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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle transport
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Accession:GO:0048489 term browser browse the term
Definition:The directed movement of synaptic vesicles.
Synonyms:related_synonym: synaptic vesicle fission;   synaptic vesicle fusion;   synaptic vesicle trafficking
 alt_id: GO:0016181

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synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin dependent kinase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,478,934...6,483,848
Ensembl chrNW_004936527:6,478,982...6,483,866 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14622577) Ensembl
MGI		 PMID:14622577 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Dpysl2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chrNW_004936757:311,317...422,870
Ensembl chrNW_004936757:309,022...422,955 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:17418794) MGI PMID:17418794 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14622577) Ensembl
MGI		 PMID:14622577 GO_REF:0000107 NCBI chrNW_004936698:1,675,329...1,810,845
Ensembl chrNW_004936698:1,686,929...1,810,380 		JBrowse link
G LOC101968020 transmembrane protein 230 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:10,625,442...10,626,682 JBrowse link
G Mylk2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chrNW_004936485:18,782,890...18,795,942
Ensembl chrNW_004936485:18,782,887...18,795,948 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,990,367...2,995,935
Ensembl chrNW_004936596:2,989,804...2,998,305 		JBrowse link
G Snapin SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214 		JBrowse link
G Snca synuclein alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12388586) Ensembl
MGI		 PMID:12388586 GO_REF:0000107 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin involved_in ISO (PMID:24794856) UniProt PMID:24794856 NCBI chrNW_004936471:7,540,647...7,618,783 JBrowse link
G Synj1 synaptojanin 1 acts_upstream_of_or_within ISO (PMID:10535736) MGI PMID:10535736 NCBI chrNW_004936500:9,484,571...9,565,980
Ensembl chrNW_004936500:9,484,586...9,566,100 		JBrowse link
G Tmem230 transmembrane protein 230 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:13,772,093...13,779,201
Ensembl chrNW_004936485:13,772,106...13,779,201 		JBrowse link
G Tor1a torsin family 1 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,012,661...17,020,657
Ensembl chrNW_004936487:17,011,670...17,020,699 		JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379 		JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:17,301,969...17,336,962
Ensembl chrNW_004936483:17,298,291...17,337,578 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676 		JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936521:5,023,896...5,050,822 JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:503,615...525,361
Ensembl chrNW_004936785:508,848...525,391 		JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936742:1,007,684...1,088,272
Ensembl chrNW_004936742:1,007,973...1,088,394 		JBrowse link
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,613,474...15,660,862
Ensembl chrNW_004936483:15,613,474...15,660,838 		JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:186,422...190,870
Ensembl chrNW_004936646:186,031...190,915 		JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004939661:2,128...6,384 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544 		JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,618,330...18,619,512
Ensembl chrNW_004936477:18,618,499...18,619,140 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936552:1,787,687...1,926,516 JBrowse link
G Kif1a kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chrNW_004936745:911,651...976,878
Ensembl chrNW_004936745:911,709...974,199 		JBrowse link
G Madd MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chrNW_004936562:1,891,120...1,936,559
Ensembl chrNW_004936562:1,892,033...1,932,418 		JBrowse link
G Snapin SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214 		JBrowse link
G Trim46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26671463) Ensembl
MGI
TreeGrafter		 PMID:26671463 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:4,678,855...4,690,222
Ensembl chrNW_004936580:4,678,827...4,690,236 		JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004936599:3,310,873...3,316,575
Ensembl chrNW_004936599:3,310,872...3,316,573 		JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936587:4,806,537...4,906,301
Ensembl chrNW_004936587:4,806,113...4,906,411 		JBrowse link
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600
Ensembl chrNW_004936845:473,366...545,135 		JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 involved_in ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chrNW_004936595:567,267...574,051
Ensembl chrNW_004936595:567,219...574,059 		JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chrNW_004936498:13,785,638...13,885,931
Ensembl chrNW_004936498:13,784,886...13,886,167 		JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chrNW_004936864:117,510...119,612 JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO PMID:22539861 SynGO PMID:22539861 RGD:12050120 NCBI chrNW_004936475:21,983,248...22,063,133
Ensembl chrNW_004936475:21,983,248...22,063,181 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) SynGO PMID:20203623 NCBI chrNW_004936470:5,260,984...5,301,552
Ensembl chrNW_004936470:5,257,542...5,289,469 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676 		JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) SynGO PMID:29262337 NCBI chrNW_004936537:6,899,271...6,977,420
Ensembl chrNW_004936537:6,895,569...6,915,849 		JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,767,897...15,797,722
Ensembl chrNW_004936487:15,767,897...15,801,211 		JBrowse link
G Dnm3 dynamin 3 involved_in ISO (MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:5285027 NCBI chrNW_004936481:14,971,977...15,411,253
Ensembl chrNW_004936481:14,971,947...15,411,288 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:13,785,638...13,885,931
Ensembl chrNW_004936498:13,784,886...13,886,167 		JBrowse link
G Snap91 synaptosome associated protein 91 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936510:7,222,200...7,345,138
Ensembl chrNW_004936510:7,223,757...7,343,742 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15975
    cellular process 15076
      synaptic vesicle transport 45
        negative regulation of synaptic vesicle transport + 1
        positive regulation of synaptic vesicle transport + 2
        regulation of synaptic vesicle transport + 5
        synaptic vesicle budding + 10
        synaptic vesicle cytoskeletal transport + 21
Path 2
Term Annotations click to browse term
  biological_process 15975
    cellular process 15076
      cellular localization 3448
        establishment of localization in cell 2037
          establishment of vesicle localization 183
            synaptic vesicle transport 45
              negative regulation of synaptic vesicle transport + 1
              positive regulation of synaptic vesicle transport + 2
              regulation of synaptic vesicle transport + 5
              synaptic vesicle budding + 10
              synaptic vesicle cytoskeletal transport + 21
paths to the root