Csnk2b (casein kinase 2, beta polypeptide) - Rat Genome Database

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Gene: Csnk2b (casein kinase 2, beta polypeptide) Mus musculus
Analyze
Symbol: Csnk2b
Name: casein kinase 2, beta polypeptide
RGD ID: 1624107
MGI Page MGI
Description: Predicted to enable several functions, including RNA polymerase II-specific DNA-binding transcription factor binding activity; chromatin binding activity; and identical protein binding activity. Predicted to be involved in several processes, including adiponectin-activated signaling pathway; positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and symbiont-mediated disruption of host cell PML body. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in cell projection and nuclear matrix. Predicted to be part of PcG protein complex; chromatin; and protein kinase CK2 complex. Predicted to be active in PML body and cytoplasm. Predicted to colocalize with plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; nasal epithelium; and skin. Orthologous to human CSNK2B (casein kinase 2 beta).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: casein kinase II subunit beta; casein kinase II, beta subunit; chimera Csnk2b-Ly6g5b splicing isoform 1108; chimera Csnk2b-Ly6g5b splicing isoform 979; CK II beta; Csnk2b splicing isoform 670; Csnk2b splicing isoform 780; Csnk2b-Ly6g5b; phosvitin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,335,171 - 35,341,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,335,172 - 35,341,029 (-)EnsemblGRCm39 Ensembl
GRCm381735,116,195 - 35,122,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,116,196 - 35,122,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,253,140 - 35,258,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,724,251 - 34,729,503 (-)NCBIMGSCv36mm8
Celera1738,213,147 - 38,218,397 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-aza-2'-deoxycytidine  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
ATP  (ISO)
atrazine  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
capsaicin  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (ISO)
chrysin 5,7-dimethyl ether  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
crocidolite asbestos  (EXP)
cycloheximide  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
emodin  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (ISO)
omeprazole  (ISO)
paracetamol  (EXP)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
Propiverine  (ISO)
pyrogallol  (EXP)
quercetin  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
thioacetamide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal double-strand DNA break repair  (IAGP)
abnormal miniature endplate potential  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal protein level  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal spermatid morphology  (IAGP)
abnormal spermatocyte morphology  (IAGP)
abnormal trophoblast giant cell morphology  (IAGP)
absent inner cell mass  (IAGP)
absent primary ovarian follicles  (IAGP)
absent primordial ovarian follicles  (IAGP)
absent secondary ovarian follicles  (IAGP)
absent tertiary ovarian follicles  (IAGP)
arrest of spermatogenesis  (IAGP)
azoospermia  (IAGP)
decreased body weight  (IAGP)
decreased embryo size  (IAGP)
decreased grip strength  (IAGP)
decreased male germ cell number  (IAGP)
decreased oocyte number  (IAGP)
decreased ovary weight  (IAGP)
decreased primordial ovarian follicle number  (IAGP)
decreased secondary ovarian follicle number  (IAGP)
decreased tertiary ovarian follicle number  (IAGP)
decreased testis weight  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
female infertility  (IAGP)
increased atretic ovarian follicle number  (IAGP)
increased granulosa cell apoptosis  (IAGP)
increased male germ cell apoptosis  (IAGP)
increased testis apoptosis  (IAGP)
male infertility  (IAGP)
ovary atrophy  (IAGP)
premature ovarian failure  (IAGP)
small seminiferous tubules  (IAGP)
small testis  (IAGP)
testicular atrophy  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Morphological changes and expression of protein kinase CK2 beta subunit in the microglia after hypoglossal nerve transection. Gesase AP and Kiyama H, J Neurocytol. 2000 Jan;29(1):61-6.
2. Expression of protein kinase CK2 in astroglial cells of normal and neovascularized retina. Kramerov AA, etal., Am J Pathol. 2006 May;168(5):1722-36.
3. Quantitative proteome profiling of human myoma and myometrium tissue reveals kinase expression signatures with potential for therapeutic intervention. Lemeer S, etal., Proteomics. 2015 Jan;15(2-3):356-64. doi: 10.1002/pmic.201400213. Epub 2014 Dec 17.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Selective removal of mitochondria via mitophagy: distinct pathways for different mitochondrial stresses. Wei H, etal., Biochim Biophys Acta. 2015 Oct;1853(10 Pt B):2784-90. doi: 10.1016/j.bbamcr.2015.03.013. Epub 2015 Apr 1.
9. Differential gene expression in infarct scar and viable myocardium from rat heart following coronary ligation. Xu YJ, etal., J Cell Mol Med. 2004 Jan-Mar;8(1):85-92.
