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ONTOLOGY REPORT - ANNOTATIONS


Term:membrane lipid biosynthetic process
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Accession:GO:0046467 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane.
Synonyms:exact_synonym: membrane lipid anabolism;   membrane lipid biosynthesis;   membrane lipid formation;   membrane lipid synthesis



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ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agk acylglycerol kinase involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:15252046)
GO_Central
RGD
PMID:15252046 GO_REF:0000033 NCBI chr 4:70,081,550...70,160,642
Ensembl chr 4:69,114,269...69,193,934
JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:17403930)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17403930 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,361,898...54,373,776
Ensembl chr10:53,863,060...53,874,938
JBrowse link
G Aloxe3 arachidonate epidermal lipoxygenase 3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:22832496)
MGI:5496904 (PMID:22832496)
UniProt
RGD
PMID:22832496 GO_REF:0000024 NCBI chr10:54,329,224...54,353,167
Ensembl chr10:53,831,264...53,854,328
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 involved_in ISO
ISS
(PMID:12764132), (PMID:12815059)
GO_REF:0000024
RGD
UniProt
PMID:12764132 PMID:12815059 GO_REF:0000024 NCBI chr16:57,669,927...57,701,349
Ensembl chr16:50,966,229...51,008,233
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 involved_in ISO
IDA
(PMID:11278489), (PMID:17475390)
(PMID:21613224)
PMID:15123644
RGD PMID:11278489 PMID:17475390 PMID:21613224 PMID:15123644 PMID:11278489 RGD:13838793, RGD:13838803 NCBI chr 1:239,278,994...239,386,598
Ensembl chr 1:229,865,662...229,939,162
JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO
IBA
(PMID:12105227), (PMID:12869556), (PMID:15823095), (PMID:17548428), (PMID:18541923), (PMID:22922758), (PMID:24782409)
(PMID:16951403), (PMID:17977534), (PMID:21625621), (PMID:26620563), (PMID:30605666)
GO_REF:0000033
RGD
GO_Central
PMID:12105227 PMID:12869556 PMID:15823095 PMID:16951403 PMID:17548428 More... GO_REF:0000033 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Cers2 ceramide synthase 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17977534), (PMID:18165233), (PMID:29632068)
(PMID:19801672), (PMID:26620563), (PMID:38961186)
(PMID:15823095)
GO_REF:0000033
RGD
GO_Central
PMID:15823095 PMID:17977534 PMID:18165233 PMID:19801672 PMID:26620563 More... GO_REF:0000033 NCBI chr 2:185,579,511...185,587,789
Ensembl chr 2:182,890,493...182,933,314
JBrowse link
G Cers3 ceramide synthase 3 involved_in ISO
IBA
(PMID:17977534), (PMID:22038835), (PMID:23754960)
(PMID:22038835)
GO_REF:0000033
RGD
GO_Central
PMID:17977534 PMID:22038835 PMID:23754960 GO_REF:0000033 NCBI chr 1:129,728,136...129,833,182
Ensembl chr 1:120,318,212...120,422,902
JBrowse link
G Cers4 ceramide synthase 4 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17977534), (PMID:29632068)
(PMID:12912983), (PMID:15823095)
GO_REF:0000033
RGD
GO_Central
PMID:12912983 PMID:15823095 PMID:17977534 PMID:29632068 GO_REF:0000033 NCBI chr12:7,649,610...7,688,066
Ensembl chr12:2,851,784...2,886,828
JBrowse link
G Cers5 ceramide synthase 5 involved_in ISO
IBA
(PMID:16951403), (PMID:29632068)
(PMID:16100120), (PMID:17609214), (PMID:17977534), (PMID:38961186)
GO_REF:0000033
RGD
GO_Central
PMID:16100120 PMID:16951403 PMID:17609214 PMID:17977534 PMID:29632068 More... GO_REF:0000033 NCBI chr 7:132,738,834...132,776,920
Ensembl chr 7:130,859,990...130,897,947
JBrowse link
G Cers6 ceramide synthase 6 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17609214), (PMID:17977534)
(PMID:23760501), (PMID:26620563)
(PMID:15823095)
GO_REF:0000033
RGD
GO_Central
PMID:15823095 PMID:17609214 PMID:17977534 PMID:23760501 PMID:26620563 GO_REF:0000033 NCBI chr 3:74,038,520...74,287,544
Ensembl chr 3:53,630,959...53,876,848
JBrowse link
G Cyp4f39 cytochrome P450, family 4, subfamily f, polypeptide 39 involved_in ISO
IBA
(PMID:26056268)
GO_REF:0000033
RGD
GO_Central
PMID:26056268 GO_REF:0000033 NCBI chr 7:11,426,806...11,505,553
Ensembl chr 7:11,433,371...11,536,181
JBrowse link
G Degs1 delta(4)-desaturase, sphingolipid 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3529540 (PMID:22984457)
GO_Central
RGD
PMID:22984457 GO_REF:0000033 NCBI chr13:93,946,154...93,953,677
Ensembl chr13:93,946,157...93,953,664
JBrowse link
G Degs1l1 delta(4)-desaturase, sphingolipid 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,772,654...92,818,811
Ensembl chr13:92,772,649...92,818,574
JBrowse link
G Degs1l2 delta(4)-desaturase, sphingolipid 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,831,549...92,839,257
Ensembl chr13:92,831,537...92,839,246
JBrowse link
G Degs2 delta(4)-desaturase, sphingolipid 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:127,596,063...127,613,293
Ensembl chr 6:127,596,071...127,613,293
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 involved_in ISO (PMID:23689133) RGD PMID:23689133 NCBI chr 5:131,961,478...131,965,961
Ensembl chr 5:131,961,322...131,965,958
JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in ISO
ISS
(PMID:15337768)
(PMID:22517924)
GO_REF:0000024
RGD
UniProt
PMID:15337768 PMID:22517924 GO_REF:0000024 NCBI chr19:56,222,240...56,273,480
Ensembl chr19:39,312,906...39,364,153
JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in ISO (PMID:19279011) RGD PMID:19279011 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Mecr mitochondrial trans-2-enoyl-CoA reductase acts_upstream_of
