St3gal2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2) - Rat Genome Database

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Gene: St3gal2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2) Rattus norvegicus
Analyze
Symbol: St3gal2
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 2
RGD ID: 68413
Description: Enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Involved in ganglioside biosynthetic process via lactosylceramide and protein glycosylation. Predicted to be located in Golgi membrane. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2); PARTICIPATES IN ganglioside metabolic pathway; globoside metabolic pathway; keratan sulfate biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha 2,3-ST 2; beta-galactoside alpha-2,3-sialyltransferase 2; CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2; gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase; gal-NAc6S; monosialoganglioside sialyltransferase; sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase); sialyltransferase 5; SIAT4-B; Siat4b; Siat5; ST3Gal II; ST3GALA.2; ST3GalII
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21938,888,851 - 38,939,874 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1938,923,999 - 38,939,869 (+)Ensembl
Rnor_6.01943,273,251 - 43,324,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,274,493 - 43,290,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,101,504 - 54,152,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,873,202 - 40,889,072 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11940,892,278 - 40,892,994 (-)NCBI
Celera1938,316,282 - 38,332,162 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning and expression of cDNA for a new type of Gal beta 1,3GalNAc alpha 2,3-sialyltransferase. Lee YC, etal., J Biol Chem 1994 Apr 1;269(13):10028-33.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9184827   PMID:9266697   PMID:21913655  


