity. Involved in several processes, including adiponectin-activated signaling pathway; positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and symbiont-mediated disruption of host cell PML body. Located in cytoplasm; nucleus; and plasma membrane. Part of protein kinase CK2 complex. Is active in PML body and chromatin. Biomarker of leiomyoma.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: alternative name: G5a, phosvitin; casein kinase 2, beta polypeptide; casein kinase II b subunit splicing isoform 132; casein kinase II b subunit splicing isoform 247; casein kinase II b subunit splicing isoform 318; casein kinase II b subunit splicing isoform 660; casein kinase II b subunit splicing isoform 806; Casein kinase II beta subunit; casein kinase II subunit beta; chimera CSNK2B-LY6G5B splicing isoform 1072; chimera CSNK2B-LY6G5B splicing isoform 1103; chimera CSNK2B-LY6G5B splicing isoform 532; chimera CSNK2B-LY6G5B splicing isoform 560; chimera CSNK2B-LY6G5B splicing isoform 562; CK II beta; CK2B; CK2N; Ckb1; Ckb2; CSK2B; CSNK2B-LY6G5B-1072; CSNK2B-LY6G5B-1103; CSNK2B-LY6G5B-532; CSNK2B-LY6G5B-560; CSNK2B-LY6G5B-562; G5A; MGC138222; MGC138224; phosvitin; POBINDS
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,666,080 - 31,670,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,665,227 - 31,670,343 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,633,857 - 31,637,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,741,636 - 31,745,822 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,741,635 - 31,745,822NCBI
Celera633,231,878 - 33,236,064 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,419,882 - 31,424,068 (+)NCBIHuRef
CHM1_1631,635,793 - 31,639,979 (+)NCBICHM1_1
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
CSNK2BHumanautism spectrum disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
CSNK2BHumanautosomal dominant intellectual developmental disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal dominant non-syndromic intellectual disabilityClinVarPMID:25741868
CSNK2BHumanenophthalmos  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: EnophthalmosClinVarPMID:25741868 more ...
CSNK2BHumanepilepsy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SeizureClinVar 
CSNK2BHumanepilepsy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SeizureClinVarPMID:25741868 more ...
CSNK2BHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
CSNK2BHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
CSNK2BHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
CSNK2BHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
CSNK2BHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
CSNK2BHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28333917
CSNK2BHumanintellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: intellectual disabilitiesClinVarPMID:25741868 more ...
CSNK2BHumanMalocclusion, Angle Class III  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hapsburg jawClinVarPMID:25741868 more ...
CSNK2BHumanmegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
CSNK2BHumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Poirier-Bienvenu neurodevelopmental syndromeClinVarPMID:30655572
CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Poirier-Bienvenu neurodevelopmental syndromeClinVarPMID:25741868 more ...
CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Poirier-Bienvenu neurodevelopmental syndromeClinVarPMID:25741868
CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Poirier-Bienvenu neurodevelopmental syndromeClinVarPMID:25741868 more ...
CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Poirier-Bienvenu neurodevelopmental syndromeClinVarPMID:31784560
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CSNK2BHumanadult T-cell leukemia/lymphoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26437031
CSNK2BHumanSkin Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18572023
CSNK2BHumansquamous cell carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18572023
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CSNK2BHumanPOIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME  IAGP 7240710 OMIM 

