TAF7 (TATA-box binding protein associated factor 7) - Rat Genome Database

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Gene: TAF7 (TATA-box binding protein associated factor 7) Pan paniscus
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Symbol: TAF7
Name: TATA-box binding protein associated factor 7
RGD ID: 11982649
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); H3K27me3 modified histone binding (ortholog); histone acetyltransferase binding (ortholog); INVOLVED IN DNA-templated transcription initiation (ortholog); intracellular estrogen receptor signaling pathway (ortholog); mRNA transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); MLL1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor TFIID subunit 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,568,526 - 136,570,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,708,078 - 134,710,551 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,680,554 - 136,682,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,794,156 - 142,796,442 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TAF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,568,526 - 136,570,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,708,078 - 134,710,551 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,680,554 - 136,682,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,794,156 - 142,796,442 (-)NCBIpanpan1.1PanPan1.1panPan2
TAF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,318,490 - 141,320,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,259,884 - 141,320,784 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,698,057 - 140,700,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,678,241 - 140,680,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,678,241 - 140,680,535NCBI
Celera5136,774,883 - 136,777,177 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,843,117 - 135,845,411 (-)NCBIHuRef
CHM1_15140,131,262 - 140,133,556 (-)NCBICHM1_1
T2T-CHM13v2.05141,843,793 - 141,846,087 (-)NCBIT2T-CHM13v2.0
Taf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,773,544 - 37,777,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,773,544 - 37,777,257 (-)EnsemblGRCm39 Ensembl
GRCm381837,640,491 - 37,644,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,640,491 - 37,644,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371837,800,145 - 37,803,858 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,766,876 - 37,772,457 (-)NCBIMGSCv36mm8
Celera1838,972,979 - 38,976,692 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.54NCBI
Taf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81829,704,182 - 29,713,382 (-)NCBIGRCr8
mRatBN7.21829,459,937 - 29,462,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,452,943 - 29,462,134 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,564,287 - 29,566,435 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,326,296 - 30,328,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,661,623 - 29,663,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01830,779,149 - 30,781,297 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1830,779,150 - 30,781,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,475,376 - 30,477,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,541,432 - 30,543,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,568,523 - 30,569,630 (-)NCBI
Celera1829,106,903 - 29,109,051 (-)NCBICelera
Cytogenetic Map18p11NCBI
Taf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,453,655 - 12,456,070 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,453,655 - 12,456,070 (+)NCBIChiLan1.0ChiLan1.0
TAF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,295,387 - 36,297,681 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,295,911 - 36,296,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,347,329 - 33,349,652 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,749,118 - 36,751,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,749,126 - 36,751,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,824,087 - 33,826,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,635,069 - 34,637,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,442,754 - 35,445,077 (-)NCBIUU_Cfam_GSD_1.0
Taf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,250,983 - 151,253,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,824,953 - 12,827,214 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,824,928 - 12,827,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,947,343 - 142,952,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,949,271 - 142,952,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,149,391 - 149,151,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,938,202 - 43,940,486 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,938,714 - 43,939,763 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,913,731 - 33,916,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774548,072 - 550,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774548,072 - 550,410 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008954534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008954534   ⟹   XP_008952782
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,568,526 - 136,570,950 (-)NCBI
NHGRI_mPanPan15134,708,078 - 134,710,551 (-)NCBI
Mhudiblu_PPA_v05136,680,554 - 136,682,862 (-)NCBI
PanPan1.15142,794,156 - 142,796,442 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008952782 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008952782   ⟸   XM_008954534
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene TAF7 ENTREZGENE