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ONTOLOGY REPORT - ANNOTATIONS

Term:dTMP biosynthetic process
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Accession:GO:0006231 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
Synonyms:exact_synonym: dTMP anabolism;   dTMP biosynthesis;   dTMP formation;   dTMP synthesis


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dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:50,799,699...50,831,398
Ensembl chr16:50,787,875...50,831,186 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:10952785), (PMID:15322254)
GO_REF:0000107 		RGD
Ensembl		 PMID:10952785 PMID:15322254 GO_REF:0000107 NCBI chr 3:132,952,258...132,963,433
Ensembl chr 3:132,952,394...132,964,956 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:22235121)
(PMID:19513116) 		RGD PMID:19513116 PMID:22235121 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,960,434...45,997,326 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:65,244,247...65,249,567 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
ISO
IEA
IBA 		(PMID:11278511), (PMID:15093541), (PMID:8845352)
GO_REF:0000002
GO_REF:0000033
GO_REF:0000107
GO_REF:0000117 		RGD
InterPro
GO_Central
Ensembl
UniProt		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:9894005 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1545055 NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:120,763,386...120,776,097 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        pyrimidine-containing compound metabolic process 70
          pyrimidine nucleotide metabolic process 46
            pyrimidine deoxyribonucleotide metabolic process 21
              dTMP metabolic process 11
                dTMP biosynthetic process 5
                  dTMP salvage 0
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        primary metabolic process 10162
          nucleobase-containing compound metabolic process 5642
            nucleobase-containing small molecule metabolic process 693
              nucleoside phosphate metabolic process 660
                nucleotide metabolic process 503
                  deoxyribonucleotide metabolic process 46
                    2'-deoxyribonucleotide metabolic process 44
                      pyrimidine deoxyribonucleotide metabolic process 21
                        dTMP metabolic process 11
                          dTMP biosynthetic process 5
                            dTMP salvage 0
paths to the root