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Original Reference(s)
CSNK2BHuman1,2-dimethylhydrazine multiple interactionsISOCsnk2b (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CSNK2B mRNACTDPMID:22206623
CSNK2BHuman17alpha-ethynylestradiol increases expressionISOCsnk2b (Mus musculus)6480464Ethinyl Estradiol results in increased expression of CSNK2B mRNACTDPMID:17942748
CSNK2BHuman17alpha-ethynylestradiol decreases expressionISOCsnk2b (Rattus norvegicus)6480464Ethinyl Estradiol results in decreased expression of CSNK2B mRNACTDPMID:17108234 and PMID:17557909
CSNK2BHuman17alpha-ethynylestradiol multiple interactionsISOCsnk2b (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CSNK2B mRNACTDPMID:17942748
CSNK2BHuman17beta-estradiol multiple interactionsISOCsnk2b (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in decreased expression of CSNK2B mRNACTDPMID:26496021
CSNK2BHuman17beta-estradiol increases expressionISOCsnk2b (Rattus norvegicus)6480464Estradiol results in increased expression of CSNK2B mRNACTDPMID:32145629
CSNK2BHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCsnk2b (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CSNK2B mRNACTDPMID:20702594
CSNK2BHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCsnk2b (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of CSNK2B mRNACTDPMID:33387578
CSNK2BHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCsnk2b (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of CSNK2B mRNACTDPMID:34747641
CSNK2BHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCsnk2b (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CSNK2B mRNACTDPMID:21354282
CSNK2BHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCsnk2b (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CSNK2B mRNACTDPMID:17942748
CSNK2BHuman2,3,7,8-Tetrachlorodibenzofuran affects expressionISOCsnk2b (Mus musculus)64804642 more ...CTDPMID:20702594
CSNK2BHuman4,4'-diaminodiphenylmethane increases expressionISOCsnk2b (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of CSNK2B mRNACTDPMID:18648102
CSNK2BHuman4,4'-sulfonyldiphenol increases expressionISOCsnk2b (Mus musculus)6480464bisphenol S results in increased expression of CSNK2B mRNACTDPMID:39298647
CSNK2BHuman5-aza-2'-deoxycytidine increases expressionISOCsnk2b (Mus musculus)6480464Decitabine results in increased expression of CSNK2B mRNACTDPMID:27915011
CSNK2BHuman5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionISOCsnk2b (Rattus norvegicus)6480464Omeprazole affects the expression of CSNK2B mRNACTDPMID:19483382
CSNK2BHuman6-propyl-2-thiouracil affects expressionISOCsnk2b (Rattus norvegicus)6480464Propylthiouracil affects the expression of CSNK2B mRNACTDPMID:19483382
CSNK2BHumanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of CSNK2B mRNACTDPMID:17218384
CSNK2BHumanamiodarone affects expressionISOCsnk2b (Rattus norvegicus)6480464Amiodarone affects the expression of CSNK2B mRNACTDPMID:19483382
CSNK2BHumanammonium chloride affects expressionISOCsnk2b (Rattus norvegicus)6480464Ammonium Chloride affects the expression of CSNK2B mRNACTDPMID:16483693