involved_in
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:37653044)
UniProt
Ensembl
RGD
PMID:37653044 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:144,029,684...144,056,373
Ensembl chr 5:144,029,731...144,055,863
JBrowse link
G P2rx1 purinergic receptor P2X 1 acts_upstream_of_or_within ISO (PMID:16325464) RGD PMID:16325464 NCBI chr10:58,117,107...58,132,167
Ensembl chr10:57,618,586...57,633,623
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:16325464) RGD PMID:16325464 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Pnpla1 patatin-like phospholipase domain containing 1 involved_in ISO (PMID:27751867) RGD PMID:27751867 NCBI chr20:6,919,689...6,953,850
Ensembl chr20:6,917,931...6,952,375
JBrowse link
G Samd8 sterile alpha motif domain containing 8 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:19506037)
MGI:5749225 (PMID:25605874), (PMID:25667419)
GO_REF:0000033
RGD
GO_Central
PMID:19506037 PMID:25605874 PMID:25667419 GO_REF:0000033 NCBI chr15:2,512,104...2,562,368
Ensembl chr15:2,512,105...2,515,379
Ensembl chr15:2,512,105...2,515,379
JBrowse link
G Sgms1 sphingomyelin synthase 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:25605874)
GO_REF:0000033
RGD
GO_Central
PMID:25605874 GO_REF:0000033 NCBI chr 1:239,409,991...239,681,195
Ensembl chr 1:229,998,119...230,259,603
JBrowse link
G Sgms2 sphingomyelin synthase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:4818459 (PMID:25605874)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:25605874 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:222,567,661...222,641,804
Ensembl chr 2:219,893,572...219,967,546
JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in IMP
ISO
IBA
(PMID:35705808), (PMID:8706124)
GO_REF:0000033
(PMID:17303575), (PMID:18815062), (PMID:19279011), (PMID:20807762), (PMID:33163980), (PMID:8706124)
RGD
GO_Central
PMID:8706124 PMID:17303575 PMID:18815062 PMID:19279011 PMID:20807762 More... GO_REF:0000033, RGD:1601344 NCBI chr 1:169,304,772...169,308,615
Ensembl chr 1:159,892,859...159,896,794
JBrowse link
G Smpd2 sphingomyelin phosphodiesterase 2 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:12473648 GO_REF:0000033, RGD:1581395 NCBI chr20:46,568,627...46,571,741
Ensembl chr20:44,986,231...44,989,441
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 involved_in ISO
IBA
(PMID:16517606), (PMID:25180167)
(PMID:25180167)
GO_REF:0000033
RGD
GO_Central
PMID:16517606 PMID:25180167 GO_REF:0000033 NCBI chr11:96,866,805...96,890,520
Ensembl chr11:83,362,534...83,386,250
JBrowse link
G Smpd5 sphingomyelin phosphodiesterase 5 involved_in ISO (PMID:21183079) RGD PMID:21183079 NCBI chr 7:109,889,532...109,892,428
Ensembl chr 7:108,009,173...108,011,763
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:25691431)
MGI:3815115 (PMID:16216550)
GO_REF:0000033
RGD
GO_Central
PMID:16216550 PMID:25691431 GO_REF:0000033 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:25691431)
MGI:3815117 (PMID:16216550)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:16216550 PMID:25691431 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010
JBrowse link
G Sptssa serine palmitoyltransferase, small subunit A acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:25691431)
GO_REF:0000033
RGD
GO_Central
PMID:25691431 GO_REF:0000033 NCBI chr 6:77,879,931...77,891,344
Ensembl chr 6:72,144,714...72,156,214
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B acts_upstream_of_or_within ISO MGI:5689843 (PMID:26438849) RGD PMID:26438849 NCBI chr 2:154,133,728...154,162,127
Ensembl chr 2:154,133,733...154,163,120
JBrowse link
G Tlcd3b TLC domain containing 3B involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:23275342)
GO_Central
RGD
PMID:23275342 GO_REF:0000033 NCBI chr 1:190,851,582...190,870,278
Ensembl chr 1:181,422,830...181,439,743
JBrowse link
ceramide phosphoethanolamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Samd8 sterile alpha motif domain containing 8 acts_upstream_of_or_within ISO (PMID:25667419) RGD PMID:25667419 NCBI chr15:2,512,104...2,562,368
Ensembl chr15:2,512,105...2,515,379
Ensembl chr15:2,512,105...2,515,379
JBrowse link
G Sgms2 sphingomyelin synthase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:25667419)
Ensembl
RGD
PMID:25667419 GO_REF:0000107 NCBI chr 2:222,567,661...222,641,804
Ensembl chr 2:219,893,572...219,967,546
JBrowse link
galactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in ISO (PMID:9582303) RGD PMID:9582303 NCBI chr 3:72,661,410...73,234,447
Ensembl chr 3:52,253,618...52,825,313
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 involved_in ISO (PMID:9582303) RGD PMID:9582303 NCBI chr13:57,939,724...57,948,735
Ensembl chr13:55,389,406...55,398,419
JBrowse link
G B4galt3 beta-1,4-galactosyltransferase 3 involved_in ISO
IBA
IEA
(PMID:9405390)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:9405390 GO_REF:0000033 GO_REF:0000107 NCBI chr13:86,223,827...86,229,886
Ensembl chr13:83,691,446...83,697,448
JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in ISS
ISO
IMP
IEA
GO_REF:0000024
(PMID:15658937), (PMID:18815260)
PMID:17901466
GO_REF:0000041
UniProt
RGD
PMID:15658937 PMID:18815260 PMID:17901466 GO_REF:0000024 GO_REF:0000041, RGD:13825191 NCBI chr19:56,222,240...56,273,480
Ensembl chr19:39,312,906...39,364,153
JBrowse link
G Gal3st1 galactose-3-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:10727929)
GO_Central
RGD
PMID:10727929 GO_REF:0000033 NCBI chr14:78,868,049...78,886,402
Ensembl chr14:78,870,793...78,886,388
JBrowse link
G Ugt8 UDP glycosyltransferase 8 involved_in IDA
IBA
IEA
PMID:8713090
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
PMID:8713090 GO_REF:0000033 GO_REF:0000041, RGD:39458006 NCBI chr 2:216,938,884...217,007,167
Ensembl chr 2:214,264,483...214,332,660
JBrowse link
ganglioside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt4 Beta-1,3-galactosyltransferase 4 involved_in ISO
IEA
(PMID:9582303)
GO_REF:0000107
RGD
Ensembl
PMID:9582303 GO_REF:0000107 NCBI chr20:4,936,089...4,937,664
Ensembl chr20:4,931,768...4,938,315
JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
IDA
GO_REF:0000024
(PMID:8855236)
MGI:2158349|MGI:96074 (PMID:10021458)
GO_REF:0000033
GO_REF:0000107
PMID:3140234
(PMID:1601877), (PMID:7487055), (PMID:7890749)
UniProt
RGD
GO_Central
Ensembl
PMID:1601877 PMID:7487055 PMID:7890749 PMID:8855236 PMID:10021458 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:21201261 NCBI chr 7:62,988,429...62,996,190
Ensembl chr 7:62,988,930...62,996,190
JBrowse link
G Rps18 ribosomal protein S18 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:4,931,427...4,935,538
Ensembl chr20:4,931,768...4,938,315
JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:242,129,755...242,645,120
Ensembl chr 2:242,129,763...242,645,133
JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,872,230...15,885,250
Ensembl chr 3:15,872,532...15,885,243
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:244,398,604...244,571,100
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:10702226)
GO_Central
RGD
PMID:10702226 GO_REF:0000033 NCBI chr 3:15,894,275...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO (PMID:10766765) RGD PMID:10766765 NCBI chr 1:127,762,573...127,838,017
Ensembl chr 1:127,762,573...127,838,091
JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in ISO (PMID:10766765)
(PMID:7782326)
RGD PMID:7782326 PMID:10766765 NCBI chr18:57,754,349...57,760,839
Ensembl chr18:57,754,347...57,760,839
JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO (PMID:10766765) RGD PMID:10766765 NCBI chr 9:103,437,479...103,532,008
Ensembl chr 9:95,993,503...96,084,653
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in ISO (PMID:11980897) RGD PMID:11980897 NCBI chr17:76,740,755...76,884,178
Ensembl chr17:76,745,224...76,884,299
JBrowse link
ganglioside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt5 beta-1,4-galactosyltransferase 5 involved_in ISO (PMID:30114188) RGD PMID:30114188 NCBI chr 3:176,437,073...176,453,001
Ensembl chr 3:156,018,053...156,070,074
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:30114188)
UniProt
RGD
PMID:30114188 GO_REF:0000024 NCBI chr18:12,233,350...12,290,204
Ensembl chr18:11,958,390...12,015,247
JBrowse link
G C3h20orf173 similar to human chromosome 20 open reading frame 173 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,514,060...144,524,979
Ensembl chr 3:144,519,930...144,524,920
JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 involved_in ISO
IBA
(PMID:8027041)
(PMID:8144500)
GO_REF:0000033
RGD
GO_Central
PMID:8027041 PMID:8144500 GO_REF:0000033 NCBI chr 7:100,734,300...100,802,443
Ensembl chr 7:98,845,270...98,913,236
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IDA
ISO
IBA
IEA
PMID:8144500
(PMID:22735313), (PMID:8144500)
GO_REF:0000033
GO_REF:0000117
(PMID:8920913)
RGD
GO_Central
UniProt
PMID:8144500 PMID:8920913 PMID:22735313 PMID:8144500 GO_REF:0000033 GO_REF:0000117, RGD:68307 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:22735313)
Ensembl
RGD
PMID:22735313 GO_REF:0000107 NCBI chr 5:131,470,348...131,670,794
Ensembl chr 5:131,470,348...131,670,810
JBrowse link
globoside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A4galt alpha 1,4-galactosyltransferase acts_upstream_of_or_within ISO MGI:3624807|MGI:5445373 (PMID:16476743), (PMID:22875802) RGD PMID:16476743 PMID:22875802 NCBI chr 7:116,248,571...116,272,917
Ensembl chr 7:114,368,276...114,396,071
JBrowse link
globoside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA
ISS
(PMID:12716912)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12716912 GO_REF:0000024 GO_REF:0000107 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
glucosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fa2h fatty acid 2-hydroxylase involved_in ISS
ISO
GO_REF:0000024
(PMID:21628453)
UniProt
RGD
PMID:21628453 GO_REF:0000024 NCBI chr19:56,222,240...56,273,480
Ensembl chr19:39,312,906...39,364,153
JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase involved_in ISO
IBA
ISS
(PMID:8643456)
(PMID:10430909), (PMID:16109770), (PMID:22851168), (PMID:23748427)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:8643456 PMID:10430909 PMID:16109770 PMID:22851168 PMID:23748427 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:78,828,006...78,860,725
Ensembl chr 5:74,032,978...74,065,393
JBrowse link
glycolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gal3st2 galactose-3-O-sulfotransferase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:94,382,456...94,387,990
Ensembl chr 9:94,376,174...94,389,174
JBrowse link
G Gal3st3 galactose-3-O-sulfotransferase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:212,022,989...212,032,802
Ensembl chr 1:202,593,692...202,603,445
JBrowse link
G Gal3st4 galactose-3-O-sulfotransferase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:17,267,963...17,276,951
Ensembl chr12:17,267,963...17,276,833
JBrowse link
G Sccpdh saccharopine dehydrogenase (putative) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:91,400,120...91,421,875
