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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA transcription by RNA polymerase II
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Accession:GO:0042789 term browser browse the term
Definition:The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
Synonyms:exact_synonym: mRNA transcription from Pol II promoter;   mRNA transcription from RNA polymerase II promoter


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mRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 involved_in ISO (MGI:5469743|PMID:23415230) ComplexPortal PMID:23415230 MGI:5469743 NCBI chr15:39,322,303...39,371,565
Ensembl chr15:57,625,425...57,674,250 		JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within_negative_effect		 IEA
ISO		 (PMID:31272455) Ensembl
MGI		 PMID:31272455 GO_REF:0000107 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205 		JBrowse link
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:62,348,245...62,444,428
Ensembl chr2B:179,799,365...179,895,007 		JBrowse link
G ATF4 activating transcription factor 4 involved_in ISO (MGI:3582244|PMID:11106749) UniProt PMID:11106749 MGI:3582244 NCBI chr22:20,426,743...20,428,892
Ensembl chr22:38,248,094...38,249,249 		JBrowse link
G C5AR1 complement C5a receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,293,612...44,310,430
Ensembl chr19:52,950,317...52,966,146 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:94,762,796...94,836,304
Ensembl chr2B:212,891,261...212,958,130 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:22359666)
(PMID:25260930), (PMID:25368121)		 MGI PMID:22359666 PMID:25260930 PMID:25368121 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G EPAS1 endothelial PAS domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:46,403,411...46,492,734
Ensembl chr2A:47,332,308...47,421,560 		JBrowse link
G FLNA filamin A ISO RGD PMID:20167606 RGD:7207405 NCBI chr  X:143,799,088...143,825,282 JBrowse link
G FOXE3 forkhead box E3 involved_in ISO (PMID:27218149) UniProt PMID:27218149 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G HLTF helicase like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:146,054,371...146,111,150
Ensembl chr 3:153,632,319...153,688,951 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in ISO (MGI:5438900|PMID:22633954) BHF-UCL PMID:22633954 MGI:5438900 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894 		JBrowse link
G MED1 mediator complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:24,485,068...24,764,135
Ensembl chr2A:24,733,117...24,859,488 		JBrowse link
G NFKBIZ NFKB inhibitor zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:98,914,957...98,948,467
Ensembl chr 3:105,616,645...105,628,300 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,195,122...47,215,277
Ensembl chr11:47,748,353...47,768,672 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in ISO (PMID:16373399) ComplexPortal PMID:16373399 NCBI chr 3:12,215,322...12,361,669
Ensembl chr 3:12,622,397...12,705,060 		JBrowse link
G RARA retinoic acid receptor alpha involved_in ISO (PMID:1310351) ComplexPortal PMID:1310351 NCBI chr17:16,932,485...16,980,958 JBrowse link
G RXRA retinoid X receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:105,424,046...105,539,241
Ensembl chr 9:134,082,865...134,144,704 		JBrowse link
G S100A10 S100 calcium binding protein A10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:127,341,974...127,353,054
Ensembl chr 1:130,985,312...130,995,130 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:22331133) MGI PMID:22331133 NCBI chr12:35,338,492...35,374,462
Ensembl chr12:36,127,681...36,158,356 		JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22331133) Ensembl
MGI		 PMID:22331133 GO_REF:0000107 NCBI chr17:33,458,196...33,484,643
Ensembl chr17:38,405,794...38,432,045 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26026268) Ensembl
MGI		 PMID:26026268 GO_REF:0000107 NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr11:6,742,862...6,744,260 JBrowse link
G TAF11 TATA-box binding protein associated factor 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,439,369...34,449,501
Ensembl chr 6:35,536,614...35,546,805 		JBrowse link
G TAF12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr 1:27,874,675...27,914,672 JBrowse link
G TAF13 TATA-box binding protein associated factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,441,202...111,452,773
Ensembl chr 1:110,604,654...110,617,808 		JBrowse link
G TAF2 TATA-box binding protein associated factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:116,421,520...116,523,138
Ensembl chr 8:119,170,327...119,271,405 		JBrowse link
G TAF3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr10:7,851,294...8,047,100 JBrowse link
G TAF4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr20:58,341,086...58,431,623 JBrowse link
G TAF4B TATA-box binding protein associated factor 4b involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,480,844...19,648,936
Ensembl chr18:23,089,736...23,254,518 		JBrowse link
G TAF5 TATA-box binding protein associated factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:99,965,537...99,986,955
Ensembl chr10:103,426,334...103,447,046 		JBrowse link
G TAF6 TATA-box binding protein associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,142,646...92,154,951
Ensembl chr 7:105,575,861...105,588,142 		JBrowse link
G TAF7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr 5:136,680,554...136,682,862 JBrowse link
G TAF8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr 6:41,631,483...41,672,988
Ensembl chr 6:42,933,107...42,978,271 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chr 5:44,630,503...44,635,760 JBrowse link
G TBP TATA-box binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,714,214...168,732,744
Ensembl chr 6:173,800,240...173,826,909 		JBrowse link
G TFCP2 transcription factor CP2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:37,580,263...37,659,680
Ensembl chr12:38,486,340...38,563,299 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in ISO (PMID:1310350)
(MGI:6827315|PMID:8910441)		 ComplexPortal PMID:1310350 PMID:8910441 MGI:6827315 NCBI chr17:17,196,459...17,226,263 JBrowse link
G THRB thyroid hormone receptor beta involved_in ISO (PMID:26289479) ComplexPortal PMID:26289479 NCBI chr 3:24,024,025...24,401,024
Ensembl chr 3:24,346,824...24,564,960 		JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192 		JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,085,146...45,114,965
Ensembl chr14:63,354,458...63,359,403 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:32868762) MGI PMID:32868762 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10323
      organic substance metabolic process 9890
        macromolecule metabolic process 8360
          macromolecule biosynthetic process 6495
            gene expression 6067
              DNA-templated transcription 3154
                transcription by RNA polymerase II 2444
                  mRNA transcription by RNA polymerase II 46
Path 2
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10323
      organic substance metabolic process 9890
        organic cyclic compound metabolic process 5559
          nucleobase-containing compound metabolic process 5105
            nucleic acid metabolic process 4608
              nucleic acid biosynthetic process 3305
                RNA biosynthetic process 3182
                  DNA-templated transcription 3154
                    mRNA transcription 51
                      mRNA transcription by RNA polymerase II 46
paths to the root