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Biological Process
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Original Reference(s)
CSNK2BHumanadiponectin-activated signaling pathway involved_inIDA 150520179 PMID:19233263BHF-UCLPMID:19233263
CSNK2BHumanendothelial tube morphogenesis involved_inIMP 150520179 PMID:19592636BHF-UCLPMID:19592636
CSNK2BHumanliver regeneration  ISOCsnk2b (Rattus norvegicus)9068941 RGDPMID:8573159 and REF_RGD_ID:11565141
CSNK2BHumannegative regulation of blood vessel endothelial cell migration involved_inIDA 150520179 PMID:19592636BHF-UCLPMID:19592636
CSNK2BHumannegative regulation of cell population proliferation involved_inTAS 150520179 PMID:19324893BHF-UCLPMID:19324893
CSNK2BHumannegative regulation of proteasomal ubiquitin-dependent protein catabolic process involved_inIDA 150520179 PMID:28031292ARUK-UCLPMID:28031292
CSNK2BHumannegative regulation of viral life cycle involved_inIDA 150520179 PMID:31341047UniProtPMID:31341047
CSNK2BHumanpeptidyl-threonine phosphorylation involved_inIDA 150520179 PMID:15723517CAFAPMID:15723517
CSNK2BHumanphosphorylation involved_inISOCSNK2B (Chlorocebus sabaeus)9068941 PMID:20016039AgBasePMID:20016039
CSNK2BHumanpositive regulation of activin receptor signaling pathway involved_inIMP 150520179 PMID:19592636BHF-UCLPMID:19592636
CSNK2BHumanpositive regulation of SMAD protein signal transduction involved_inIDA 150520179 PMID:19592636BHF-UCLPMID:19592636
CSNK2BHumanprotein-containing complex assembly involved_inNAS 150520179 PMID:19324893BHF-UCLPMID:19324893
CSNK2BHumanresponse to testosterone  ISOCsnk2b (Rattus norvegicus)9068941 RGDPMID:8173590 and REF_RGD_ID:728274
CSNK2BHumansignal transduction involved_inTAS 150520179 PMID:2513884UniProtPMID:2513884
CSNK2BHumansymbiont-mediated disruption of host cell PML body involved_inIDA 150520179 PMID:20719947UniProtPMID:20719947
CSNK2BHumanWnt signaling pathway involved_inIEAUniProtKB-KW:KW-0879150520179 UniProtGO_REF:0000043
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Cellular Component
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CSNK2BHumancell projection  ISOCsnk2b (Rattus norvegicus)9068941 RGDPMID:11068334 and REF_RGD_ID:11565824
CSNK2BHumanchromatin  ISOCsnk2b (Rattus norvegicus)9068941 RGDPMID:9916157 and REF_RGD_ID:11565845
CSNK2BHumanchromatin is_active_inIDA 150520179 PMID:31341047UniProtPMID:31341047
CSNK2BHumancytoplasm located_inIDA 150520179 PMID:19233263BHF-UCLPMID:19233263
CSNK2BHumancytoplasm is_active_inIBAFB:FBgn0000259 more ...150520179 GO_CentralGO_REF:0000033
CSNK2BHumancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-201717 more ...
CSNK2BHumanextracellular exosome located_inHDA 150520179 PMID:20458337UniProtPMID:20458337
CSNK2BHumanextracellular region located_inTAS 150520179 ReactomeReactome:R-HSA-6798748 and Reactome:R-HSA-6800434
CSNK2BHumanfibrillar center located_inIDA 150520179 HPAGO_REF:0000052
CSNK2BHumanficolin-1-rich granule lumen located_inTAS 150520179 ReactomeReactome:R-HSA-6800434
CSNK2BHumannuclear matrix  ISOCsnk2b (Rattus norvegicus)9068941 RGDPMID:9548568 and REF_RGD_ID:11565140
CSNK2BHumannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
CSNK2BHumannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-6805059 more ...
CSNK2BHumannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
CSNK2BHumannucleus located_inHDA 150520179 PMID:21630459UniProtPMID:21630459
CSNK2BHumannucleus located_inIDA 150520179 PMID:21282530UniProtPMID:21282530
CSNK2BHumannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
CSNK2BHumanPcG protein complex located_inIDA 150520179 PMID:21282530UniProtPMID:21282530
CSNK2BHumanplasma membrane located_inIDA 150520179 PMID:19233263BHF-UCLPMID:19233263
CSNK2BHumanPML body is_active_inIDA 150520179 PMID:20719947UniProtPMID:20719947
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Molecular Function
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CSNK2BHumanchromatin binding enablesIDA 150520179 PMID:25519132MGIPMID:25519132
CSNK2BHumanidentical protein binding enablesIPIUniProtKB:P67870150520179 PMID:10094392 more ...IntActPMID:10094392 more ...
CSNK2BHumankinase activity enablesIEAUniProtKB-KW:KW-0418150520179 UniProtGO_REF:0000043
CSNK2BHumanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
CSNK2BHumanprotein binding enablesIPIUniProtKB:P68400150520179 PMID:11574463 more ...IntActPMID:11574463 more ...
CSNK2BHumanprotein binding enablesIPIUniProtKB:O00257-3 more ...150520179 PMID:21282530IntActPMID:21282530
CSNK2BHumanprotein binding enablesIPIUniProtKB:Q9JK25150520179 PMID:20664522IntActPMID:20664522
CSNK2BHumanprotein binding enablesIPIUniProtKB:P19784150520179 PMID:23455922 and PMID:26496610IntActPMID:23455922 and PMID:26496610
CSNK2BHumanprotein binding enablesIPIUniProtKB:P97784 and UniProtKB:Q9WTL8150520179 PMID:26562092IntActPMID:26562092
CSNK2BHumanprotein binding enablesIPIUniProtKB:O00555150520179 PMID:21078624IntActPMID:21078624
CSNK2BHumanprotein binding enablesIPIUniProtKB:P68400 and UniProtKB:Q96EB6150520179 PMID:21968188IntActPMID:21968188
CSNK2BHumanprotein binding enablesIPIUniProtKB:Q6VY07150520179 PMID:16977309IntActPMID:16977309
CSNK2BHumanprotein binding enablesIPIUniProtKB:P51812150520179 PMID:31980649IntActPMID:31980649
CSNK2BHumanprotein binding enablesIPIUniProtKB:P19784 more ...150520179 PMID:27705803IntActPMID:27705803
CSNK2BHumanprotein binding enablesIPIUniProtKB:O08785 more ...150520179 PMID:23555304IntActPMID:23555304
CSNK2BHumanprotein binding enablesIPIUniProtKB:O75582 more ...150520179 PMID:33961781IntActPMID:33961781
CSNK2BHumanprotein binding enablesIPIUniProtKB:O75582 more ...150520179 PMID:21988832IntActPMID:21988832
CSNK2BHumanprotein binding enablesIPIUniProtKB:P19784 more ...150520179 PMID:35271311IntActPMID:35271311
CSNK2BHumanprotein binding enablesIPIUniProtKB:O43711 more ...150520179 PMID:32296183IntActPMID:32296183
CSNK2BHumanprotein binding enablesIPIUniProtKB:O75582 more ...150520179 PMID:32707033IntActPMID:32707033
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RGD Manual Annotations


  
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CSNK2BHumanmitochondrial autophagy pathway   TAS 10400888 RGD 

Imported Annotations - KEGG (archival)

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CSNK2BHumanmeasles pathway  IEA 6907045 KEGGhsa:05162
CSNK2BHumanribosome biogenesis pathway   IEA 6907045 KEGGhsa:03008
CSNK2BHumanWnt signaling pathway  IEA 6907045 KEGGhsa:04310

Imported Annotations - PID (archival)

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CSNK2BHumanE-cadherin signaling pathway  EXP 6484113 PIDPID:200124
CSNK2BHumannuclear factor kappa B signaling pathway   EXP 6484113 PIDPID:200021
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CSNK2BHumanAbnormal facial shape  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dysmorphic faciesClinVarPMID:25741868 more ...
CSNK2BHumanAsymmetry of the ears  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Asymmetry of the earsClinVarPMID:25741868 more ...
CSNK2BHumanAutistic behavior  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
CSNK2BHumanDeeply set eye  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: EnophthalmosClinVarPMID:25741868 more ...
CSNK2BHumanGlobal developmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental delayClinVar 
CSNK2BHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
CSNK2BHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868 more ...
CSNK2BHumanMandibular prognathia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Mandibular prognathiaClinVarPMID:25741868 more ...
CSNK2BHumanMegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
CSNK2BHumanPointed chin  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pointed chinClinVarPMID:25741868 more ...
CSNK2BHumanSeizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SeizuresClinVar 
CSNK2BHumanSeizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SeizureClinVarPMID:25741868 more ...
CSNK2BHumanSyndactyly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Webbed fingers or toesClinVarPMID:25741868 more ...
CSNK2BHumanTapered finger  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Tapered fingersClinVarPMID:25741868 more ...
CSNK2BHumanThin upper lip vermilion  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Thin upper lip vermilionClinVarPMID:25741868 more ...
CSNK2BHumanToe clinodactyly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Toe clinodactylyClinVarPMID:25741868 more ...
CSNK2BHumanUnderdeveloped nasal alae  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Underdeveloped nasal alaeClinVarPMID:25741868 more ...
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Reference Title
Reference Citation
1. Morphological changes and expression of protein kinase CK2 beta subunit in the microglia after hypoglossal nerve transection. Gesase AP and Kiyama H, J Neurocytol. 2000 Jan;29(1):61-6.
2. Expression of protein kinase CK2 in astroglial cells of normal and neovascularized retina. Kramerov AA, etal., Am J Pathol. 2006 May;168(5):1722-36.
3. Quantitative proteome profiling of human myoma and myometrium tissue reveals kinase expression signatures with potential for therapeutic intervention. Lemeer S, etal., Proteomics. 2015 Jan;15(2-3):356-64. doi: 10.1002/pmic.201400213. Epub 2014 Dec 17.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Selective removal of mitochondria via mitophagy: distinct pathways for different mitochondrial stresses. Wei H, etal., Biochim Biophys Acta. 2015 Oct;1853(10 Pt B):2784-90. doi: 10.1016/j.bbamcr.2015.03.013. Epub 2015 Apr 1.
8. Differential gene expression in infarct scar and viable myocardium from rat heart following coronary ligation. Xu YJ, etal., J Cell Mol Med. 2004 Jan-Mar;8(1):85-92.
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PMID:1541298   PMID:1694965   PMID:1856204   PMID:1939094   PMID:2276748   PMID:2300566   PMID:2513884   PMID:2666134   PMID:7491787   PMID:7578274   PMID:7689229   PMID:7768894  
PMID:7794916   PMID:7838153   PMID:7942276   PMID:8089108   PMID:8107101   PMID:8119294   PMID:8139011   PMID:8349691   PMID:8548340   PMID:8659106   PMID:8806611   PMID:8806671  
PMID:8812450   PMID:8943850   PMID:9013635   PMID:9042965   PMID:9092824   PMID:9151826   PMID:9185604   PMID:9188720   PMID:9299532   PMID:9478999   PMID:9503014   PMID:9571630  
PMID:9654140   PMID:9677319   PMID:9685505   PMID:9738462   PMID:9881639   PMID:10094392   PMID:10094400   PMID:10214938   PMID:10327653   PMID:10381337   PMID:10398585   PMID:10403822  
PMID:10491318   PMID:10506147   PMID:10512750   PMID:10549165   PMID:10549869   PMID:10561590   PMID:10641798   PMID:10679299   PMID:10747897   PMID:10753899   PMID:10764587   PMID:10799509  
PMID:10931861   PMID:10944435   PMID:10951572   PMID:10964683   PMID:10984616   PMID:11062072   PMID:11092945   PMID:11239457   PMID:11298324   PMID:11378439   PMID:11396975   PMID:11485312  
PMID:11535139   PMID:11546811   PMID:11574463   PMID:11583622   PMID:11709713   PMID:11710515   PMID:11713579   PMID:11827166   PMID:11827167   PMID:11827168   PMID:11827171   PMID:11827172  
PMID:11827174   PMID:11827176   PMID:11827177   PMID:11827178   PMID:11861906   PMID:11883897   PMID:11940573   PMID:11972058   PMID:11984006   PMID:12037680   PMID:12102635   PMID:12145206  
PMID:12220519   PMID:12393879   PMID:12432063   PMID:12470599   PMID:12477932   PMID:12511551   PMID:12527891   PMID:12591939   PMID:12628923   PMID:12748192   PMID:12769847   PMID:12804768  
PMID:12901717   PMID:12902976   PMID:12954211   PMID:14574404   PMID:14634006   PMID:14645218   PMID:14656967   PMID:14667819   PMID:14744259   PMID:15218032   PMID:15225637   PMID:15485924  
1 to 10 of 33 rows