Genomics

Comparative Map Data
St3gal2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21938,888,851 - 38,939,874 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1938,923,999 - 38,939,869 (+)Ensembl
Rnor_6.01943,273,251 - 43,324,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,274,493 - 43,290,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,101,504 - 54,152,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,873,202 - 40,889,072 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11940,892,278 - 40,892,994 (-)NCBI
Celera1938,316,282 - 38,332,162 (+)NCBICelera
Cytogenetic Map19q12NCBI
ST3GAL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,375,977 - 70,439,100 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1670,375,977 - 70,439,237 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,409,880 - 70,473,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361668,970,839 - 69,030,492 (-)NCBINCBI36hg18NCBI36
Build 341668,972,809 - 69,030,492NCBI
Celera1655,055,306 - 55,114,849 (+)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1656,246,172 - 56,305,216 (-)NCBIHuRef
CHM1_11671,820,818 - 71,880,362 (-)NCBICHM1_1
T2T-CHM13v2.01676,187,004 - 76,250,128 (-)NCBI
St3gal2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,646,474 - 111,699,129 (+)NCBIGRCm39mm39
GRCm39 Ensembl8111,646,554 - 111,699,112 (+)Ensembl
GRCm388110,919,743 - 110,974,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,919,922 - 110,972,480 (+)EnsemblGRCm38mm10GRCm38
MGSCv378113,443,765 - 113,496,397 (+)NCBIGRCm37mm9NCBIm37
MGSCv368113,806,599 - 113,858,234 (+)NCBImm8
Celera8115,180,767 - 115,196,505 (+)NCBICelera
Cytogenetic Map8E1NCBI
St3gal2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,177,104 - 3,230,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,176,214 - 3,230,433 (-)NCBIChiLan1.0ChiLan1.0
ST3GAL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11670,218,738 - 70,240,162 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,218,748 - 70,240,162 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01654,577,578 - 54,637,626 (+)NCBIMhudiblu_PPA_v0panPan3
ST3GAL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,377,782 - 76,427,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,379,702 - 76,394,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,339,604 - 76,389,857 (-)NCBI
ROS_Cfam_1.0576,814,457 - 76,864,970 (-)NCBI
ROS_Cfam_1.0 Ensembl576,796,878 - 76,864,417 (-)Ensembl
UMICH_Zoey_3.1576,636,437 - 76,687,020 (-)NCBI
UNSW_CanFamBas_1.0576,459,670 - 76,510,167 (-)NCBI
UU_Cfam_GSD_1.0576,951,528 - 77,002,224 (-)NCBI
St3gal2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,385,195 - 36,439,669 (-)NCBI
SpeTri2.0NW_00493647523,149,452 - 23,203,919 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,386,443 - 13,419,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,402,336 - 13,456,495 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ST3GAL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,530,077 - 53,585,065 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl553,531,781 - 53,545,739 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604716,316,291 - 16,376,499 (-)NCBIVero_WHO_p1.0
St3gal2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,623,730 - 12,680,436 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474612,623,966 - 12,680,430 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BF387076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,938,311 - 38,938,468 (-)MAPPERmRatBN7.2
Rnor_6.01943,275,894 - 43,276,050NCBIRnor6.0
Rnor_5.01954,104,147 - 54,104,303UniSTSRnor5.0
RGSC_v3.41940,887,515 - 40,887,671UniSTSRGSC3.4
Celera1938,330,605 - 38,330,761UniSTS
RH 3.4 Map19474.0UniSTS
Cytogenetic Map19q12UniSTS
RH139813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,939,013 - 38,939,204 (-)MAPPERmRatBN7.2
Rnor_6.01943,275,158 - 43,275,348NCBIRnor6.0
Rnor_5.01954,103,411 - 54,103,601UniSTSRnor5.0
RGSC_v3.41940,888,217 - 40,888,407UniSTSRGSC3.4
Celera1938,331,307 - 38,331,497UniSTS
RH 3.4 Map19481.5UniSTS
Cytogenetic Map19q12UniSTS
RH140953  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,939,596 - 38,939,782 (-)MAPPERmRatBN7.2
Rnor_6.01943,274,580 - 43,274,765NCBIRnor6.0
Rnor_5.01954,102,833 - 54,103,018UniSTSRnor5.0
RGSC_v3.41940,888,800 - 40,888,985UniSTSRGSC3.4
Celera1938,331,890 - 38,332,075UniSTS
RH 3.4 Map19478.1UniSTS
RH 3.4 Map19477.8UniSTS
Cytogenetic Map19q12UniSTS
AA850466  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,939,565 - 38,939,782 (-)MAPPERmRatBN7.2
Rnor_6.01943,274,580 - 43,274,796NCBIRnor6.0
Rnor_5.01954,102,833 - 54,103,049UniSTSRnor5.0
RGSC_v3.41940,888,769 - 40,888,985UniSTSRGSC3.4
Celera1938,331,859 - 38,332,075UniSTS
RH 3.4 Map19477.9UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:870
Count of miRNA genes:291
Interacting mature miRNAs:384
Transcripts:ENSRNOT00000024248
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 37 30 22 11 22 8 11 74 35 34 11 8
Low 3 6 27 19 8 19 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024248   ⟹   ENSRNOP00000024248
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,923,999 - 38,939,869 (+)Ensembl
Rnor_6.0 Ensembl1943,274,493 - 43,290,363 (-)Ensembl
RefSeq Acc Id: NM_031695   ⟹   NP_113883
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,923,999 - 38,939,869 (+)NCBI
Rnor_6.01943,274,493 - 43,290,363 (-)NCBI
Rnor_5.01954,101,504 - 54,152,583 (-)NCBI
RGSC_v3.41940,873,202 - 40,889,072 (+)RGD
Celera1938,316,282 - 38,332,162 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255625   ⟹   XP_006255687
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,890,065 - 38,939,874 (+)NCBI
Rnor_6.01943,273,251 - 43,324,265 (-)NCBI
Rnor_5.01954,101,504 - 54,152,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006255626   ⟹   XP_006255688
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,890,065 - 38,939,874 (+)NCBI
Rnor_6.01943,273,251 - 43,324,265 (-)NCBI
Rnor_5.01954,101,504 - 54,152,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006255627   ⟹   XP_006255689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,890,065 - 38,939,874 (+)NCBI
Rnor_6.01943,273,251 - 43,324,265 (-)NCBI
Rnor_5.01954,101,504 - 54,152,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097961   ⟹   XP_038953889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,888,851 - 38,939,874 (+)NCBI
RefSeq Acc Id: XM_039097962   ⟹   XP_038953890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21938,924,274 - 38,939,874 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_113883   ⟸   NM_031695
- UniProtKB: Q11205 (UniProtKB/Swiss-Prot),   G3V8B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255689   ⟸   XM_006255627
- Peptide Label: isoform X1
- UniProtKB: G3V8B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255687   ⟸   XM_006255625
- Peptide Label: isoform X1
- UniProtKB: G3V8B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255688   ⟸   XM_006255626
- Peptide Label: isoform X1
- UniProtKB: G3V8B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024248   ⟸   ENSRNOT00000024248
RefSeq Acc Id: XP_038953889   ⟸   XM_039097961
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953890   ⟸   XM_039097962
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q11205-F1-model_v2 AlphaFold Q11205 1-350 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68413 AgrOrtholog
BioCyc Gene G2FUF-5671 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
Ensembl Genes ENSRNOG00000017932 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000024248 ENTREZGENE
  ENSRNOP00000024248.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024248 ENTREZGENE
  ENSRNOT00000024248.4 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64442 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 64442 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal2 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205044
UniProt G3V8B2 ENTREZGENE, UniProtKB/TrEMBL
  Q11205 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 St3gal2  ST3 beta-galactoside alpha-2,3-sialyltransferase 2  Siat4b  sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase)  Symbol and Name updated 1299863 APPROVED
2004-09-10 Siat4b  sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase)  Siat5  sialyltransferase 5  Symbol and Name updated 1299863 APPROVED
2002-06-10 Siat5  sialyltransferase 5      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mainly expressed in brain and liver 68307
gene_protein 350 amino acids 68307