Additional References at PubMed
PMID:2015307   PMID:2362816   PMID:8184654   PMID:8530080   PMID:9196000   PMID:9507200   PMID:10349636   PMID:10469308   PMID:10806215   PMID:10871872   PMID:10922068   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11722849   PMID:11827178   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12529396   PMID:12849985   PMID:14610273   PMID:15284227   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16818610   PMID:16895915   PMID:17296600   PMID:17954558   PMID:18287559   PMID:18559419   PMID:18594950   PMID:19299560   PMID:19542537   PMID:19666609  
PMID:20347968   PMID:20368287   PMID:20368359   PMID:20682268   PMID:20849816   PMID:21267068   PMID:21873635   PMID:22716292   PMID:23058914   PMID:23521802   PMID:24803591   PMID:24952961  
PMID:25599562   PMID:25737280   PMID:26108355   PMID:26562092   PMID:27034005   PMID:27352031   PMID:27507650   PMID:28928125   PMID:29165030   PMID:29483533   PMID:29725001   PMID:30196744  
PMID:30550785   PMID:30834696   PMID:31755150   PMID:31779225   PMID:32325033   PMID:32385263   PMID:34321999   PMID:34637754   PMID:37302538  


Genomics

Comparative Map Data
Csnk2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,335,171 - 35,341,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,335,172 - 35,341,029 (-)EnsemblGRCm39 Ensembl
GRCm381735,116,195 - 35,122,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,116,196 - 35,122,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,253,140 - 35,258,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,724,251 - 34,729,503 (-)NCBIMGSCv36mm8
Celera1738,213,147 - 38,218,397 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
CSNK2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,666,080 - 31,670,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,665,227 - 31,670,343 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,633,857 - 31,637,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,741,636 - 31,745,822 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,741,635 - 31,745,822NCBI
Celera633,231,878 - 33,236,064 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,419,882 - 31,424,068 (+)NCBIHuRef
CHM1_1631,635,793 - 31,639,979 (+)NCBICHM1_1
T2T-CHM13v2.0631,519,114 - 31,523,101 (+)NCBIT2T-CHM13v2.0
Csnk2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,704,833 - 3,709,999 (+)NCBIGRCr8
mRatBN7.2203,700,363 - 3,705,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,698,733 - 3,707,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,399,893 - 4,404,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,761,951 - 3,766,375 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,299,839 - 4,304,262 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,108,692 - 5,113,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,106,890 - 5,113,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,181,951 - 7,186,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,764,565 - 3,768,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,764,954 - 3,769,209 (+)NCBI
Celera204,320,311 - 4,324,731 (-)NCBICelera
Cytogenetic Map20p12NCBI
Csnk2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437210,838 - 219,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437210,541 - 215,725 (+)NCBIChiLan1.0ChiLan1.0
CSNK2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,143,115 - 46,147,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,104,623 - 42,108,622 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,327,250 - 31,331,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,216,283 - 32,221,131 (+)NCBIpanpan1.1PanPan1.1panPan2
CSNK2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,149,467 - 1,154,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,149,548 - 1,154,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,285,676 - 1,290,594 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,294,469 - 1,299,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,294,519 - 1,301,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,153,768 - 1,158,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,221,041 - 1,225,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,288,118 - 1,293,071 (+)NCBIUU_Cfam_GSD_1.0
Csnk2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,698,801 - 35,703,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,857,596 - 1,862,002 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,857,596 - 1,862,551 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,786,805 - 23,787,808 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl723,780,362 - 23,788,678 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,781,194 - 23,787,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,464,062 - 27,471,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,354,520 - 40,359,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,352,367 - 40,358,401 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,577,195 - 31,581,146 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,533,134 - 24,538,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1401
Count of miRNA genes:512
