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pore complex assembly - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:pore complex assembly
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Accession:GO:0046931 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases.
Comment:See also the cellular component term 'pore complex ; GO:0046930'.
Synonyms:exact_synonym: pore biosynthesis;   pore formation
 related_synonym: pore complex biogenesis;   pore-forming toxin activity

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pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 involved_in ISO
IEA 		(PMID:30463011)
GO_REF:0000107 		RGD
Ensembl		 PMID:30463011 GO_REF:0000107 NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:71,345,837...71,477,889 		JBrowse link
G Afdn afadin, adherens junction formation factor involved_in ISO (PMID:30463011) RGD PMID:30463011 NCBI chr 1:58,041,065...58,170,505
Ensembl chr 1:53,905,373...54,034,216 		JBrowse link
G Ano6 anoctamin 6 involved_in ISO
IEA 		(PMID:25651887)
GO_REF:0000107 		RGD
Ensembl		 PMID:25651887 GO_REF:0000107 NCBI chr 7:126,933,919...127,113,588
Ensembl chr 7:126,933,936...127,113,589 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO MGI:4356167 (PMID:23527305) RGD PMID:23527305 NCBI chr 1:89,700,645...89,729,782
Ensembl chr 1:80,572,796...80,601,918 		JBrowse link
G Atp5mc1 ATP synthase membrane subunit c locus 1 IDA RGD PMID:11588987 RGD:13800751 NCBI chr10:81,520,762...81,523,735
Ensembl chr10:81,023,925...81,027,124
Ensembl chr10:81,023,925...81,027,124 		JBrowse link
G Atp5mc2 ATP synthase membrane subunit c locus 2 IDA RGD PMID:11588987 RGD:13800751 NCBI chr 7:135,669,847...135,680,839
Ensembl chr 7:133,791,342...133,799,733 		JBrowse link
G Atp5mc3 ATP synthase membrane subunit c locus 3 IDA RGD PMID:11588987 RGD:13800751 NCBI chr 3:79,218,014...79,220,664
Ensembl chr 3:58,810,535...58,814,279 		JBrowse link
G Bad BCL2-associated agonist of cell death involved_in ISO
ISS 		(PMID:19667065), (PMID:21081150)
GO_REF:0000024 		RGD
UniProt		 PMID:19667065 PMID:21081150 GO_REF:0000024 NCBI chr 1:213,562,719...213,572,034
Ensembl chr 1:204,131,501...204,142,823 		JBrowse link
G Gsdmd gasdermin D involved_in ISO (PMID:27383986) RGD PMID:27383986 NCBI chr 7:107,542,489...107,547,051
Ensembl chr 7:107,542,083...107,547,055 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within
involved_in 		IDA
ISO
IMP 		MGI:2386080|MGI:3042190 (PMID:12370338), (PMID:15937334), (PMID:16269410)
(PMID:25651887), (PMID:9038151) 		RGD PMID:9038151 PMID:12370338 PMID:15937334 PMID:16269410 PMID:25651887 More... RGD:1642715, RGD:1642715 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619 		JBrowse link
G Pdzd11 PDZ domain containing 11 involved_in ISO
IBA 		(PMID:30463011)
GO_REF:0000033 		RGD
GO_Central		 PMID:30463011 GO_REF:0000033 NCBI chr  X:65,718,689...65,721,742
Ensembl chr  X:65,704,067...65,721,642 		JBrowse link
G Plekha7 pleckstrin homology domain containing A7 involved_in ISO
IEA
IBA 		(PMID:30463011)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:30463011 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:179,798,856...179,982,155
Ensembl chr 1:170,365,135...170,547,775 		JBrowse link
G Tspan33 tetraspanin 33 involved_in ISO
IEA 		(PMID:30463011)
GO_REF:0000107 		RGD
Ensembl		 PMID:30463011 GO_REF:0000107 NCBI chr 4:58,305,378...58,330,013
Ensembl chr 4:58,305,437...58,328,940 		JBrowse link
nuclear pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahctf1 AT hook containing transcription factor 1 involved_in ISO (PMID:17098863) RGD PMID:17098863 NCBI chr13:91,481,936...91,536,391
Ensembl chr13:91,481,936...91,536,391 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:32706158) 		UniProt
RGD		 PMID:32706158 GO_REF:0000024 NCBI chr 2:118,812,287...118,865,813
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA
ISO 		GO_REF:0000107
(PMID:16600873) 		Ensembl
RGD		 PMID:16600873 GO_REF:0000107 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
G Nup107 nucleoporin 107 involved_in ISO
ISS 		(PMID:15229283)
GO_REF:0000024 		RGD
UniProt		 PMID:15229283 GO_REF:0000024 NCBI chr 7:53,353,740...53,398,345
Ensembl chr 7:53,353,743...53,398,370 		JBrowse link
G Nup153 nucleoporin 153 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:12802065), (PMID:15229283)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:12802065 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876 		JBrowse link
G Nup205 nucleoporin 205 involved_in ISO
IEA 		(PMID:15229283)
GO_REF:0000107 		RGD
Ensembl		 PMID:15229283 GO_REF:0000107 NCBI chr 4:63,854,934...63,920,852
Ensembl chr 4:63,854,783...63,920,844 		JBrowse link
G Nup93 nucleoporin 93 involved_in ISO
ISS
IEA 		(PMID:15229283), (PMID:26878725)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:15229283 PMID:26878725 GO_REF:0000024 GO_REF:0000107 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:15229283)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415 		JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:26906412)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:26906412 GO_REF:0000024 GO_REF:0000107 NCBI chr14:107,651,001...107,698,610
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO
IMP 		(PMID:12802065)
PMID:11839768 		RGD PMID:12802065 PMID:11839768 RGD:8553300 NCBI chr13:64,974,419...65,037,604
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component organization 6827
          cellular component assembly 3215
            protein-containing complex assembly 1616
              pore complex assembly 24
                nuclear pore complex assembly + 11
paths to the root