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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA repair
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Accession:GO:0006282 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA repair.

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regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G ACTR8 actin related protein 8 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr22:15,250,693...15,264,817
Ensembl chr22:15,252,097...15,264,706 		JBrowse link
G CDK9 cyclin dependent kinase 9 involved_in ISO (PMID:20493174) UniProt PMID:20493174 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G IER3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chr17:41,712,539...41,713,895
Ensembl chr17:41,712,528...41,714,126 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INO80B INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr14:32,819,491...32,822,519
Ensembl chr14:32,819,575...32,822,380 		JBrowse link
G INO80C INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr18:45,282,846...45,311,885
Ensembl chr18:45,282,812...45,311,870 		JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,770,873...91,864,797
Ensembl chr10:91,781,563...91,843,787 		JBrowse link
G INO80E INO80 complex subunit E involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 5:26,656,480...26,665,766
Ensembl chr 5:26,653,722...26,665,652 		JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,520...45,811,768
Ensembl chr11:45,798,495...45,811,771 		JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 1:120,935,175...120,968,053
Ensembl chr 1:120,936,104...120,968,005 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:41,867,776...42,006,845
Ensembl chr 9:41,869,061...42,005,789 		JBrowse link
G PHF13 PHD finger protein 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:125,122,118...125,133,013
Ensembl chr20:125,121,886...125,132,966 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:94,454,011...94,523,015
Ensembl chr  X:94,453,938...94,523,012 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SGF29 SAGA complex associated factor 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,399,760...26,439,616
Ensembl chr 5:26,399,677...26,439,530 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:23695662) MGI PMID:23695662 NCBI chr  X:45,820,114...45,834,727
Ensembl chr  X:45,822,453...45,834,917 		JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,782,622...46,790,461
Ensembl chr 6:46,781,471...46,790,804 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G USP1 ubiquitin specific peptidase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:70,602,300...70,617,280
Ensembl chr20:70,603,056...70,614,069 		JBrowse link
G YY1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in ISO (PMID:20725033) UniProt PMID:20725033 NCBI chr 1:10,247,260...10,271,026 JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:10,248,141...10,259,688 JBrowse link
G RNF169 ring finger protein 169 involved_in ISO (PMID:22492721), (PMID:22733822)
(PMID:22742833)		 UniProt PMID:22492721 PMID:22733822 PMID:22742833 NCBI chr 1:65,990,538...66,080,163 JBrowse link
G RNF169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (PMID:9461559) UniProt PMID:9461559 NCBI chr12:7,258,932...7,435,658
Ensembl chr12:7,256,648...7,312,734 		JBrowse link
G C1QBP complement C1q binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:4,843,202...4,850,639
Ensembl chr16:4,843,438...4,850,600 		JBrowse link
G CGAS cyclic GMP-AMP synthase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:28512243) UniProt PMID:28512243 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25520194) MGI
TreeGrafter		 PMID:25520194 GO_REF:0000118 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G HELB DNA helicase B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:61,972,061...62,008,532
Ensembl chr11:61,972,161...62,012,631 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in ISO (PMID:32832608) UniProt PMID:32832608 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KLHL15 kelch like family member 15 involved_in ISO (PMID:27561354), (PMID:35219381) UniProt PMID:27561354 PMID:35219381 NCBI chr  X:22,497,481...22,499,997
Ensembl chr  X:22,460,041...22,497,773
Ensembl chr  X:22,460,041...22,497,773 		JBrowse link
G KMT5A lysine methyltransferase 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:118,712,964...118,743,322
Ensembl chr11:118,723,029...118,743,325 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G MAGEF1 MAGE family member F1 involved_in ISO (PMID:29225034) UniProt PMID:29225034 NCBI chr15:4,706,254...4,707,932
Ensembl chr15:4,706,476...4,707,402 		JBrowse link
G PARPBP PARP1 binding protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:97,367,270...97,437,248
Ensembl chr11:97,370,965...97,437,967 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked involved_in ISO (PMID:28735897) UniProt PMID:28735897 NCBI chr  X:94,454,011...94,523,015
Ensembl chr  X:94,453,938...94,523,012 		JBrowse link
G RECQL5 RecQ like helicase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) Ensembl