Ensembl chr13:91,400,190...91,422,222
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO (PMID:9266697) RGD PMID:9266697 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO
IBA
(PMID:8288606)
GO_REF:0000033
RGD
GO_Central
PMID:8288606 GO_REF:0000033 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G St3gal6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:10206952)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:10206952 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:55,530,120...55,590,950
Ensembl chr11:42,077,621...42,121,776
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (PMID:11980897) RGD PMID:11980897 NCBI chr17:76,740,755...76,884,178
Ensembl chr17:76,745,224...76,884,299
JBrowse link
glycosphingolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A3galt2 alpha 1,3-galactosyltransferase 2 acts_upstream_of_or_within
involved_in
IDA
ISO
MGI:1347344|MGI:3512453 (PMID:22875802)
PMID:10854427
PMID:12626403
RGD PMID:22875802 PMID:10854427 PMID:10854427 PMID:12626403 RGD:1299594, RGD:1299594, RGD:632674 NCBI chr 5:141,101,329...141,113,760
Ensembl chr 5:141,107,983...141,115,641
JBrowse link
G A4galt alpha 1,4-galactosyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:116,248,571...116,272,917
Ensembl chr 7:114,368,276...114,396,071
JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 involved_in IDA PMID:1606358 UniProt PMID:1606358 RGD:21201272 NCBI chr 7:62,988,429...62,996,190
Ensembl chr 7:62,988,930...62,996,190
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:9593693 GO_REF:0000033, RGD:70807 NCBI chr18:12,233,350...12,290,204
Ensembl chr18:11,958,390...12,015,247
JBrowse link
G Fut4 fucosyltransferase 4 involved_in ISO
ISS
(PMID:29593094)
GO_REF:0000024
RGD
UniProt
PMID:29593094 GO_REF:0000024 NCBI chr 8:19,868,178...19,872,139
Ensembl chr 8:11,586,721...11,590,682
JBrowse link
G Fut4-ps1 fucosyltransferase 4, pseudogene 1 involved_in ISO (PMID:29593094) RGD PMID:29593094 NCBI chr 9:1,656,732...1,659,085 JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISO
ISS
(PMID:29593094)
GO_REF:0000024
RGD
UniProt
PMID:29593094 GO_REF:0000024 NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (PMID:10521438) RGD PMID:10521438 NCBI chr 2:244,398,604...244,571,100
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in IDA PMID:1606358 UniProt PMID:1606358 RGD:21201272 NCBI chr18:73,010,235...73,072,984
Ensembl chr18:70,736,602...70,797,789
JBrowse link
G Tm9sf2 transmembrane 9 superfamily member 2 involved_in ISO (PMID:30660999) RGD PMID:30660999 NCBI chr15:105,606,082...105,660,715
Ensembl chr15:99,201,489...99,254,049
JBrowse link
G Ugt8 UDP glycosyltransferase 8 TAS RGD PMID:7521399 RGD:70050 NCBI chr 2:216,938,884...217,007,167
Ensembl chr 2:214,264,483...214,332,660
JBrowse link
GPI anchor biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07038703.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:54,564,018...54,565,271 JBrowse link
G Cwh43 cell wall biogenesis 43 C-terminal homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:34,754,279...34,800,530
Ensembl chr14:34,754,289...34,800,814
JBrowse link
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:10835346), (PMID:9535917)
(PMID:9535917)
GO_REF:0000033
(PMID:9535917), (PMID:9724629)
RGD
GO_Central
PMID:9535917 PMID:9724629 PMID:10835346 GO_REF:0000033 NCBI chr 3:177,338,855...177,358,398
Ensembl chr 3:156,919,979...156,939,536
JBrowse link
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory involved_in
acts_upstream_of_or_within
TAS
IBA
IEA
ISO
IDA
GO_REF:0000033
GO_REF:0000107
(PMID:10835346), (PMID:16162815)
PMID:9724629
GO_Central
Ensembl
RGD
PMID:10835346 PMID:16162815 PMID:9724629 PMID:9724629 GO_REF:0000033 GO_REF:0000107, RGD:69827, RGD:69827 NCBI chr 3:15,855,952...15,858,867
Ensembl chr 3:15,856,182...15,869,165
Ensembl chr 3:15,856,182...15,869,165
JBrowse link
G Dpm3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory involved_in ISO
IBA
(PMID:10835346)
GO_REF:0000033
RGD
GO_Central
PMID:10835346 GO_REF:0000033 NCBI chr 2:176,974,290...176,974,805
Ensembl chr 2:174,676,363...174,677,668
Ensembl chr15:174,676,363...174,677,668
JBrowse link
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 TAS RGD PMID:10702226 RGD:1331364 NCBI chr 7:108,051,896...108,055,479
Ensembl chr 7:108,051,861...108,055,484
JBrowse link
G Mppe1 metallophosphoesterase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000043
(PMID:29374258)
UniProt
RGD
PMID:29374258 GO_REF:0000024 GO_REF:0000043 NCBI chr18:63,033,329...63,051,461
Ensembl chr18:60,763,419...60,781,553
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 involved_in IMP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:14734546 GO_REF:0000033, RGD:1303970 NCBI chr 9:63,470,023...63,538,772
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Pgap2 post-GPI attachment to proteins 2 involved_in IMP
ISO
ISS
IBA
IEA
PMID:16407401
(PMID:23561846), (PMID:29374258)
GO_REF:0000024
GO_REF:0000033
GO_REF:0000043
RGD
UniProt
GO_Central
PMID:23561846 PMID:29374258 PMID:16407401 PMID:29374258 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043, RGD:8553507, RGD:596936197 NCBI chr 1:166,003,593...166,030,088
Ensembl chr 1:156,591,615...156,618,114
JBrowse link
G Pgap3 post-GPI attachment to proteins phospholipase 3 involved_in ISO (PMID:29374258) RGD PMID:29374258 NCBI chr10:83,387,113...83,399,357
Ensembl chr10:83,387,113...83,398,628
JBrowse link
G Pgap4 post-GPI attachment to proteins GalNAc transferase 4 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:29374258)
UniProt
GO_Central
RGD
PMID:29374258 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:63,931,916...63,947,004
Ensembl chr 5:63,930,682...63,951,716
JBrowse link
G Piga phosphatidylinositol glycan anchor biosynthesis, class A involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000041
MGI:3652879 (PMID:8611683)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:8611683 GO_REF:0000033 GO_REF:0000041 NCBI chr  X:33,672,832...33,687,747
Ensembl chr  X:30,042,343...30,055,804
JBrowse link
G Pigb phosphatidylinositol glycan anchor biosynthesis, class B involved_in ISO
IBA
(PMID:8861954)
GO_REF:0000033
RGD
GO_Central
PMID:8861954 GO_REF:0000033 NCBI chr 8:73,751,756...73,775,679
Ensembl chr 8:73,751,798...73,775,679
JBrowse link
G Pigc phosphatidylinositol glycan anchor biosynthesis, class C involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000041
(PMID:16162815), (PMID:27694521)
UniProt
RGD
PMID:16162815 PMID:27694521 GO_REF:0000024 GO_REF:0000041 NCBI chr13:76,876,894...76,879,420
Ensembl chr13:74,296,854...74,346,211
JBrowse link
G Pigf phosphatidylinositol glycan anchor biosynthesis, class F involved_in ISO
IBA
IEA
(PMID:33386993)
GO_REF:0000033
(PMID:10781593)
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:10781593 PMID:33386993 GO_REF:0000033 GO_REF:0000041 NCBI chr 6:7,589,584...7,617,719
Ensembl chr 6:7,589,570...7,639,675
JBrowse link
G Pigg phosphatidylinositol glycan anchor biosynthesis, class G acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:15632136)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:15632136 GO_REF:0000033 GO_REF:0000041 NCBI chr14:1,404,911...1,433,199
Ensembl chr14:1,406,798...1,433,187
JBrowse link
G Pigh phosphatidylinositol glycan anchor biosynthesis, class H involved_in ISO
IBA
IEA
(PMID:16162815)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:16162815 GO_REF:0000033 GO_REF:0000041 NCBI chr 6:103,601,369...103,630,214
Ensembl chr 6:97,882,903...97,897,142
JBrowse link
G Pigk phosphatidylinositol glycan anchor biosynthesis, class K involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:241,630,021...241,715,493
Ensembl chr 2:241,630,053...241,716,134
JBrowse link
G Pigl phosphatidylinositol glycan anchor biosynthesis, class L involved_in IDA
IEA
ISO
PMID:10085243
GO_REF:0000041
(PMID:10085243)
UniProt
RGD
PMID:10085243 PMID:9188481 PMID:10085243 GO_REF:0000041, RGD:729509, RGD:401901217 NCBI chr10:47,142,160...47,199,892
Ensembl chr10:47,141,780...47,200,145
JBrowse link
G Pigm phosphatidylinositol glycan anchor biosynthesis, class M involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
RGD
PMID:11226175 GO_REF:0000033 GO_REF:0000041, RGD:70624 NCBI chr13:87,370,693...87,374,390
Ensembl chr13:84,838,175...84,843,381
JBrowse link
G Pign phosphatidylinositol glycan anchor biosynthesis, class N involved_in IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000041 NCBI chr13:21,659,092...21,812,932
Ensembl chr13:21,662,455...21,806,790
JBrowse link
G Pigo phosphatidylinositol glycan anchor biosynthesis, class O involved_in IEA
ISO
IBA
GO_REF:0000041
(PMID:10781593)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:10781593 GO_REF:0000033 GO_REF:0000041 NCBI chr 5:57,244,721...57,256,252
Ensembl chr 5:57,245,166...57,254,146
JBrowse link
G Pigp phosphatidylinositol glycan anchor biosynthesis, class P involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16162815), (PMID:28334793)
(PMID:10944123)
GO_REF:0000033
RGD
GO_Central
PMID:10944123 PMID:16162815 PMID:28334793 GO_REF:0000033 NCBI chr11:33,682,943...33,689,111
Ensembl chr11:33,682,948...33,689,321
JBrowse link
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16162815)
PomBase:SPBC30D10.11|SGD:S000003448 (PMID:10373468), (PMID:9729469)
GO_REF:0000033
RGD
GO_Central
PMID:9729469 PMID:10373468 PMID:16162815 GO_REF:0000033 NCBI chr10:14,942,571...14,958,584
Ensembl chr10:14,942,577...14,958,584
JBrowse link
G Pigs phosphatidylinositol glycan anchor biosynthesis, class S involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:63,222,611...63,237,190
Ensembl chr10:63,222,572...63,237,187
JBrowse link
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U involved_in ISO
IEA
(PMID:15034568)
GO_REF:0000041
RGD
UniProt
PMID:15034568 GO_REF:0000041 NCBI chr 3:143,784,831...143,881,268
Ensembl chr 3:143,784,832...143,880,807
JBrowse link
G Pigv phosphatidylinositol glycan anchor biosynthesis, class V involved_in ISO
IBA
IEA
UniProtKB:P38211 (PMID:15623507), (PMID:15720390)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:15623507 PMID:15720390 GO_REF:0000033 GO_REF:0000041 NCBI chr 5:145,889,642...145,901,533
Ensembl chr 5:145,889,646...145,901,533
JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000041 NCBI chr10:70,246,904...70,248,412
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Pigx phosphatidylinositol glycan anchor biosynthesis, class X involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr11:68,687,126...68,703,067
Ensembl chr11:68,687,093...68,703,472
JBrowse link
G Pigy phosphatidylinositol glycan anchor biosynthesis, class Y acts_upstream_of_or_within ISO (PMID:16162815) RGD PMID:16162815 NCBI chr 8:20,689,621...20,691,863
Ensembl chr 8:20,689,502...20,692,585
JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z involved_in ISO UniProtKB:Q04174 (PMID:15208306) RGD PMID:15208306 NCBI chr11:82,336,821...82,357,743 JBrowse link
G Slc30a5 solute carrier family 30 member 5 acts_upstream_of_positive_effect ISO (PMID:35525268) RGD PMID:35525268 NCBI chr 2:33,679,800...33,710,025
