ONTOLOGY REPORT - ANNOTATIONS
Term: glycosphingolipid biosynthetic process
Accession: GO:0006688
browse the term
Definition: The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.
Synonyms: exact_synonym: glycosphingolipid anabolism; glycosphingolipid biosynthesis; glycosphingolipid formation; glycosphingolipid synthesis
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A3galt2
alpha 1,3-galactosyltransferase 2
acts_upstream_of_or_within involved_in
IDA ISO
MGI:1347344|MGI:3512453 (MGI:5445364|PMID:22875802) PMID:12626403 PMID:10854427
RGD
PMID:22875802 PMID:10854427 PMID:12626403 PMID:10854427
MGI:5445364 , RGD:1299594 , RGD:632674 , RGD:1299594
NCBI chr 5:141,101,329...141,113,760
Ensembl chr 5:141,107,983...141,115,641
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B4galnt1
beta-1,4-N-acetyl-galactosaminyl transferase 1
involved_in
IDA
PMID:1606358
UniProt
PMID:1606358
RGD:21201272
NCBI chr 7:62,988,429...62,996,190
Ensembl chr 7:62,988,930...62,996,190
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B4galt6
beta-1,4-galactosyltransferase 6
involved_in
IDA IBA
PMID:21873635
RGD GO_Central
PMID:9593693 PMID:21873635
RGD:70807 , RGD:13792537
NCBI chr18:11,958,382...12,015,247
Ensembl chr18:11,958,390...12,015,247
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Fut4
fucosyltransferase 4
involved_in
ISO ISS
(PMID:29593094) GO_REF:0000024
RGD UniProt
PMID:29593094
GO_REF:0000024
NCBI chr 8:11,586,721...11,590,682
Ensembl chr 8:11,586,721...11,590,682
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Fut4-ps1
fucosyltransferase 4, pseudogene 1
involved_in
ISO
(PMID:29593094)
RGD
PMID:29593094
NCBI chr 9:1,569,605...1,572,022
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Fut9
fucosyltransferase 9
involved_in
ISS ISO
GO_REF:0000024 (PMID:29593094)
UniProt RGD
PMID:29593094
GO_REF:0000024
NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130
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St6galnac5
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
involved_in
ISO
(MGI:1346847|PMID:10521438)
RGD
PMID:10521438
MGI:1346847
NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
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St8sia5
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
involved_in
IDA
PMID:1606358
UniProt
PMID:1606358
RGD:21201272
NCBI chr18:70,736,632...70,802,537
Ensembl chr18:70,736,602...70,797,789
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Tm9sf2
transmembrane 9 superfamily member 2
involved_in
ISO
(PMID:30660999)
RGD
PMID:30660999
NCBI chr15:99,201,556...99,254,054
Ensembl chr15:99,201,489...99,254,049
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Ugt8
UDP glycosyltransferase 8
TAS
RGD
PMID:7521399
RGD:70050
NCBI chr 2:214,264,483...214,332,769
Ensembl chr 2:214,264,483...214,332,660
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B3galt1
Beta-1,3-galactosyltransferase 1
involved_in
ISO
(PMID:9582303)
RGD
PMID:9582303
NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313
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B3galt2
Beta-1,3-galactosyltransferase 2
involved_in
ISO
(PMID:9582303)
RGD
PMID:9582303
NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419
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B4galt3
beta-1,4-galactosyltransferase 3
involved_in
IBA ISO
PMID:21873635 (PMID:9405390)
RGD
PMID:9405390 PMID:21873635
RGD:13792537
NCBI chr13:83,691,378...83,697,448
Ensembl chr13:83,691,446...83,697,448
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Fa2h
fatty acid 2-hydroxylase
involved_in
IMP IEA ISS ISO
PMID:17901466 GO_REF:0000041 GO_REF:0000024 (MGI:3696647|PMID:15658937), (MGI:3826747|PMID:18815260)
UniProt RGD
