Fa2h (fatty acid 2-hydroxylase) - Rat Genome Database

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Gene: Fa2h (fatty acid 2-hydroxylase) Rattus norvegicus
Analyze
Symbol: Fa2h
Name: fatty acid 2-hydroxylase
RGD ID: 1310347
Description: Enables fatty acid alpha-hydroxylase activity. Involved in galactosylceramide biosynthetic process. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 35. Orthologous to human FA2H (fatty acid 2-hydroxylase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fatty acid alpha-hydroxylase; LOC307855; RGD1310347; similar to RIKEN cDNA 5430401O09 gene; WD repeat domain 59; Wdr59
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21939,312,904 - 39,364,153 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1939,312,906 - 39,364,153 (-)Ensembl
Rnor_6.01943,545,380 - 43,596,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,545,378 - 43,596,801 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,355,770 - 54,407,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,268,120 - 41,319,682 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11941,275,527 - 41,460,325 (-)NCBI
Celera1938,700,320 - 38,749,569 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. FA2H is responsible for the formation of 2-hydroxy galactolipids in peripheral nervous system myelin. Maldonado EN, etal., J Lipid Res. 2008 Jan;49(1):153-61. doi: 10.1194/jlr.M700400-JLR200. Epub 2007 Sep 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15337768   PMID:15489334   PMID:15658937   PMID:15863841   PMID:16998236   PMID:17355976   PMID:18815260   PMID:21491498   PMID:21628453   PMID:22517924  