Ensembl chr 2:31,945,729...31,975,934
JBrowse link
lactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt4 beta-1,4-galactosyltransferase 4 involved_in ISO
ISS
(PMID:9792633)
GO_REF:0000024
RGD
UniProt
PMID:9792633 GO_REF:0000024 NCBI chr11:61,995,807...62,021,751
Ensembl chr11:61,995,814...62,021,671
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 involved_in ISO (PMID:10320813) RGD PMID:10320813 NCBI chr18:12,233,350...12,290,204
Ensembl chr18:11,958,390...12,015,247
JBrowse link
negative regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 acts_upstream_of_or_within ISO (PMID:25691431) RGD PMID:25691431 NCBI chr 9:55,735,081...55,745,287
Ensembl chr 9:48,237,572...48,253,211
JBrowse link
G Ormdl2 ORMDL sphingolipid biosynthesis regulator 2 acts_upstream_of_or_within ISO (PMID:25691431) RGD PMID:25691431 NCBI chr 7:1,832,368...1,835,501
Ensembl chr 7:1,246,479...1,250,907
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:25691431)
Ensembl
RGD
PMID:25691431 GO_REF:0000107 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:16118219)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16118219 GO_REF:0000024 GO_REF:0000107 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240
JBrowse link
negative regulation of sphingolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in ISO
IEA
IMP
(PMID:24201375)
GO_REF:0000107
RGD
Ensembl
PMID:24201375 PMID:24201375 GO_REF:0000107, RGD:14697729 NCBI chr 3:28,642,660...28,662,689
Ensembl chr 3:8,244,639...8,264,537
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:2176073|MGI:3587769 (PMID:25332431) RGD PMID:25332431 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
omega-hydroxyceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpla1 patatin-like phospholipase domain containing 1 involved_in ISO (PMID:28248318)
(PMID:28248300)
RGD PMID:28248300 PMID:28248318 NCBI chr20:6,919,689...6,953,850
Ensembl chr20:6,917,931...6,952,375
JBrowse link
phytosphingosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 involved_in ISO
IBA
(PMID:11356846), (PMID:20068046)
GO_REF:0000033
RGD
GO_Central
PMID:11356846 PMID:20068046 GO_REF:0000033 NCBI chr 1:161,915,397...162,017,802
Ensembl chr 1:152,504,186...152,606,591
JBrowse link
positive regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:19364818) RGD PMID:19364818 NCBI chr 2:237,222,730...237,225,689
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:21177474)
UniProt
RGD
PMID:21177474 GO_REF:0000024 NCBI chr10:104,740,763...104,745,760
Ensembl chr10:104,242,223...104,246,589
JBrowse link
G Pla2g6 phospholipase A2 group VI involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:18936091 GO_REF:0000033, RGD:6482750 NCBI chr 7:112,731,803...112,771,978
Ensembl chr 7:110,851,378...110,891,114
JBrowse link
G Prkcd protein kinase C, delta involved_in ISO
IEA
(PMID:19279011)
GO_REF:0000107
RGD
Ensembl
PMID:19279011 GO_REF:0000107 NCBI chr16:5,775,681...5,806,122
Ensembl chr16:5,769,215...5,799,352
JBrowse link
G Sirt3 sirtuin 3 involved_in ISO (PMID:26620563) RGD PMID:26620563 NCBI chr 1:205,371,703...205,394,145
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 IMP RGD PMID:20096352 RGD:10041064 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:16118219) RGD PMID:16118219 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Znf750 zinc finger protein 750 acts_upstream_of_or_within ISO MGI:7470773 (PMID:37115925) RGD PMID:37115925 NCBI chr10:107,270,926...107,279,904
Ensembl chr10:106,772,669...106,781,200
JBrowse link
regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000068509 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr17:11,942,344...11,942,538 JBrowse link
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 acts_upstream_of ISO MGI:1913862 (PMID:31880535) RGD PMID:31880535 NCBI chr 9:55,735,081...55,745,287
Ensembl chr 9:48,237,572...48,253,211
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 acts_upstream_of ISO MGI:2137691|MGI:2181669|MGI:6382064 (PMID:31880535) RGD PMID:31880535 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Paqr4 progestin and adipoQ receptor family member 4 involved_in ISO (PMID:32291319), (PMID:38961186) RGD PMID:32291319 PMID:38961186 NCBI chr10:12,758,970...12,762,649
Ensembl chr10:12,758,972...12,762,584
JBrowse link
G Prkcd protein kinase C, delta involved_in ISO
ISS
(PMID:17303575)
GO_REF:0000024
RGD
UniProt
PMID:17303575 GO_REF:0000024 NCBI chr16:5,775,681...5,806,122
Ensembl chr16:5,769,215...5,799,352
JBrowse link
G Samd8 sterile alpha motif domain containing 8 involved_in ISO (PMID:19506037) RGD PMID:19506037 NCBI chr15:2,512,104...2,562,368
Ensembl chr15:2,512,105...2,515,379
Ensembl chr15:2,512,105...2,515,379
JBrowse link
regulation of sphingolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 acts_upstream_of ISO MGI:1913862 (PMID:31880535) RGD PMID:31880535 NCBI chr 9:55,735,081...55,745,287
Ensembl chr 9:48,237,572...48,253,211
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 acts_upstream_of ISO MGI:2137691|MGI:2181669|MGI:2445707|MGI:6343506|MGI:6382064 (PMID:28275141), (PMID:31880535) RGD PMID:28275141 PMID:31880535 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:83,590,071...83,598,620
JBrowse link
sphinganine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO MGI:3815115 (PMID:19416652) RGD PMID:19416652 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9363775)
Ensembl
RGD
PMID:9363775 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
sphinganine-1-phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:10751414), (PMID:19729656) RGD PMID:10751414 PMID:19729656 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
sphingoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 acts_upstream_of_or_within ISO (PMID:19648650) RGD PMID:19648650 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010
JBrowse link
sphingolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer1 alkaline ceramidase 1 involved_in ISO (PMID:17713573) RGD PMID:17713573 NCBI chr 9:1,881,361...1,911,439
Ensembl chr 9:1,793,139...1,824,434
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of ISO MGI:2176073|MGI:3587769 (PMID:25332431) RGD PMID:25332431 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Cerkl CERK like autophagy regulator acts_upstream_of_or_within ISO MGI:5461515 (PMID:23501591) RGD PMID:23501591 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675
JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:12105227) RGD PMID:12105227 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Cers2 ceramide synthase 2 acts_upstream_of_or_within ISO (PMID:15823095) RGD PMID:15823095 NCBI chr 2:185,579,511...185,587,789
Ensembl chr 2:182,890,493...182,933,314
JBrowse link
G Cers3 ceramide synthase 3 acts_upstream_of_or_within ISO (PMID:16753040) RGD PMID:16753040 NCBI chr 1:129,728,136...129,833,182
Ensembl chr 1:120,318,212...120,422,902
JBrowse link
G Cers4 ceramide synthase 4 acts_upstream_of_or_within ISO (PMID:15823095) RGD PMID:15823095 NCBI chr12:7,649,610...7,688,066
Ensembl chr12:2,851,784...2,886,828
JBrowse link
G Cers5 ceramide synthase 5 acts_upstream_of_or_within ISO (PMID:15823095) RGD PMID:15823095 NCBI chr 7:132,738,834...132,776,920
Ensembl chr 7:130,859,990...130,897,947
JBrowse link
G Cers6 ceramide synthase 6 acts_upstream_of_or_within ISO (PMID:15823095) RGD PMID:15823095 NCBI chr 3:74,038,520...74,287,544
Ensembl chr 3:53,630,959...53,876,848
JBrowse link
G Degs2 delta(4)-desaturase, sphingolipid 2 acts_upstream_of_or_within ISO SGD:S000002705 (PMID:11937514) RGD PMID:11937514 NCBI chr 6:127,596,063...127,613,293
Ensembl chr 6:127,596,071...127,613,293
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 involved_in ISO
IBA
(PMID:20937905)
(PMID:20253178)
GO_REF:0000033
RGD
GO_Central
PMID:20253178 PMID:20937905 GO_REF:0000033 NCBI chr 5:131,961,478...131,965,961
Ensembl chr 5:131,961,322...131,965,958
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:23,750,350...23,790,601
Ensembl chr17:23,544,568...23,584,848
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:244,997,287...245,001,115
Ensembl chr 1:244,997,287...245,001,115
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:84,702,916...84,729,466
Ensembl chr 8:84,702,362...84,729,697
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:78,790,846...78,857,307
Ensembl chr 8:78,790,846...78,857,284
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:220,738,095...220,845,528
Ensembl chr 2:218,063,804...218,171,186
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:39,789,229...39,858,579
Ensembl chr 2:39,789,250...39,856,845
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in ISO
IBA
UniProtKB:P40857 (PMID:18554506)
GO_REF:0000033
RGD
GO_Central
PMID:18554506 GO_REF:0000033 NCBI chr17:81,992,284...82,014,676
Ensembl chr17:77,083,740...77,106,073
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 involved_in ISO
IBA
UniProtKB:P40857 (PMID:18554506)
GO_REF:0000033
RGD
GO_Central
PMID:18554506 GO_REF:0000033 NCBI chr11:65,667,671...65,762,903
Ensembl chr11:65,670,281...65,762,889
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:74,396,441...74,433,700
Ensembl chr 8:65,501,240...65,538,507
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:102,887,597...102,915,376
Ensembl chr 5:102,887,588...102,915,338
JBrowse link
G Kdsr 3-ketodihydrosphingosine reductase acts_upstream_of_or_within
involved_in
ISO
IBA
SGD:S000000469 (PMID:15328338)
GO_REF:0000033
(PMID:19141869)
RGD
GO_Central
PMID:15328338 PMID:19141869 GO_REF:0000033 NCBI chr13:23,374,101...23,408,779
Ensembl chr13:22,862,117...22,894,108
JBrowse link
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:55,735,081...55,745,287
Ensembl chr 9:48,237,572...48,253,211
JBrowse link
G Ormdl2 ORMDL sphingolipid biosynthesis regulator 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:1,832,368...1,835,501
Ensembl chr 7:1,246,479...1,250,907
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:28698261)
(PMID:25332431)
(PMID:26573920)
UniProt
RGD
PMID:25332431 PMID:26573920 PMID:28698261 GO_REF:0000024 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B acts_upstream_of_or_within ISO MGI:5689843 (PMID:26438849) RGD PMID:26438849 NCBI chr 2:154,133,728...154,162,127
Ensembl chr 2:154,133,733...154,163,120
JBrowse link
sphingomyelin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca8 ATP binding cassette subfamily A member 8 involved_in ISO (PMID:23560799) RGD PMID:23560799 NCBI chr10:95,416,984...95,490,647
Ensembl chr10:94,917,520...94,990,988
JBrowse link
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 acts_upstream_of ISO MGI:1913862 (PMID:31880535) RGD PMID:31880535 NCBI chr 9:55,735,081...55,745,287
Ensembl chr 9:48,237,572...48,253,211
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:2137691|MGI:2181669|MGI:6382064 (PMID:31880535)
Ensembl
RGD
PMID:31880535 GO_REF:0000107 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Osbp oxysterol binding protein involved_in ISO (PMID:12023275) RGD PMID:12023275 NCBI chr 1:218,313,455...218,343,263
