Csnk2b (casein kinase 2 beta) - Rat Genome Database

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Gene: Csnk2b (casein kinase 2 beta) Chinchilla lanigera
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Symbol: Csnk2b
Name: casein kinase 2 beta
RGD ID: 8932508
Description: ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); endothelial tube morphogenesis (ortholog); liver regeneration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; mitochondrial autophagy pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder (ortholog); FOUND IN cell projection (ortholog); chromatin (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: casein kinase 2, beta polypeptide; casein kinase II subunit beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437210,838 - 219,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437210,541 - 215,725 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csnk2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437210,838 - 219,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437210,541 - 215,725 (+)NCBIChiLan1.0ChiLan1.0
CSNK2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,666,080 - 31,670,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,665,227 - 31,670,343 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,633,857 - 31,637,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,741,636 - 31,745,822 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,741,635 - 31,745,822NCBI
Celera633,231,878 - 33,236,064 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,419,882 - 31,424,068 (+)NCBIHuRef
CHM1_1631,635,793 - 31,639,979 (+)NCBICHM1_1
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBIT2T-CHM13v2.0
Csnk2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,335,171 - 35,341,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,335,172 - 35,341,029 (-)EnsemblGRCm39 Ensembl
GRCm381735,116,195 - 35,122,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,116,196 - 35,122,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,253,140 - 35,258,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,724,251 - 34,729,503 (-)NCBIMGSCv36mm8
Celera1738,213,147 - 38,218,397 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Csnk2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,704,833 - 3,709,999 (+)NCBIGRCr8
mRatBN7.2203,700,363 - 3,705,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,698,733 - 3,707,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,399,893 - 4,404,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,761,951 - 3,766,375 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,299,839 - 4,304,262 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,108,692 - 5,113,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,106,890 - 5,113,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,181,951 - 7,186,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,764,565 - 3,768,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,764,954 - 3,769,209 (+)NCBI
Celera204,320,311 - 4,324,731 (-)NCBICelera
Cytogenetic Map20p12NCBI
CSNK2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,143,115 - 46,147,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,104,623 - 42,108,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,327,250 - 31,331,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,216,283 - 32,221,131 (+)NCBIpanpan1.1PanPan1.1panPan2
CSNK2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,149,467 - 1,154,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,149,548 - 1,154,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,285,676 - 1,290,594 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,294,469 - 1,299,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,294,519 - 1,301,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,153,768 - 1,158,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,221,041 - 1,225,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,288,118 - 1,293,071 (+)NCBIUU_Cfam_GSD_1.0
Csnk2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,698,801 - 35,703,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,857,596 - 1,862,002 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,857,596 - 1,862,551 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,786,805 - 23,787,808 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl723,780,362 - 23,788,678 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,781,194 - 23,787,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,464,062 - 27,471,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,354,520 - 40,359,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,352,367 - 40,358,401 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,577,195 - 31,581,146 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,533,134 - 24,538,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000017926   ⟹   ENSCLAP00000017751
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955437210,838 - 219,694 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017927   ⟹   ENSCLAP00000017752
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955437210,996 - 219,694 (+)Ensembl
RefSeq Acc Id: XM_005389349   ⟹   XP_005389406
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437210,541 - 215,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389350   ⟹   XP_005389407
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437211,477 - 215,725 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389406 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389407 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017751
  ENSCLAP00000017751.1
  ENSCLAP00000017752
  ENSCLAP00000017752.1
RefSeq Acc Id: XP_005389406   ⟸   XM_005389349
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VMB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389407   ⟸   XM_005389350
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017752   ⟸   ENSCLAT00000017927
RefSeq Acc Id: ENSCLAP00000017751   ⟸   ENSCLAT00000017926


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017926 ENTREZGENE
  ENSCLAT00000017926.1 UniProtKB/TrEMBL
  ENSCLAT00000017927 ENTREZGENE
  ENSCLAT00000017927.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1820.10 UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/TrEMBL
InterPro Casein_kin_II_reg-sub_N UniProtKB/TrEMBL
  Casein_kinase_II_beta-like UniProtKB/TrEMBL
  Casein_kinase_II_reg-sub UniProtKB/TrEMBL
NCBI Gene Csnk2b ENTREZGENE
PANTHER CASEIN KINASE II SUBUNIT BETA UniProtKB/TrEMBL
  PTHR11740 UniProtKB/TrEMBL
Pfam CK_II_beta UniProtKB/TrEMBL
PRINTS CASNKINASEII UniProtKB/TrEMBL
PROSITE CK2_BETA UniProtKB/TrEMBL
SMART CK_II_beta UniProtKB/TrEMBL
Superfamily-SCOP SSF57798 UniProtKB/TrEMBL
UniProt A0A8C2VMB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YRE8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Csnk2b  casein kinase 2 beta    casein kinase 2, beta polypeptide  Symbol and/or name change 5135510 APPROVED