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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA transcription
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Accession:GO:0009299 term browser browse the term
Definition:The cellular synthesis of messenger RNA (mRNA) from a DNA template.
Synonyms:exact_synonym: cellular mRNA transcription
 broad_synonym: mRNA biosynthesis;   mRNA biosynthetic process;   mRNA synthesis
 alt_id: GO:0061023



show annotations for term's descendants           Sort by:
mRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:23143267) RGD PMID:23143267 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Ereg epiregulin involved_in ISS
ISO
GO_REF:0000024
(PMID:10681561)
UniProt
RGD
PMID:10681561 GO_REF:0000024 NCBI chr14:17,027,287...17,041,062
Ensembl chr14:17,027,287...17,041,062
JBrowse link
G Hipk3 homeodomain interacting protein kinase 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:17210646)
Ensembl
RGD
PMID:17210646 GO_REF:0000107 NCBI chr 3:90,796,980...90,866,701
Ensembl chr 3:90,800,296...90,867,759
JBrowse link
G Irf3 interferon regulatory factor 3 involved_in ISO (PMID:9891032) RGD PMID:9891032 NCBI chr 1:95,479,966...95,484,926
Ensembl chr 1:95,479,821...95,484,935
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:16479015)
GO_REF:0000107
RGD
Ensembl
PMID:16479015 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
mRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO
IEA
(MGI:5469743|PMID:23415230)
GO_REF:0000107
RGD
Ensembl
PMID:23415230 GO_REF:0000107 MGI:5469743 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within_negative_effect ISO (MGI:6406755|PMID:31272455) RGD PMID:31272455 MGI:6406755 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO
IEA
MGI:1857283 (MGI:3807134|PMID:18638549)
GO_REF:0000107
RGD
Ensembl
PMID:18638549 GO_REF:0000107 MGI:3807134 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:3582244|PMID:11106749)
UniProt
RGD
PMID:11106749 GO_REF:0000024 MGI:3582244 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G C5ar1 complement C5a receptor 1 involved_in ISO
ISS
(PMID:22496247)
GO_REF:0000024
RGD
UniProt
PMID:22496247 GO_REF:0000024 NCBI chr 1:76,948,622...76,959,826 JBrowse link
G Creb1 cAMP responsive element binding protein 1 involved_in ISO (PMID:25644539) RGD PMID:25644539 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:2385534 (MGI:5613864|PMID:25368121), (MGI:5616480|PMID:25260930), (MGI:5661140|PMID:22359666) RGD PMID:22359666 PMID:25260930 PMID:25368121 MGI:5613864 MGI:5616480 MGI:5661140 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Epas1 endothelial PAS domain protein 1 involved_in ISO
IEA
(MGI:4359353|PMID:18635823)
GO_REF:0000107
RGD
Ensembl
PMID:18635823 GO_REF:0000107 MGI:4359353 NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228
JBrowse link
G Flna filamin A IMP RGD PMID:20167606 RGD:7207405 NCBI chr  X:152,007,758...152,034,266
Ensembl chr  X:152,007,758...152,031,052
JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO
GO_REF:0000024
(PMID:27218149)
UniProt
RGD
PMID:27218149 GO_REF:0000024 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Hltf helicase-like transcription factor involved_in ISO (MGI:5469743|PMID:23415230) RGD PMID:23415230 MGI:5469743 NCBI chr 2:102,549,724...102,609,492
Ensembl chr 2:102,549,724...102,609,327
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (MGI:5438900|PMID:22633954) RGD PMID:22633954 MGI:5438900 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786
JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5297786|PMID:16723356)
UniProt
RGD
PMID:16723356 GO_REF:0000024 MGI:5297786 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:21326824) RGD PMID:21326824 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO
IEA
(PMID:21326824)
GO_REF:0000107
RGD
Ensembl
PMID:21326824 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:16373399) RGD PMID:16373399 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3525252 (MGI:5792624|PMID:27129283) RGD PMID:27129283 MGI:5792624 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 involved_in ISO (PMID:7744246) RGD PMID:7744246 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:16373399) RGD PMID:16373399 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:1310351) RGD PMID:1310351 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rxra retinoid X receptor alpha involved_in ISO
IEA
(PMID:1309942), (PMID:1310350), (PMID:1310351), (PMID:20171278), (PMID:26289479), (PMID:7744246)
(MGI:50850|PMID:1312497), (MGI:6827315|PMID:8910441)
GO_REF:0000107
RGD
Ensembl
PMID:1309942 PMID:1310350 PMID:1310351 PMID:1312497 PMID:7744246 More... GO_REF:0000107 MGI:50850 MGI:6827315 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G S100a10 S100 calcium binding protein A10 involved_in ISO (MGI:5469743|PMID:23415230) RGD PMID:23415230 MGI:5469743 NCBI chr 2:179,221,012...179,229,659
Ensembl chr 2:179,220,887...179,229,661
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:5426758|PMID:22331133) RGD PMID:22331133 MGI:5426758 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 acts_upstream_of_or_within ISO (MGI:5426758|PMID:22331133) RGD PMID:22331133 MGI:5426758 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5648764|PMID:26026268)
GO_REF:0000107
RGD
Ensembl
PMID:26026268 GO_REF:0000107 MGI:5648764 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IEA
(PMID:17884155)
GO_REF:0000107
RGD
Ensembl
PMID:17884155 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IEA
(PMID:17884155)
GO_REF:0000107
RGD
Ensembl
PMID:17884155 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Tfcp2 transcription factor CP2 involved_in ISO (PMID:11003662) RGD PMID:11003662 NCBI chr 7:131,616,777...131,658,995
Ensembl chr 7:131,616,785...131,658,939
JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO (PMID:1310350)
(MGI:6827315|PMID:8910441)
RGD PMID:1310350 PMID:8910441 MGI:6827315 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
G Thrb thyroid hormone receptor beta involved_in ISO
IEA
(PMID:26289479)
GO_REF:0000107
RGD
Ensembl
PMID:26289479 GO_REF:0000107 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916
JBrowse link
G Vdr vitamin D receptor involved_in ISO
IEA
(PMID:20171278)
GO_REF:0000107
RGD
Ensembl
PMID:20171278 GO_REF:0000107 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:21706167) RGD PMID:21706167 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (MGI:6460489|PMID:32868762) RGD PMID:32868762 MGI:6460489 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      organic substance metabolic process 11224
        macromolecule metabolic process 9474
          macromolecule biosynthetic process 7361
            gene expression 6913
              DNA-templated transcription 3367
                mRNA transcription 51
                  mRNA transcription by RNA polymerase II 46
Path 2
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      organic substance metabolic process 11224
        organic cyclic compound metabolic process 6240
          nucleobase-containing compound metabolic process 5720
            nucleic acid metabolic process 5123
              RNA metabolic process 4527
                RNA biosynthetic process 3391
                  DNA-templated transcription 3367
                    mRNA transcription 51
                      mRNA transcription by RNA polymerase II 46
paths to the root