CSNK2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,666,080 - 31,670,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,665,227 - 31,670,343 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,633,857 - 31,637,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,741,636 - 31,745,822 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,741,635 - 31,745,822NCBI
Celera633,231,878 - 33,236,064 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,419,882 - 31,424,068 (+)NCBIHuRef
CHM1_1631,635,793 - 31,639,979 (+)NCBICHM1_1
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBIT2T-CHM13v2.0
Csnk2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,335,171 - 35,341,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,335,172 - 35,341,029 (-)EnsemblGRCm39 Ensembl
GRCm381735,116,195 - 35,122,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,116,196 - 35,122,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,253,140 - 35,258,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,724,251 - 34,729,503 (-)NCBIMGSCv36mm8
Celera1738,213,147 - 38,218,397 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Csnk2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,704,833 - 3,709,999 (+)NCBIGRCr8
mRatBN7.2203,700,363 - 3,705,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,698,733 - 3,707,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,399,893 - 4,404,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,761,951 - 3,766,375 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,299,839 - 4,304,262 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,108,692 - 5,113,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,106,890 - 5,113,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,181,951 - 7,186,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,764,565 - 3,768,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,764,954 - 3,769,209 (+)NCBI
Celera204,320,311 - 4,324,731 (-)NCBICelera
Cytogenetic Map20p12NCBI
Csnk2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437210,838 - 219,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437210,541 - 215,725 (+)NCBIChiLan1.0ChiLan1.0
CSNK2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,143,115 - 46,147,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,104,623 - 42,108,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,327,250 - 31,331,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,216,283 - 32,221,131 (+)NCBIpanpan1.1PanPan1.1panPan2
CSNK2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,149,467 - 1,154,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,149,548 - 1,154,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,285,676 - 1,290,594 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,294,469 - 1,299,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,294,519 - 1,301,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,153,768 - 1,158,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,221,041 - 1,225,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,288,118 - 1,293,071 (+)NCBIUU_Cfam_GSD_1.0
Csnk2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,698,801 - 35,703,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,857,596 - 1,862,002 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,857,596 - 1,862,551 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,786,717 - 23,788,302 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl723,780,210 - 23,792,502 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,781,194 - 23,787,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,464,062 - 27,471,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,354,520 - 40,359,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,352,367 - 40,358,401 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,577,195 - 31,581,146 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,533,134 - 24,538,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CSNK2B
141 total Variants

1 to 10 of 165 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001320.7(CSNK2B):c.27del (p.Ser8_Trp9insTer) deletion not provided [RCV000519863] Chr6:31666857 [GRCh38]
Chr6:31634634 [GRCh37]
Chr6:6p21.33
pathogenic
NM_001320.7(CSNK2B):c.494A>G (p.His165Arg) single nucleotide variant Poirier-Bienvenu neurodevelopmental syndrome [RCV002246284]|See cases [RCV001291643]|not provided [RCV004584874] Chr6:31669445 [GRCh38]
Chr6:31637222 [GRCh37]
Chr6:6p21.33
pathogenic|likely pathogenic
NM_001320.7(CSNK2B):c.292-2A>C single nucleotide variant Poirier-Bienvenu neurodevelopmental syndrome [RCV001331966] Chr6:31669095 [GRCh38]
Chr6:31636872 [GRCh37]
Chr6:6p21.33
pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
NM_001320.7(CSNK2B):c.139C>T (p.Arg47Ter) single nucleotide variant CSNK2B-related disorder [RCV003942606]|Inborn genetic diseases [RCV001267434]|Poirier-Bienvenu neurodevelopmental syndrome [RCV002468581]|not provided [RCV001281589] Chr6:31667934 [GRCh38]
Chr6:31635711 [GRCh37]
Chr6:6p21.33
pathogenic|uncertain significance
NM_001320.7(CSNK2B):c.73-2A>G single nucleotide variant Inborn genetic diseases [RCV000624000]|Poirier-Bienvenu neurodevelopmental syndrome [RCV004797842] Chr6:31667866 [GRCh38]
Chr6:31635643 [GRCh37]
Chr6:6p21.33
pathogenic|likely pathogenic
NM_001320.7(CSNK2B):c.94G>A (p.Asp32Asn) single nucleotide variant CSNK2B-related disorder [RCV003411469]|Inborn genetic diseases [RCV000624714]|Poirier-Bienvenu neurodevelopmental syndrome [RCV003139949]|Seizure [RCV002221564]|not provided [RCV001860419] Chr6:31667889 [GRCh38]
Chr6:31635666 [GRCh37]
Chr6:6p21.33
pathogenic|likely pathogenic|uncertain significance|no classifications from unflagged records
NM_001320.7(CSNK2B):c.105dup (p.Leu36fs) duplication not provided [RCV000598578] Chr6:31667899..31667900 [GRCh38]
Chr6:31635676..31635677 [GRCh37]
Chr6:6p21.33
pathogenic
NM_001320.7(CSNK2B):c.2T>A (p.Met1Lys) single nucleotide variant not provided [RCV000681657] Chr6:31666833 [GRCh38]
Chr6:31634610 [GRCh37]
Chr6:6p21.33
likely pathogenic
NM_001320.7(CSNK2B):c.181G>T (p.Glu61Ter) single nucleotide variant not provided [RCV000681658] Chr6:31668544 [GRCh38]
Chr6:31636321 [GRCh37]
Chr6:6p21.33
likely pathogenic
1 to 10 of 165 rows

Predicted Target Of
Summary Value
Count of predictions:3426
Count of miRNA genes:984
Interacting mature miRNAs:1190
Transcripts:ENST00000375865, ENST00000375866, ENST00000375880, ENST00000375882, ENST00000375885, ENST00000409691, ENST00000465481, ENST00000468255, ENST00000475875, ENST00000481269
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597428026GWAS1524100_HInguinal hernia QTL GWAS1524100 (human)3e-10Inguinal hernia63166896531668966Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597357955GWAS1454029_Hcutaneous lupus erythematosus QTL GWAS1454029 (human)3e-14cutaneous lupus erythematosus63166896531668966Human
597400290GWAS1496364_Hsystemic lupus erythematosus QTL GWAS1496364 (human)8e-08systemic lupus erythematosus63166896531668966Human
597399536GWAS1495610_HBMI-adjusted hip circumference QTL GWAS1495610 (human)4e-12BMI-adjusted hip circumferencehip circumference (CMO:0000014)63166816631668167Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human

1 to 10 of 12 rows
G54110  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,637,713 - 31,637,844UniSTSGRCh37
Build 36631,745,692 - 31,745,823RGDNCBI36
Celera633,235,934 - 33,236,065RGD
Cytogenetic Map6p21.3UniSTS
HuRef631,423,938 - 31,424,069UniSTS
G54062  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,637,669 - 31,637,815UniSTSGRCh37
Build 36631,745,648 - 31,745,794RGDNCBI36
Celera633,235,890 - 33,236,036RGD
Cytogenetic Map6p21.3UniSTS
HuRef631,423,894 - 31,424,040UniSTS
CSNK2B  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,637,619 - 31,637,817UniSTSGRCh37
Build 36631,745,598 - 31,745,796RGDNCBI36
Celera633,235,840 - 33,236,038RGD
HuRef631,423,844 - 31,424,042UniSTS
RH16232  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,632,110 - 31,632,238UniSTSGRCh37
Build 36631,740,089 - 31,740,217RGDNCBI36
Celera633,230,331 - 33,230,459RGD
Cytogenetic Map6p21.3UniSTS
HuRef631,418,335 - 31,418,463UniSTS
GeneMap99-GB4 RH Map6145.45UniSTS
MARC_3347-3348:991937077:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,637,116 - 31,637,637UniSTSGRCh37
Build 36631,745,095 - 31,745,616RGDNCBI36
Celera633,235,337 - 33,235,858RGD
HuRef631,423,341 - 31,423,862UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2630 2790 2291 5422 1888 2819 12 743 2487 587 2570 8266 7067 106 3888 2 1020 2008 1953 187 2


1 to 30 of 42 rows
RefSeq Transcripts NM_001282385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF129756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL805934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY113186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ643177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX511262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR354443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB570461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ314868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 42 rows