Interacting mature miRNAs:603
Transcripts:ENSMUST00000025246, ENSMUST00000172765, ENSMUST00000173114, ENSMUST00000173189, ENSMUST00000173633, ENSMUST00000173915, ENSMUST00000174024, ENSMUST00000174306, ENSMUST00000174779, ENSMUST00000174855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173381972136250180Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse

Markers in Region
RH129972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,116,226 - 35,116,418UniSTSGRCm38
MGSCv371735,253,171 - 35,253,363UniSTSGRCm37
Celera1738,213,178 - 38,213,370UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.02UniSTS
RH137048  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,116,225 - 35,116,413UniSTSGRCm38
MGSCv371735,253,170 - 35,253,358UniSTSGRCm37
Celera1738,213,177 - 38,213,365UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.02UniSTS
Csnk2b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,116,224 - 35,116,328UniSTSGRCm38
MGSCv371735,253,169 - 35,253,273UniSTSGRCm37
Celera1738,213,176 - 38,213,280UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.02UniSTS
MARC_3347-3348:991937077:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,116,401 - 35,117,865UniSTSGRCm38
MGSCv371735,253,346 - 35,254,810UniSTSGRCm37
Cytogenetic Map17B1UniSTS
cM Map1719.02UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001303445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001303446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001303476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF109719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU406961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HE864437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X80685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000025246   ⟹   ENSMUSP00000025246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,335,174 - 35,340,262 (-)Ensembl
GRCm38.p6 Ensembl1735,116,198 - 35,121,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172765   ⟹   ENSMUSP00000134523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,336,672 - 35,341,029 (-)Ensembl
GRCm38.p6 Ensembl1735,117,696 - 35,122,053 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173114   ⟹   ENSMUSP00000134218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,335,172 - 35,340,405 (-)Ensembl
GRCm38.p6 Ensembl1735,116,196 - 35,121,429 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,336,671 - 35,337,757 (-)Ensembl
GRCm38.p6 Ensembl1735,117,695 - 35,118,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173633   ⟹   ENSMUSP00000133826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,335,218 - 35,337,048 (-)Ensembl
GRCm38.p6 Ensembl1735,116,242 - 35,118,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173915   ⟹   ENSMUSP00000133425
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,338,730 - 35,340,974 (-)Ensembl
GRCm38.p6 Ensembl1735,119,754 - 35,121,998 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174024   ⟹   ENSMUSP00000134673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,335,176 - 35,340,149 (-)Ensembl
GRCm38.p6 Ensembl1735,116,200 - 35,121,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174306   ⟹   ENSMUSP00000134413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,336,971 - 35,340,006 (-)Ensembl
GRCm38.p6 Ensembl1735,117,995 - 35,121,030 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174779   ⟹   ENSMUSP00000133684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,335,174 - 35,338,751 (-)Ensembl
GRCm38.p6 Ensembl1735,116,198 - 35,119,775 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,339,494 - 35,340,412 (-)Ensembl
GRCm38.p6 Ensembl1735,120,518 - 35,121,436 (-)Ensembl
RefSeq Acc Id: NM_001303445   ⟹   NP_001290374
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,335,171 - 35,340,405 (-)NCBI
GRCm381735,116,195 - 35,121,429 (-)NCBI
Celera1738,213,147 - 38,219,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001303446   ⟹   NP_001290375
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,335,171 - 35,341,029 (-)NCBI
GRCm381735,116,195 - 35,122,053 (-)NCBI
Celera1738,213,147 - 38,219,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001303476   ⟹   NP_001290405
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,335,171 - 35,340,268 (-)NCBI
GRCm381735,116,195 - 35,121,292 (-)NCBI
Celera1738,213,147 - 38,219,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009975   ⟹   NP_034105
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,335,171 - 35,340,268 (-)NCBI
GRCm381735,116,195 - 35,121,292 (-)NCBI
MGSCv371735,253,140 - 35,258,392 (-)RGD
Celera1738,213,147 - 38,219,003 (-)NCBI
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001290374 (Get FASTA)   NCBI Sequence Viewer  
  NP_001290375 (Get FASTA)   NCBI Sequence Viewer  
  NP_001290405 (Get FASTA)   NCBI Sequence Viewer  
  NP_034105 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF03911 (Get FASTA)   NCBI Sequence Viewer  
  AAH03775 (Get FASTA)   NCBI Sequence Viewer  
  BAB22445 (Get FASTA)   NCBI Sequence Viewer  
  BAB27147 (Get FASTA)   NCBI Sequence Viewer  
  BAB28193 (Get FASTA)   NCBI Sequence Viewer  
  BAE26962 (Get FASTA)   NCBI Sequence Viewer  