Ensembl chr 1:208,887,895...208,918,506
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (PMID:25667419) RGD PMID:25667419 NCBI chr10:45,275,434...45,349,651
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Sgms1 sphingomyelin synthase 1 involved_in ISO
IBA
ISS
(PMID:14685263), (PMID:14976195), (PMID:17982138)
(PMID:27892528)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
HGNC-UCL
PMID:14685263 PMID:14976195 PMID:17982138 PMID:27892528 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:239,409,991...239,681,195
Ensembl chr 1:229,998,119...230,259,603
JBrowse link
G Sgms2 sphingomyelin synthase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(PMID:27892528)
(PMID:25667419)
GO_REF:0000033
(PMID:14685263), (PMID:17982138)
Ensembl
RGD
GO_Central
PMID:14685263 PMID:17982138 PMID:25667419 PMID:27892528 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:222,567,661...222,641,804
Ensembl chr 2:219,893,572...219,967,546
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within
involved_in
ISO MGI:3815115 (PMID:16216550)
(PMID:26301690)
RGD PMID:16216550 PMID:26301690 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3815117 (PMID:16216550)
Ensembl
RGD
PMID:16216550 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:12023275) RGD PMID:12023275 NCBI chr 9:112,624,791...112,654,731
Ensembl chr 9:105,177,907...105,207,847
JBrowse link
sphingosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 acts_upstream_of_positive_effect
involved_in
ISO
IEA
(PMID:26510981)
GO_REF:0000107
RGD
Ensembl
PMID:26510981 GO_REF:0000107 NCBI chr 3:28,642,660...28,662,689
Ensembl chr 3:8,244,639...8,264,537
JBrowse link
G Acer1 alkaline ceramidase 1 involved_in ISO
IBA
(PMID:17713573), (PMID:20207939), (PMID:20628055)
(PMID:27126290), (PMID:29056331)
GO_REF:0000033
RGD
GO_Central
PMID:17713573 PMID:20207939 PMID:20628055 PMID:27126290 PMID:29056331 GO_REF:0000033 NCBI chr 9:1,881,361...1,911,439
Ensembl chr 9:1,793,139...1,824,434
JBrowse link
G Acer2 alkaline ceramidase 2 involved_in ISO
IBA
(PMID:16940153), (PMID:20089856), (PMID:20207939), (PMID:20628055)
(PMID:29401619)
GO_REF:0000033
RGD
GO_Central
PMID:16940153 PMID:20089856 PMID:20207939 PMID:20628055 PMID:29401619 GO_REF:0000033 NCBI chr 5:106,437,773...106,488,572
Ensembl chr 5:101,391,885...101,442,614
JBrowse link
G Acer3 alkaline ceramidase 3 involved_in ISO (PMID:20068046), (PMID:20207939), (PMID:26792856)
(PMID:26474409)
RGD PMID:20068046 PMID:20207939 PMID:26474409 PMID:26792856 NCBI chr 1:161,915,397...162,017,802
Ensembl chr 1:152,504,186...152,606,591
JBrowse link
G Agk acylglycerol kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:70,081,550...70,160,642
Ensembl chr 4:69,114,269...69,193,934
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:9653654)
(PMID:10610716), (PMID:12815059)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9653654 PMID:10610716 PMID:12815059 GO_REF:0000024 GO_REF:0000107 NCBI chr16:57,669,927...57,701,349
Ensembl chr16:50,966,229...51,008,233
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 involved_in IDA
ISO
IBA
PMID:10488143
(PMID:10652340), (PMID:16126722), (PMID:16380386)
GO_REF:0000033
PMID:15123644
PMID:15217782
(PMID:30154232)
RGD
GO_Central
PMID:10652340 PMID:16126722 PMID:16380386 PMID:30154232 PMID:10488143 More... GO_REF:0000033, RGD:13838800, RGD:13838793, RGD:13838794 NCBI chr 1:239,278,994...239,386,598
Ensembl chr 1:229,865,662...229,939,162
JBrowse link
G ENSRNOG00000069695 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr14:25,729,638...25,730,194 JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in ISO (PMID:19279011) RGD PMID:19279011 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISO
IBA
IEA
UniProtKB:Q9NRA0 (PMID:23106337)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:23106337 GO_REF:0000033 GO_REF:0000107 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO UniProtKB:Q9NYA1 (PMID:23106337) RGD PMID:23106337 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:19416851), (PMID:33558761)
MGI:3815115 (PMID:16216550)
GO_REF:0000033
RGD
GO_Central
PMID:16216550 PMID:19416851 PMID:33558761 GO_REF:0000033 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:19416851), (PMID:33558761)
MGI:3815117 (PMID:16216550)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:16216550 PMID:19416851 PMID:33558761 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 involved_in ISO
IBA
(PMID:19416851)
GO_REF:0000033
RGD
GO_Central
PMID:19416851 GO_REF:0000033 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010
JBrowse link
G Sptssa serine palmitoyltransferase, small subunit A involved_in ISO (PMID:19416851), (PMID:33558761) RGD PMID:19416851 PMID:33558761 NCBI chr 6:77,879,931...77,891,344
Ensembl chr 6:72,144,714...72,156,214
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B involved_in ISO (PMID:19416851) RGD PMID:19416851 NCBI chr 2:154,133,728...154,162,127
Ensembl chr 2:154,133,733...154,163,120
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        biosynthetic process 8651
          lipid biosynthetic process 731
            membrane lipid biosynthetic process 141
              glycolipid biosynthetic process + 70
              sphingolipid biosynthetic process + 103
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          lipid metabolic process 1458
            membrane lipid metabolic process 208
              membrane lipid biosynthetic process 141
                glycolipid biosynthetic process + 70
                sphingolipid biosynthetic process + 103
paths to the root