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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide biosynthetic process
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Accession:GO:0009221 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide anabolism;   pyrimidine deoxyribonucleotide biosynthesis;   pyrimidine deoxyribonucleotide formation;   pyrimidine deoxyribonucleotide synthesis
 xref: MetaCyc:PWY0-166


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dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:192455 GO_REF:0000033 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635 		JBrowse link
G DTYMK deoxythymidylate kinase acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA
IDA		 (PMID:8845311)
(PMID:12614151)		 RGD
MGI
TreeGrafter
GO_Central
Ensembl
UniProt
InterPro		 PMID:220041 PMID:8845311 PMID:12614151 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:5133687 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in IDA (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,873...18,363,550 		JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA
IBA
IDA		 (PMID:11278511), (PMID:15093541), (PMID:8845352) RGD
TreeGrafter
GO_Central
InterPro
Ensembl
CAFA		 PMID:8845352 PMID:9894005 PMID:11278511 PMID:15093541 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635 		JBrowse link
G DTYMK deoxythymidylate kinase involved_in ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
Ensembl
UniProt		 PMID:220041 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 RGD:5133687 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944 		JBrowse link
G TBPL1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11861477) Ensembl
MGI		 PMID:11861477 GO_REF:0000107 NCBI chr 6:133,952,174...133,990,432
Ensembl chr 6:133,952,170...133,990,432 		JBrowse link
G TYMS thymidylate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866 		JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:192455 GO_REF:0000033 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635 		JBrowse link
G DTYMK deoxythymidylate kinase involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IBA
IEA		 RGD
GO_Central
UniProt
InterPro		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373 		JBrowse link
G LINC03106 long intergenic non-protein coding RNA 3106 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:26,066,675...26,118,408
Ensembl chr 9:26,066,675...26,118,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19613
    metabolic process 12438
      organonitrogen compound metabolic process 5576
        pyrimidine-containing compound metabolic process 95
          pyrimidine nucleotide metabolic process 57
            pyrimidine nucleotide biosynthetic process 35
              pyrimidine deoxyribonucleotide biosynthetic process 8
                dCDP biosynthetic process + 1
                dCMP biosynthetic process + 0
                dCTP biosynthetic process 0
                dTDP biosynthetic process 2
                dTMP biosynthetic process + 3
                dTTP biosynthetic process 4
                dUDP biosynthetic process 3
                dUMP biosynthetic process 2
                dUTP biosynthetic process 0
                pyrimidine deoxyribonucleotide salvage + 0
Path 2
Term Annotations click to browse term
  biological_process 19613
    metabolic process 12438
      cellular metabolic process 10624
        phosphorus metabolic process 1986
          phosphate-containing compound metabolic process 1955
            nucleoside phosphate metabolic process 666
              nucleotide metabolic process 660
                deoxyribonucleotide metabolic process 52
                  2'-deoxyribonucleotide metabolic process 50
                    pyrimidine deoxyribonucleotide metabolic process 25
                      pyrimidine deoxyribonucleotide biosynthetic process 8
                        dCDP biosynthetic process + 1
                        dCMP biosynthetic process + 0
                        dCTP biosynthetic process 0
                        dTDP biosynthetic process 2
                        dTMP biosynthetic process + 3
                        dTTP biosynthetic process 4
                        dUDP biosynthetic process 3
                        dUMP biosynthetic process 2
                        dUTP biosynthetic process 0
                        pyrimidine deoxyribonucleotide salvage + 0
paths to the root