MGI		 PMID:25520194 GO_REF:0000107 NCBI chr16:46,013,100...46,052,713
Ensembl chr16:46,013,092...46,056,167 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G RMI2 RecQ mediated genome instability 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:10,825,721...10,832,563
Ensembl chr 5:10,826,182...10,832,563 		JBrowse link
G SENP3 SUMO specific peptidase 3 involved_in ISO (PMID:32832608) UniProt PMID:32832608 NCBI chr16:6,939,231...6,948,831
Ensembl chr16:6,940,281...6,949,221 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:61,817,386...61,823,423 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) UniProt PMID:25294876 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in ISO (PMID:30612738) UniProt PMID:30612738 NCBI chr20:7,811,275...7,829,782 JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:7,811,220...7,821,203 JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein involved_in ISO (PMID:29042561) UniProt PMID:29042561 NCBI chr20:106,912,338...106,936,183
Ensembl chr20:106,912,431...106,939,583 		JBrowse link
G CYREN cell cycle regulator of NHEJ involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:19549901) UniProt PMID:19549901 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HSF1 heat shock transcription factor 1 involved_in ISO (PMID:26359349) UniProt PMID:26359349 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in ISO (PMID:24316220) UniProt PMID:24316220 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 involved_in ISO (PMID:28241136) UniProt PMID:28241136 NCBI chr 5:4,372,989...4,377,679
Ensembl chr 5:4,375,517...4,377,032 		JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) MGI PMID:19506022 NCBI chr22:45,757,414...45,763,690 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:64,650,781...64,844,078
Ensembl chr 1:64,647,177...64,844,097 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in ISO (PMID:17525340), (PMID:19261748) UniProt PMID:17525340 PMID:19261748 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G ACTR8 actin related protein 8 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr22:15,250,693...15,264,817
Ensembl chr22:15,252,097...15,264,706 		JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO (MGI:3698695|PMID:17121854) UniProt PMID:17121854 MGI:3698695 NCBI chr 1:58,407,323...58,431,551
Ensembl chr 1:58,421,847...58,431,144 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:19261748) UniProt PMID:17525340 PMID:19261748 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr16:71,755,598...71,760,611
Ensembl chr16:71,755,627...71,760,632 		JBrowse link
G CCDC117 coiled-coil domain containing 117 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:11,650,223...11,665,354
Ensembl chr19:11,650,243...11,666,009 		JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in ISO (PMID:16255782) UniProt PMID:16255782 NCBI chr 6:28,415,448...28,424,463 JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:28,421,000...28,421,452 JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:3,664,622...3,853,492
Ensembl chr21:3,666,339...3,853,239 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:7664335) UniProt PMID:7664335 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:16,717,300...17,001,893
Ensembl chr 2:16,717,291...17,001,703 		JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:104,720,487...104,840,902
Ensembl chr20:104,720,482...104,840,883 		JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:39,988,427...40,271,862
Ensembl chr13:40,001,261...40,272,592 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INO80B INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr14:32,819,491...32,822,519
Ensembl chr14:32,819,575...32,822,380 		JBrowse link
G INO80C INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr18:45,282,846...45,311,885
Ensembl chr18:45,282,812...45,311,870 		JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,770,873...91,864,797
Ensembl chr10:91,781,563...91,843,787 		JBrowse link
G INO80E INO80 complex subunit E involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 5:26,656,480...26,665,766
Ensembl chr 5:26,653,722...26,665,652 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,520...45,811,768
Ensembl chr11:45,798,495...45,811,771 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr 1:120,935,175...120,968,053
Ensembl chr 1:120,936,104...120,968,005 		JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in ISO (PMID:18819933) UniProt PMID:18819933 NCBI chr14:4,529,048...4,705,167
Ensembl chr14:4,612,225...4,705,419 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr 9:41,867,776...42,006,845
Ensembl chr 9:41,869,061...42,005,789 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:24790221) UniProt PMID:24790221 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,782,622...46,790,461
Ensembl chr 6:46,781,471...46,790,804 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,354,911...4,381,762
Ensembl chr11:4,355,053...4,381,273 		JBrowse link
G TMEM161A transmembrane protein 161A involved_in ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chr 6:17,586,202...17,604,835
