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ONTOLOGY REPORT - ANNOTATIONS

Term:protein localization to phagophore assembly site
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Accession:GO:0034497 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, the phagophore assembly site (PAS).
Synonyms:exact_synonym: protein localisation to phagophore assembly site;   protein localization to PAS
 narrow_synonym: protein localization to pre-autophagosomal structure


show annotations for term's descendants           Sort by:
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS		 (PMID:33773106)
GO_REF:0000024		 RGD
UniProt		 PMID:33773106 GO_REF:0000024 NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:159,974,201...159,980,336 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA		 (PMID:33773106)
GO_REF:0000107		 RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:171,621,507...172,202,724 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425)
GO_REF:0000107		 RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24098492)		 Ensembl
RGD		 PMID:24098492 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 ISO
ISS
IBA		 (PMID:28561066)
GO_REF:0000024
GO_REF:0000033
PR:Q8C0J2 (PMID:24954904)		 RGD
UniProt
GO_Central		 PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20075
    cellular process 19154
      cellular localization 3681
        cellular macromolecule localization 2727
          protein localization 2715
            protein localization to phagophore assembly site 16
Path 2
Term Annotations click to browse term
  biological_process 20075
    cellular process 19154
      metabolic process 11953
        catabolic process 2871
          autophagy 560
            macroautophagy 325
              autophagosome organization 132
                autophagosome assembly 123
                  protein localization to phagophore assembly site 16
paths to the root