PMID:15658937 PMID:18815260 PMID:17901466
GO_REF:0000024 GO_REF:0000041 MGI:3696647 MGI:3826747 , RGD:13825191
NCBI chr19:39,312,904...39,364,153
Ensembl chr19:39,312,906...39,364,153
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Gal3st1
galactose-3-O-sulfotransferase 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:1355015|PMID:10727929)
RGD
PMID:10727929 PMID:21873635
MGI:1355015 , RGD:13792537
NCBI chr14:78,868,049...78,886,402
Ensembl chr14:78,870,793...78,886,388
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Ugt8
UDP glycosyltransferase 8
involved_in
IDA IBA IEA
PMID:8713090 PMID:21873635 GO_REF:0000041
UniProt
PMID:8713090 PMID:21873635
GO_REF:0000041, RGD:39458006 , RGD:13792537
NCBI chr 2:214,264,483...214,332,769
Ensembl chr 2:214,264,483...214,332,660
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B3galt4
Beta-1,3-galactosyltransferase 4
involved_in
ISO
(PMID:9582303)
RGD
PMID:9582303
NCBI chr20:4,936,089...4,937,664
Ensembl chr20:4,931,768...4,938,315
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B4galnt1
beta-1,4-N-acetyl-galactosaminyl transferase 1
involved_in acts_upstream_of_or_within
IDA ISO ISS IBA
PMID:3140234 (PMID:1601877), (PMID:7487055), (PMID:7890749) GO_REF:0000024 PMID:21873635 (MGI:83232|PMID:8855236) MGI:2158349|MGI:96074 (MGI:1331265|PMID:10021458)
RGD UniProt
PMID:1601877 PMID:7487055 PMID:7890749 PMID:8855236 PMID:10021458 PMID:3140234 PMID:21873635 More...
GO_REF:0000024 MGI:1331265 MGI:83232 , RGD:21201261 , RGD:13792537
NCBI chr 7:62,988,429...62,996,190
Ensembl chr 7:62,988,930...62,996,190
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Rps18
ribosomal protein S18
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr20:4,931,427...4,935,538
Ensembl chr10:101,204,500...101,205,146 Ensembl chr20:101,204,500...101,205,146
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Rps18l1
ribosomal protein S18-like 1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr10:101,204,519...101,205,067
Ensembl chr10:101,204,500...101,205,146
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St6galnac3
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:242,129,755...242,645,120
Ensembl chr 2:242,129,763...242,645,133
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St6galnac4
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:15,872,230...15,885,250
Ensembl chr 3:15,872,532...15,885,243
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St6galnac5
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
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St6galnac6
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:1354410|PMID:10702226) PMID:21873635
RGD
PMID:10702226 PMID:21873635
MGI:1354410 , RGD:13792537
NCBI chr 3:15,894,278...15,907,502
Ensembl chr 3:15,885,968...15,907,496
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St8sia2
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
involved_in
ISO
(PMID:10766765)
RGD
PMID:10766765
NCBI chr 1:127,766,669...127,838,017
Ensembl chr 1:127,762,573...127,838,091
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St8sia3
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
involved_in
ISO
(PMID:10766765)
RGD
PMID:10766765
NCBI chr18:57,754,349...57,760,839
Ensembl chr18:57,754,347...57,760,839
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St8sia4
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
involved_in
ISO
(PMID:10766765)
RGD
PMID:10766765
NCBI chr 9:95,994,150...96,084,617
Ensembl chr 9:95,993,503...96,084,653
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St8sia6
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
involved_in
ISO
(MGI:2182536|PMID:11980897)
RGD