Ensembl chr 6:17,584,268...17,601,206 		JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,820,188...50,826,376
Ensembl chr 6:50,819,833...50,827,010 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in IEA Ensembl GO_REF:0000107 Ensembl chr11:88,812,182...88,842,625 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,167,214...44,218,074 JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G YY1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:23797032) UniProt PMID:23797032 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G FAM178B family with sequence similarity 178 member B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:1,204,642...1,303,606
Ensembl chr14:1,203,885...1,317,560 		JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr25:77,187,572...77,585,773 JBrowse link
G FOXM1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,920,903...2,941,011
Ensembl chr11:2,920,663...2,940,823 		JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (MGI:6467697|PMID:29125140), (MGI:6716977|PMID:33115731) UniProt PMID:29125140 PMID:33115731 MGI:6467697 MGI:6716977 NCBI chr17:1,781,156...1,783,344
Ensembl chr17:1,781,026...1,783,111 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G OOEP oocyte expressed protein involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chr17:1,775,192...1,777,214
Ensembl chr17:1,775,955...1,776,982 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (MGI:7258357|PMID:31002797)
(PMID:23911928), (PMID:31995034), (PMID:32538779)		 UniProt PMID:23911928 PMID:31002797 PMID:31995034 PMID:32538779 MGI:7258357 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:88,497,787...88,573,966
Ensembl chr 4:88,499,373...88,576,983 		JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:93,919,373...93,983,499
Ensembl chr 9:93,931,456...93,980,297 		JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in ISO (PMID:23509288) UniProt PMID:23509288 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G SPIRE1 spire type actin nucleation factor 1 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr18:70,995,611...71,178,844
Ensembl chr18:70,995,390...71,178,538 		JBrowse link
G SPIRE2 spire type actin nucleation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,160,728...75,200,417
Ensembl chr 5:75,177,082...75,201,581 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in IEA Ensembl GO_REF:0000107 Ensembl chr11:88,812,182...88,842,625 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784 NCBI chr 8:44,167,214...44,218,074 JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:27715493) UniProt PMID:27715493 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,777,291...12,802,385 JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr28:16,195,676...16,197,161
Ensembl chr12:52,426,752...52,427,879 		JBrowse link
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR2 actin related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,740,432...41,780,045
Ensembl chr14:41,739,968...41,779,964 		JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:41,933,650...42,117,495
Ensembl chr11:42,028,083...42,118,892 		JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25520194) MGI PMID:25520194 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRD8 bromodomain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:40,808,706...40,848,696
Ensembl chr23:40,827,739...40,849,030 		JBrowse link
G CREBBP CREB binding protein involved_in ISO (PMID:38128537) UniProt PMID:38128537 NCBI chr 5:3,415,548...3,570,030
Ensembl chr 5:3,415,412...3,540,943 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:88,570,281...88,577,747
Ensembl chr20:88,570,341...88,577,306 		JBrowse link
G EPC1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,586,402...31,698,876
Ensembl chr 9:31,585,246...31,665,592 		JBrowse link
G EPC2 enhancer of polycomb homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:34,046,966...34,190,829
Ensembl chr10:34,047,028...34,191,956 		JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25520194) MGI
TreeGrafter		 PMID:25520194 GO_REF:0000118 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G FUS FUS RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,870,456...27,881,563
Ensembl chr 5:27,870,330...27,882,145 		JBrowse link
G HDGFL2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,200,031...4,230,941
Ensembl chr 6:4,200,077...4,230,731 		JBrowse link
G HELQ helicase, POLQ like involved_in ISO (MGI:5547892|PMID:24005329) UniProt PMID:24005329 MGI:5547892 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G ING3 inhibitor of growth family member 3 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr21:89,772,546...89,802,250
Ensembl chr21:89,772,528...89,802,244 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in ISO (PMID:27153538), (PMID:32832608) ComplexPortal PMID:27153538 PMID:32832608 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,781,156...1,783,344