Ensembl Acc Id: ENST00000375865   ⟹   ENSP00000365025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,292 - 31,670,070 (+)Ensembl
Ensembl Acc Id: ENST00000375866   ⟹   ENSP00000365026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,355 - 31,670,070 (+)Ensembl
Ensembl Acc Id: ENST00000375880   ⟹   ENSP00000365040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,102 - 31,673,546 (+)Ensembl
Ensembl Acc Id: ENST00000375882   ⟹   ENSP00000365042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,080 - 31,670,067 (+)Ensembl
Ensembl Acc Id: ENST00000375885   ⟹   ENSP00000365046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,665,236 - 31,670,070 (+)Ensembl
Ensembl Acc Id: ENST00000409691   ⟹   ENSP00000387322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,669,118 - 31,673,546 (+)Ensembl
Ensembl Acc Id: ENST00000465481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,087 - 31,668,830 (+)Ensembl
Ensembl Acc Id: ENST00000468255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,081 - 31,670,343 (+)Ensembl
Ensembl Acc Id: ENST00000475875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,101 - 31,670,067 (+)Ensembl
Ensembl Acc Id: ENST00000481269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,094 - 31,669,464 (+)Ensembl
Ensembl Acc Id: ENST00000617558   ⟹   ENSP00000483989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,666,820 - 31,672,346 (+)Ensembl
Ensembl Acc Id: ENST00000677388   ⟹   ENSP00000504290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,665,227 - 31,670,067 (+)Ensembl
Ensembl Acc Id: ENST00000677536   ⟹   ENSP00000502967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,665,234 - 31,670,074 (+)Ensembl
Ensembl Acc Id: ENST00000677758   ⟹   ENSP00000504242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,665,234 - 31,670,066 (+)Ensembl
RefSeq Acc Id: NM_001282385   ⟹   NP_001269314
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,666,080 - 31,670,067 (+)NCBI
HuRef631,419,882 - 31,424,072 (+)NCBI
CHM1_1631,635,793 - 31,639,983 (+)NCBI
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320   ⟹   NP_001311
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,666,080 - 31,670,067 (+)NCBI
GRCh37631,632,995 - 31,637,844 (+)NCBI
Build 36631,741,636 - 31,745,822 (+)NCBI Archive
HuRef631,419,882 - 31,424,072 (+)NCBI
CHM1_1631,635,793 - 31,639,983 (+)NCBI
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBI
Sequence:
1 to 30 of 54 rows
Protein RefSeqs NP_001269314 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD18081 (Get FASTA)   NCBI Sequence Viewer  
  AAI12018 (Get FASTA)   NCBI Sequence Viewer  
  AAI12020 (Get FASTA)   NCBI Sequence Viewer  
  AAM50092 (Get FASTA)   NCBI Sequence Viewer  
  ABC40727 (Get FASTA)   NCBI Sequence Viewer  
  AQY76763 (Get FASTA)   NCBI Sequence Viewer  
  AQY76764 (Get FASTA)   NCBI Sequence Viewer  
  BAB63386 (Get FASTA)   NCBI Sequence Viewer  
  BAG34801 (Get FASTA)   NCBI Sequence Viewer  
  BAG62356 (Get FASTA)   NCBI Sequence Viewer  
  CAA34379 (Get FASTA)   NCBI Sequence Viewer  
  CAA34811 (Get FASTA)   NCBI Sequence Viewer  
  CAA40442 (Get FASTA)   NCBI Sequence Viewer  
  CAG46500 (Get FASTA)   NCBI Sequence Viewer  
  CCI79680 (Get FASTA)   NCBI Sequence Viewer  
  CCI79681 (Get FASTA)   NCBI Sequence Viewer  
  CCI79682 (Get FASTA)   NCBI Sequence Viewer  
  CCI79683 (Get FASTA)   NCBI Sequence Viewer  
  CCI79684 (Get FASTA)   NCBI Sequence Viewer  
  CCI79690 (Get FASTA)   NCBI Sequence Viewer  
  CCI79691 (Get FASTA)   NCBI Sequence Viewer  
  CCI79692 (Get FASTA)   NCBI Sequence Viewer  
  CCI79695 (Get FASTA)   NCBI Sequence Viewer  
  CCI79696 (Get FASTA)   NCBI Sequence Viewer  
  EAX03472 (Get FASTA)   NCBI Sequence Viewer  
  EAX03473 (Get FASTA)   NCBI Sequence Viewer  
  EAX03474 (Get FASTA)   NCBI Sequence Viewer  
  EAX03475 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 54 rows
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_001311   ⟸   NM_001320
- Peptide Label: isoform 1
- UniProtKB: P13862 (UniProtKB/Swiss-Prot),   P07312 (UniProtKB/Swiss-Prot),   B0UXA9 (UniProtKB/Swiss-Prot),   Q4VX47 (UniProtKB/Swiss-Prot),   P67870 (UniProtKB/Swiss-Prot),   N0E4C7 (UniProtKB/TrEMBL),   Q5SRQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269314   ⟸   NM_001282385
- Peptide Label: isoform 2
- UniProtKB: A0A1U9X7J2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000365025   ⟸   ENST00000375865
Ensembl Acc Id: ENSP00000365026   ⟸   ENST00000375866
Ensembl Acc Id: ENSP00000365042   ⟸   ENST00000375882

