RNF169 (ring finger protein 169) - Rat Genome Database

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Gene: RNF169 (ring finger protein 169) Chlorocebus sabaeus
Analyze
Symbol: RNF169
Name: ring finger protein 169
RGD ID: 18575208
Description: ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); nucleosome binding (ortholog); ubiquitin-modified histone reader activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); negative regulation of double-strand break repair (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF169
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,990,538 - 66,080,163 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604359,731,765 - 59,825,611 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNF169
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,990,538 - 66,080,163 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604359,731,765 - 59,825,611 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RNF169
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,748,849 - 74,842,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,748,849 - 74,842,413 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,459,894 - 74,553,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,137,561 - 74,231,106 (+)NCBINCBI36Build 36hg18NCBI36
Celera1171,766,783 - 71,860,010 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1170,756,304 - 70,849,805 (+)NCBIHuRef
CHM1_11174,343,601 - 74,436,856 (+)NCBICHM1_1
T2T-CHM13v2.01174,678,364 - 74,771,928 (+)NCBIT2T-CHM13v2.0
Rnf169
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39799,569,461 - 99,630,537 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl799,569,461 - 99,629,655 (-)EnsemblGRCm39 Ensembl
GRCm38799,920,254 - 99,981,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl799,920,254 - 99,980,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv377107,068,764 - 107,128,968 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera7100,247,022 - 100,312,258 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.22NCBI
Rnf169
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,662,582 - 163,724,154 (-)NCBIGRCr8
mRatBN7.21154,250,462 - 154,311,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,254,473 - 154,311,653 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01164,917,069 - 164,978,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,922,080 - 164,977,633 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,119,356 - 171,180,334 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,289,186 - 157,313,978 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1152,335,857 - 152,397,398 (-)NCBICelera
Cytogenetic Map1q32NCBI
Rnf169
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541416,899,155 - 16,962,381 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541416,899,101 - 16,962,690 (-)NCBIChiLan1.0ChiLan1.0
RNF169
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2975,690,690 - 75,778,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11176,735,121 - 76,820,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01169,821,842 - 69,909,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11173,126,127 - 73,213,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1173,126,127 - 73,207,340 (+)Ensemblpanpan1.1panPan2
RNF169
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12123,574,478 - 23,655,305 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2123,579,370 - 23,655,290 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2123,339,276 - 23,420,502 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02123,776,256 - 23,857,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2123,779,418 - 23,857,897 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12123,574,383 - 23,655,483 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02123,771,964 - 23,852,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02123,688,567 - 23,769,927 (-)NCBIUU_Cfam_GSD_1.0
Rnf169
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,075,472 - 62,185,051 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364983,685,572 - 3,776,466 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364983,675,075 - 3,783,514 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF169
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl99,069,617 - 9,173,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.199,069,776 - 9,177,367 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2910,202,464 - 10,228,853 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rnf169
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248172,277,222 - 2,371,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248172,272,874 - 2,371,168 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008020153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008020153   ⟹   XP_008018344
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1165,990,538 - 66,080,163 (+)NCBI
Vero_WHO_p1.0NW_02366604359,731,765 - 59,825,611 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008018344 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008018344   ⟸   XM_008020153


Additional Information

Database Acc Id Source(s)
NCBI Gene RNF169 ENTREZGENE