Ensembl chr17:1,781,026...1,783,111 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LOC103239431 E1A-binding protein p400 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr11:127,335,371...127,461,564
Ensembl chr11:127,335,492...127,461,796 		JBrowse link
G MBTD1 mbt domain containing 1 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr16:42,085,106...42,169,856
Ensembl chr16:42,084,397...42,163,828 		JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:95,359,469...95,380,547
Ensembl chr20:95,359,515...95,379,259 		JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr26:4,500,848...4,520,830 JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:91,566,051...91,579,084
Ensembl chr  X:91,566,712...91,567,575 		JBrowse link
G MRGBP MRG domain binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,428,152...1,433,228
Ensembl chr 2:1,428,796...1,433,148 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G OOEP oocyte expressed protein involved_in ISO (MGI:6272426|PMID:29955025) UniProt PMID:29955025 MGI:6272426 NCBI chr17:1,775,192...1,777,214
Ensembl chr17:1,775,955...1,776,982 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098 PMID:30356214 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:42,864,857...42,930,315
Ensembl chr14:42,864,897...42,930,394 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in ISO (PMID:32832608) UniProt PMID:32832608 NCBI chr 6:3,768,100...3,797,377 JBrowse link
G PRMT1 protein arginine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,854,873...42,863,113
Ensembl chr 6:42,854,918...42,863,014 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RNF126 ring finger protein 126 involved_in ISO (PMID:36563124) UniProt PMID:36563124 NCBI chr 6:392,717...409,139 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,009,114...35,040,518
Ensembl chr 4:35,009,076...35,042,632 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G TRRAP transformation/transcription domain associated protein involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr28:14,154,962...14,289,110
Ensembl chr28:14,154,960...14,286,512 		JBrowse link
G VPS72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,498,627...12,513,838
Ensembl chr20:12,498,644...12,514,343 		JBrowse link
G WAS WASP actin nucleation promoting factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,809,418...45,817,165
Ensembl chr  X:45,809,189...45,817,667 		JBrowse link
G WDR48 WD repeat domain 48 involved_in ISO (PMID:27239033), (PMID:27463890) UniProt PMID:27239033 PMID:27463890 NCBI chr15:319,589...366,265
Ensembl chr15:319,810...366,246 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G YEATS4 YEATS domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,989,143...65,017,837
Ensembl chr11:64,989,152...65,017,938 		JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYREN cell cycle regulator of NHEJ involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G FH fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr25:78,576,931...78,599,998
Ensembl chr25:78,575,300...78,599,972 		JBrowse link
G KMT5B lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,308,565...6,367,272
Ensembl chr 1:6,308,742...6,367,393 		JBrowse link
G KMT5C lysine methyltransferase 5C involved_in ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr 6:47,942,100...47,950,364
Ensembl chr 6:47,944,197...47,949,693 		JBrowse link
G LOC103248265 lysine-specific demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) MGI PMID:24550317 NCBI chr 1:86,190,515...86,215,061
Ensembl chr 1:86,212,761...86,214,490 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:12032095) CACAO PMID:12032095 NCBI chr 6:43,018,763...43,025,506
Ensembl chr 6:43,018,807...43,025,292 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G SETMAR SET domain and mariner transposase fusion gene involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chr22:40,389,390...40,403,917
Ensembl chr22:40,389,485...40,403,898 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:61,817,386...61,823,423 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) UniProt PMID:25294876 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr15:70,266,267...70,332,079
Ensembl chr15:70,266,601...70,332,824 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25512560) UniProt PMID:25512560 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,735,091...32,741,200
Ensembl chr19:32,735,406...32,740,817 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G PRKCG protein kinase C gamma involved_in ISO (PMID:15808853) HGNC-UCL PMID:15808853 NCBI chr 6:46,574,560...46,600,329
Ensembl chr 6:46,575,439...46,600,364 		JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (MGI:5902647|PMID:28002403)
(PMID:28002403)		 UniProt PMID:28002403 MGI:5902647 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in ISO (PMID:28002403)
(MGI:5902647|PMID:28002403)		 UniProt PMID:28002403 MGI:5902647 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:34102106) UniProt PMID:34102106 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21653549) MGI