PMID:11980897
MGI:2182536
NCBI chr17:76,740,755...76,883,766
Ensembl chr17:76,745,224...76,884,299
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B4galt5
beta-1,4-galactosyltransferase 5
involved_in
ISO
(MGI:6196231|PMID:30114188)
RGD
PMID:30114188
MGI:6196231
NCBI chr 3:156,018,056...156,033,983
Ensembl chr 3:156,018,053...156,070,074
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B4galt6
beta-1,4-galactosyltransferase 6
involved_in
ISS ISO
GO_REF:0000024 (MGI:6196231|PMID:30114188)
UniProt RGD
PMID:30114188
GO_REF:0000024 MGI:6196231
NCBI chr18:11,958,382...12,015,247
Ensembl chr18:11,958,390...12,015,247
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St3gal1
ST3 beta-galactoside alpha-2,3-sialyltransferase 1
involved_in
ISO IBA
(PMID:8027041) PMID:21873635 (MGI:65558|PMID:8144500)
RGD
PMID:8027041 PMID:8144500 PMID:21873635
MGI:65558 , RGD:13792537
NCBI chr 7:98,845,270...98,913,409
Ensembl chr 7:98,845,270...98,913,236
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St3gal2
ST3 beta-galactoside alpha-2,3-sialyltransferase 2
involved_in
IBA ISO IEA IDA
PMID:21873635 (PMID:8920913) GO_REF:0000107 PMID:8144500 (MGI:6467685|PMID:22735313), (MGI:65558|PMID:8144500)
RGD Ensembl
PMID:8144500 PMID:8920913 PMID:22735313 PMID:21873635 PMID:8144500
GO_REF:0000107 MGI:6467685 MGI:65558 , RGD:13792537 , RGD:68307
NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
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St3gal3
ST3 beta-galactoside alpha-2,3-sialyltransferase 3
involved_in
IEA ISO
GO_REF:0000107 (MGI:6467685|PMID:22735313)
Ensembl RGD
PMID:22735313
GO_REF:0000107 MGI:6467685
NCBI chr 5:131,470,348...131,670,794
Ensembl chr 5:131,470,348...131,670,810
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A4galt
alpha 1,4-galactosyltransferase (P blood group)
acts_upstream_of_or_within
ISO
MGI:3624807|MGI:5445373 (MGI:3623723|PMID:16476743), (MGI:5445364|PMID:22875802)
RGD
PMID:16476743 PMID:22875802
MGI:3623723 MGI:5445364
NCBI chr 7:114,368,525...114,392,872
Ensembl chr 7:114,368,276...114,396,071
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St3gal2
ST3 beta-galactoside alpha-2,3-sialyltransferase 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:12716912)
UniProt Ensembl RGD
PMID:12716912
GO_REF:0000024 GO_REF:0000107
NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
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Fa2h
fatty acid 2-hydroxylase
involved_in
ISS ISO
GO_REF:0000024 (MGI:5285470|PMID:21628453)
UniProt RGD
PMID:21628453
GO_REF:0000024 MGI:5285470
NCBI chr19:39,312,904...39,364,153
Ensembl chr19:39,312,906...39,364,153
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Ugcg
UDP-glucose ceramide glucosyltransferase
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:8643456) PMID:21873635 (MGI:2180222|PMID:10430909), (MGI:3603060|PMID:16109770), (MGI:5448789|PMID:22851168), (MGI:5510915|PMID:23748427)
UniProt RGD
PMID:8643456 PMID:10430909 PMID:16109770 PMID:22851168 PMID:23748427 PMID:21873635 More...
GO_REF:0000024 MGI:2180222 MGI:3603060 MGI:5448789 MGI:5510915 , RGD:13792537
NCBI chr 5:74,032,978...74,065,701
Ensembl chr 5:74,032,978...74,065,393
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B4galt4
beta-1,4-galactosyltransferase 4
involved_in
ISO ISS
(PMID:9792633) GO_REF:0000024
RGD UniProt
PMID:9792633
GO_REF:0000024
NCBI chr11:61,995,807...62,021,751
Ensembl chr11:61,995,814...62,021,671
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B4galt6
beta-1,4-galactosyltransferase 6
involved_in
ISO
(PMID:10320813)
RGD
PMID:10320813
NCBI chr18:11,958,382...12,015,247
Ensembl chr18:11,958,390...12,015,247
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