Name Modeler Protein Id AA Range Protein Structure
AF-P67870-F1-model_v2 AlphaFold P67870 1-215 view protein structure

RGD ID:6872568
Promoter ID:EPDNEW_H9449
Type:initiation region
Name:CSNK2B_3
Description:casein kinase 2 beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9450  EPDNEW_H9454  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,665,838 - 31,665,898EPDNEW
RGD ID:6872570
Promoter ID:EPDNEW_H9450
Type:initiation region
Name:CSNK2B_1
Description:casein kinase 2 beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9449  EPDNEW_H9454  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,666,087 - 31,666,147EPDNEW
RGD ID:6872578
Promoter ID:EPDNEW_H9454
Type:initiation region
Name:CSNK2B_2
Description:casein kinase 2 beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9449  EPDNEW_H9450  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,668,621 - 31,668,681EPDNEW
RGD ID:6804150
Promoter ID:HG_KWN:52959
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000375865,   ENST00000375866,   ENST00000375872,   ENST00000375873,   ENST00000375875,   ENST00000375885,   OTTHUMT00000076063,   OTTHUMT00000076065,   OTTHUMT00000076069,   OTTHUMT00000144422,   UC003NVS.1,   UC010JSZ.1,   UC010JTA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,740,116 - 31,741,512 (+)MPROMDB
RGD ID:6852422
Promoter ID:EP74020
Type:initiation region
Name:HS_CSNK2B
Description:Casein kinase 2, beta polypeptide.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,741,594 - 31,741,654EPD
RGD ID:6804152
Promoter ID:HG_KWN:52961
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000409525,   OTTHUMT00000124389,   OTTHUMT00000335081
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,746,326 - 31,746,867 (+)MPROMDB


1 to 40 of 88 rows
Database
Acc Id
Source(s)
COSMIC CSNK2B COSMIC
Ensembl Genes ENSG00000204435 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000206406 UniProtKB/Swiss-Prot
  ENSG00000224398 UniProtKB/Swiss-Prot
  ENSG00000224774 UniProtKB/Swiss-Prot
  ENSG00000228875 UniProtKB/Swiss-Prot
  ENSG00000230700 UniProtKB/Swiss-Prot
  ENSG00000232960 UniProtKB/Swiss-Prot
  ENSG00000263020 Ensembl
Ensembl Transcript ENST00000375865.6 UniProtKB/Swiss-Prot
  ENST00000375866.2 UniProtKB/Swiss-Prot
  ENST00000375882 ENTREZGENE
  ENST00000375882.7 UniProtKB/Swiss-Prot
  ENST00000383427.6 UniProtKB/Swiss-Prot
  ENST00000383433.8 UniProtKB/Swiss-Prot
  ENST00000400110.5 UniProtKB/Swiss-Prot
  ENST00000412802.5 UniProtKB/Swiss-Prot
  ENST00000418230.5 UniProtKB/Swiss-Prot
  ENST00000422567.6 UniProtKB/Swiss-Prot
  ENST00000429633.5 UniProtKB/Swiss-Prot
  ENST00000431476.5 UniProtKB/Swiss-Prot
  ENST00000436169.5 UniProtKB/Swiss-Prot
  ENST00000443673.6 UniProtKB/Swiss-Prot
  ENST00000448596.1 UniProtKB/Swiss-Prot
  ENST00000451917.6 UniProtKB/Swiss-Prot
  ENST00000452985.6 UniProtKB/Swiss-Prot
  ENST00000453234.5 UniProtKB/Swiss-Prot
  ENST00000454382.6 UniProtKB/Swiss-Prot
  ENST00000454511.5 UniProtKB/Swiss-Prot
  ENST00000455161.1 UniProtKB/Swiss-Prot
  ENST00000458330.5 UniProtKB/Swiss-Prot
  ENST00000677536 ENTREZGENE
Gene3D-CATH 1.10.1820.10 UniProtKB/Swiss-Prot
  2.20.25.20 UniProtKB/Swiss-Prot
GTEx ENSG00000204435 GTEx
  ENSG00000206406 GTEx
  ENSG00000224398 GTEx
  ENSG00000224774 GTEx
  ENSG00000228875 GTEx
  ENSG00000230700 GTEx
1 to 40 of 88 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 CSNK2B  casein kinase 2 beta  CSNK2B  casein kinase 2, beta polypeptide  Symbol and/or name change 5135510 APPROVED