TreeGrafter		 PMID:21653549 GO_REF:0000118 NCBI chr17:53,879,902...53,919,533 JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:21639834) UniProt PMID:21639834 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,573,636...26,585,814
Ensembl chr 5:26,573,638...26,585,849 		JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 involved_in ISO (PMID:18614045) ComplexPortal PMID:18614045
G PPP4R3B protein phosphatase 4 regulatory subunit 3B involved_in ISO (PMID:18614045) ComplexPortal PMID:18614045 NCBI chr14:51,285,538...51,356,676
Ensembl chr14:51,285,994...51,355,142 		JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in ISO (PMID:15665856) UniProt PMID:15665856 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G FIGNL1 fidgetin like 1 involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr21:8,351,116...8,357,841
Ensembl chr21:8,354,641...8,356,665 		JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:24217620) MGI PMID:24217620 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,573,636...26,585,814
Ensembl chr 5:26,573,638...26,585,849 		JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 involved_in ISO (PMID:20154705) UniProt PMID:20154705
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:20154705) UniProt PMID:20154705 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) UniProt PMID:24843002 NCBI chr22:8,421,178...8,567,221
Ensembl chr22:8,420,960...8,567,201 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:19135889), (PMID:22753495) UniProt PMID:19135889 PMID:22753495 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G TERF2IP TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:61,133,028...61,142,713
Ensembl chr 5:61,133,173...61,141,896 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18283110) InterPro
TreeGrafter
MGI		 PMID:18283110 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:28,947,414...29,044,215
Ensembl chr 8:28,947,423...28,991,634 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998
G ZNF365 zinc finger protein 365 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:68,872,683...68,900,911
Ensembl chr 9:68,871,827...68,900,724 		JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr14:41,740,432...41,780,045
Ensembl chr14:41,739,968...41,779,964 		JBrowse link
G DEK DEK proto-oncogene acts_upstream_of_or_within ISO (PMID:21653549) MGI PMID:21653549 NCBI chr17:53,879,902...53,919,533 JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23241889) Ensembl
MGI		 PMID:23241889 GO_REF:0000107 NCBI chr27:46,787,325...46,896,898
Ensembl chr27:46,787,154...46,867,792 		JBrowse link
G POT1 protection of telomeres 1 involved_in ISO (PMID:29227966) CACAO PMID:29227966 NCBI chr21:93,572,139...93,688,374
Ensembl chr21:93,571,272...93,655,869 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998
G WAS WASP actin nucleation promoting factor NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:45,809,418...45,817,165
Ensembl chr  X:45,809,189...45,817,667 		JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in ISO (PMID:11017067) BHF-UCL PMID:11017067 NCBI chr16:55,874,043...55,906,739
Ensembl chr16:55,874,072...55,907,281 		JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19481525) Ensembl
MGI		 PMID:19481525 GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:43,508,888...43,548,411
Ensembl chr16:43,510,483...43,548,517 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19506022) MGI
Ensembl		 PMID:19506022 GO_REF:0000107 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:25378300) MGI PMID:25378300 NCBI chr25:3,350,798...3,405,040 JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17079
    regulation of biological process 11414
      regulation of cellular process 10820
        regulation of cellular response to stress 502
          regulation of DNA repair 181
            negative regulation of DNA repair + 41
            positive regulation of DNA repair + 120
            regulation of base-excision repair + 4
            regulation of double-strand break repair + 126
            regulation of error-prone translesion synthesis + 0
            regulation of mismatch repair + 4
            regulation of nucleotide-excision repair + 5
            regulation of single strand break repair + 3
Path 2
Term Annotations click to browse term
  biological_process 17079
    biological regulation 11800
      regulation of biological process 11414
        regulation of metabolic process 6548
          regulation of primary metabolic process 5538
            regulation of nucleobase-containing compound metabolic process 3829
              regulation of DNA metabolic process 464
                regulation of DNA repair 181
                  negative regulation of DNA repair + 41
                  positive regulation of DNA repair + 120
                  regulation of base-excision repair + 4
                  regulation of double-strand break repair + 126
                  regulation of error-prone translesion synthesis + 0
                  regulation of mismatch repair + 4
                  regulation of nucleotide-excision repair + 5
                  regulation of single strand break repair + 3
paths to the root