  BAE36328 (Get FASTA)   NCBI Sequence Viewer  
  CAA37132 (Get FASTA)   NCBI Sequence Viewer  
  CAA39857 (Get FASTA)   NCBI Sequence Viewer  
  CAA56700 (Get FASTA)   NCBI Sequence Viewer  
  CCI79672 (Get FASTA)   NCBI Sequence Viewer  
  CCI79673 (Get FASTA)   NCBI Sequence Viewer  
  CCI79674 (Get FASTA)   NCBI Sequence Viewer  
  EDL26657 (Get FASTA)   NCBI Sequence Viewer  
  EDL26658 (Get FASTA)   NCBI Sequence Viewer  
  EDL26659 (Get FASTA)   NCBI Sequence Viewer  
  EDL26660 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025246
  ENSMUSP00000025246.7
  ENSMUSP00000133425.2
  ENSMUSP00000133684.2
  ENSMUSP00000133826.3
  ENSMUSP00000134218
  ENSMUSP00000134218.2
  ENSMUSP00000134413.2
  ENSMUSP00000134523
  ENSMUSP00000134523.3
  ENSMUSP00000134673
  ENSMUSP00000134673.2
GenBank Protein P67871 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034105   ⟸   NM_009975
- Peptide Label: isoform 2
- UniProtKB: Q3TTJ7 (UniProtKB/Swiss-Prot),   P67871 (UniProtKB/Swiss-Prot),   N0E4C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001290375   ⟸   NM_001303446
- Peptide Label: isoform 1
- UniProtKB: N0E4C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001290374   ⟸   NM_001303445
- Peptide Label: isoform 2
- UniProtKB: Q3TTJ7 (UniProtKB/Swiss-Prot),   P67871 (UniProtKB/Swiss-Prot),   N0E4C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001290405   ⟸   NM_001303476
- Peptide Label: isoform 3
- UniProtKB: G3UZX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000134523   ⟸   ENSMUST00000172765
RefSeq Acc Id: ENSMUSP00000133684   ⟸   ENSMUST00000174779
RefSeq Acc Id: ENSMUSP00000134413   ⟸   ENSMUST00000174306
RefSeq Acc Id: ENSMUSP00000134673   ⟸   ENSMUST00000174024
RefSeq Acc Id: ENSMUSP00000133826   ⟸   ENSMUST00000173633
RefSeq Acc Id: ENSMUSP00000134218   ⟸   ENSMUST00000173114
RefSeq Acc Id: ENSMUSP00000133425   ⟸   ENSMUST00000173915
RefSeq Acc Id: ENSMUSP00000025246   ⟸   ENSMUST00000025246

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P67871-F1-model_v2 AlphaFold P67871 1-215 view protein structure

Promoters
RGD ID:13675812
Promoter ID:EPDNEW_M22055
Type:initiation region
Name:Csnk2b_1
Description:Mus musculus casein kinase 2, beta polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22056  EPDNEW_M22058  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381735,121,257 - 35,121,317EPDNEW
RGD ID:13675814
Promoter ID:EPDNEW_M22056
Type:initiation region
Name:Csnk2b_3
Description:Mus musculus casein kinase 2, beta polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22055  EPDNEW_M22058  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381735,121,404 - 35,121,464EPDNEW
RGD ID:13675818
Promoter ID:EPDNEW_M22058
Type:initiation region
Name:Csnk2b_2
Description:Mus musculus casein kinase 2, beta polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22055  EPDNEW_M22056  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381735,122,011 - 35,122,071EPDNEW
RGD ID:6827957
Promoter ID:MM_KWN:23273
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001128597,   NM_009975,   UC008CFU.1,   UC008CFW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361735,258,086 - 35,258,762 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88548 AgrOrtholog
Ensembl Genes ENSMUSG00000024387 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025246 ENTREZGENE
  ENSMUST00000025246.13 UniProtKB/Swiss-Prot
  ENSMUST00000172765 ENTREZGENE
  ENSMUST00000172765.9 UniProtKB/TrEMBL
  ENSMUST00000173114 ENTREZGENE
  ENSMUST00000173114.8 UniProtKB/Swiss-Prot
  ENSMUST00000173633.3 UniProtKB/TrEMBL
  ENSMUST00000173915.3 UniProtKB/TrEMBL
  ENSMUST00000174024 ENTREZGENE
  ENSMUST00000174024.8 UniProtKB/TrEMBL
  ENSMUST00000174306.8 UniProtKB/TrEMBL
  ENSMUST00000174779.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1820.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Casein_kin_II_reg-sub_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Casein_kinase_II_beta-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Casein_kinase_II_reg-sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13001 UniProtKB/Swiss-Prot
MGD MGI:88548 ENTREZGENE
NCBI Gene 13001 ENTREZGENE
PANTHER CASEIN KINASE II SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11740 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CK_II_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csnk2b PhenoGen
PRINTS CASNKINASEII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CK2_BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CK_II_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57798 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CSK2B_MOUSE UniProtKB/Swiss-Prot
  G3UWU5_MOUSE UniProtKB/TrEMBL
  G3UXG7_MOUSE UniProtKB/TrEMBL
  G3UXU2_MOUSE UniProtKB/TrEMBL
  G3UZA4_MOUSE UniProtKB/TrEMBL
  G3UZJ5_MOUSE UniProtKB/TrEMBL
  G3UZX4 ENTREZGENE, UniProtKB/TrEMBL
  N0E462_MOUSE UniProtKB/TrEMBL
  N0E4C0 ENTREZGENE, UniProtKB/TrEMBL
  N0E634_MOUSE UniProtKB/TrEMBL
  P67871 ENTREZGENE
  Q3TTJ7 ENTREZGENE
UniProt Secondary P07312 UniProtKB/Swiss-Prot
  P13862 UniProtKB/Swiss-Prot
  Q3TTJ7 UniProtKB/Swiss-Prot