Genomics

Comparative Map Data
Fa2h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21939,312,904 - 39,364,153 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1939,312,906 - 39,364,153 (-)Ensembl
Rnor_6.01943,545,380 - 43,596,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,545,378 - 43,596,801 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,355,770 - 54,407,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,268,120 - 41,319,682 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11941,275,527 - 41,460,325 (-)NCBI
Celera1938,700,320 - 38,749,569 (-)NCBICelera
Cytogenetic Map19q12NCBI
FA2H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381674,712,969 - 74,774,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1674,712,955 - 74,774,831 (-)EnsemblGRCh38hg38GRCh38
GRCh371674,746,867 - 74,808,718 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,304,359 - 73,366,224 (-)NCBINCBI36hg18NCBI36
Build 341673,304,358 - 73,366,222NCBI
Celera1659,039,540 - 59,101,413 (-)NCBI
Cytogenetic Map16q23.1NCBI
HuRef1660,496,759 - 60,558,638 (-)NCBIHuRef
CHM1_11676,159,142 - 76,220,992 (-)NCBICHM1_1
T2T-CHM13v2.01680,759,709 - 80,821,550 (-)NCBI
Fa2h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,071,770 - 112,120,453 (-)NCBIGRCm39mm39
GRCm39 Ensembl8112,071,767 - 112,120,456 (-)Ensembl
GRCm388111,345,138 - 111,393,821 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,345,135 - 111,393,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,869,038 - 113,917,721 (-)NCBIGRCm37mm9NCBIm37
MGSCv368114,231,814 - 114,280,488 (-)NCBImm8
Celera8115,571,613 - 115,620,271 (-)NCBICelera
Cytogenetic Map8E1NCBI
Fa2h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,726,362 - 2,775,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,726,496 - 2,775,763 (+)NCBIChiLan1.0ChiLan1.0
FA2H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11674,632,161 - 74,693,710 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1674,632,179 - 74,693,710 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01655,278,769 - 55,340,332 (-)NCBIMhudiblu_PPA_v0panPan3
FA2H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,878,539 - 75,923,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,878,243 - 75,948,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,854,248 - 75,930,177 (+)NCBI
ROS_Cfam_1.0576,234,701 - 76,310,974 (+)NCBI
ROS_Cfam_1.0 Ensembl576,234,701 - 76,304,198 (+)Ensembl
UMICH_Zoey_3.1576,137,818 - 76,213,734 (+)NCBI
UNSW_CanFamBas_1.0575,960,777 - 76,036,528 (+)NCBI
UU_Cfam_GSD_1.0576,452,798 - 76,528,826 (+)NCBI
Fa2h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,913,903 - 35,964,152 (+)NCBI
SpeTri2.0NW_00493647523,625,023 - 23,675,211 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FA2H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,855,421 - 12,910,821 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,855,330 - 12,910,821 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,797,906 - 12,853,541 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FA2H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,930,289 - 52,993,751 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl552,930,833 - 52,992,499 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604715,810,775 - 15,873,476 (+)NCBIVero_WHO_p1.0
Fa2h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,125,506 - 12,186,671 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474612,125,709 - 12,186,254 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D19Rat69  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,348,870 - 39,349,071 (+)MAPPERmRatBN7.2
Rnor_6.01943,581,528 - 43,581,728NCBIRnor6.0
Rnor_5.01954,391,918 - 54,392,118UniSTSRnor5.0
RGSC_v3.41941,304,016 - 41,304,337RGDRGSC3.4
RGSC_v3.41941,304,084 - 41,304,284UniSTSRGSC3.4
RGSC_v3.11941,308,965 - 41,309,165RGD
Celera1938,734,265 - 38,734,461UniSTS
RH 3.4 Map19483.9RGD
RH 3.4 Map19483.9UniSTS
RH 2.0 Map19540.3RGD
SHRSP x BN Map1928.8998RGD
Cytogenetic Map19q12UniSTS
RH144444  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,313,287 - 39,313,528 (+)MAPPERmRatBN7.2
Rnor_6.01943,545,764 - 43,546,004NCBIRnor6.0
Rnor_5.01954,356,154 - 54,356,394UniSTSRnor5.0
RGSC_v3.41941,268,504 - 41,268,744UniSTSRGSC3.4
Celera1938,700,704 - 38,700,944UniSTS
RH 3.4 Map19485.8UniSTS
Cytogenetic Map19q12UniSTS
BE110252  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,320,478 - 39,320,636 (+)MAPPERmRatBN7.2
Rnor_6.01943,552,955 - 43,553,112NCBIRnor6.0
Rnor_5.01954,363,345 - 54,363,502UniSTSRnor5.0
RGSC_v3.41941,275,695 - 41,275,852UniSTSRGSC3.4
Celera1938,706,365 - 38,706,522UniSTS
RH 3.4 Map19485.4UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:511
Count of miRNA genes:244
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000025625
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 6 7
Low 1 6 6 6 4 4 18 23 14 1 4
Below cutoff 32 20 8 8 8 4 7 18 6 17 8 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025625   ⟹   ENSRNOP00000025625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,312,906 - 39,364,153 (-)Ensembl
Rnor_6.0 Ensembl1943,545,378 - 43,596,801 (-)Ensembl
RefSeq Acc Id: NM_001135583   ⟹   NP_001129055
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,312,904 - 39,364,153 (-)NCBI
Rnor_6.01943,545,380 - 43,596,788 (-)NCBI
Rnor_5.01954,355,770 - 54,407,097 (-)NCBI
RGSC_v3.41941,268,120 - 41,319,682 (-)RGD
Celera1938,700,320 - 38,749,569 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001129055 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABC71132 (Get FASTA)   NCBI Sequence Viewer  
  Q2LAM0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001129055   ⟸   NM_001135583
- UniProtKB: Q2LAM0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025625   ⟸   ENSRNOT00000025625
Protein Domains
Cytochrome b5 heme-binding   Fatty acid hydroxylase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2LAM0-F1-model_v2 AlphaFold Q2LAM0 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701147
Promoter ID:EPDNEW_R11671
Type:initiation region
Name:Fa2h_1
Description:fatty acid 2-hydroxylase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01943,596,785 - 43,596,845EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310347 AgrOrtholog
BioCyc Gene G2FUF-5653 BioCyc
BioCyc Pathway PWY66-388 [ceramide degradation by alpha-oxidation] BioCyc
Ensembl Genes ENSRNOG00000018950 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000025625 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025625 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.120.10 UniProtKB/Swiss-Prot
InterPro Cyt_B5-like_heme/steroid-bd UniProtKB/Swiss-Prot
  Cyt_B5-like_heme/steroid_sf UniProtKB/Swiss-Prot
  Cyt_B5_heme-BS UniProtKB/Swiss-Prot
  Fatty_acid_hydroxylase UniProtKB/Swiss-Prot
  Scs7 UniProtKB/Swiss-Prot
KEGG Report rno:307855 UniProtKB/Swiss-Prot
NCBI Gene 307855 ENTREZGENE
PANTHER PTHR12863 UniProtKB/Swiss-Prot
Pfam Cyt-b5 UniProtKB/Swiss-Prot
  FA_hydroxylase UniProtKB/Swiss-Prot
PhenoGen Fa2h PhenoGen
PIRSF IPC-B_HD UniProtKB/Swiss-Prot
PRINTS CYTOCHROMEB5 UniProtKB/Swiss-Prot
PROSITE CYTOCHROME_B5_1 UniProtKB/Swiss-Prot
  CYTOCHROME_B5_2 UniProtKB/Swiss-Prot
SMART Cyt-b5 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55856 UniProtKB/Swiss-Prot
UniProt FA2H_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Fa2h  fatty acid 2-hydroxylase  LOC688373  similar to fatty acid 2-hydroxylase  Data Merged 1643240 APPROVED
2007-12-12 Fa2h  fatty acid 2-hydroxylase  Wdr59  WD repeat domain 59  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-11-20 LOC688373  similar to fatty acid 2-hydroxylase      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Wdr59  WD repeat domain 59  RGD1310347  similar to RIKEN cDNA 5430401O09 gene  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1310347  similar to RIKEN cDNA 5430401O09 gene  RGD1310347_predicted  similar to RIKEN cDNA 5430401O09 gene (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-20 RGD1310347_predicted  similar to RIKEN cDNA 5430401O09 gene (predicted)  LOC307855_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307855_predicted  similar to RIKEN cDNA 5430401O09 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL