FIGNL1 (fidgetin like 1) - Rat Genome Database

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Gene: FIGNL1 (fidgetin like 1) Chlorocebus sabaeus
Analyze
Symbol: FIGNL1
Name: fidgetin like 1
RGD ID: 18723197
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); microtubule severing ATPase activity (inferred); INVOLVED IN cellular response to ionizing radiation (ortholog); male meiotic nuclear division (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Kidney Neoplasms (ortholog); nicotine dependence (ortholog); FOUND IN cytoplasm (ortholog); nuclear chromosome (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fidgetin-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,351,116 - 8,357,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,354,641 - 8,356,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606213,923,269 - 13,930,007 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FIGNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,351,116 - 8,357,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,354,641 - 8,356,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606213,923,269 - 13,930,007 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FIGNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38750,444,133 - 50,450,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl750,444,128 - 50,450,390 (-)EnsemblGRCh38hg38GRCh38
GRCh37750,511,831 - 50,518,048 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36750,479,325 - 50,485,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 34750,286,040 - 50,292,257NCBI
Celera750,576,751 - 50,583,008 (-)NCBICelera
Cytogenetic Map7p12.2NCBI
HuRef750,361,796 - 50,368,053 (-)NCBIHuRef
CHM1_1750,514,123 - 50,520,380 (-)NCBICHM1_1
T2T-CHM13v2.0750,605,348 - 50,611,565 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2750,517,901 - 50,524,158 (-)NCBI
Fignl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391111,737,429 - 11,758,962 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1111,737,431 - 11,758,962 (-)EnsemblGRCm39 Ensembl
GRCm381111,800,288 - 11,808,983 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1111,787,431 - 11,808,962 (-)EnsemblGRCm38mm10GRCm38
MGSCv371111,700,291 - 11,708,965 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,700,291 - 11,708,935 (-)NCBIMGSCv36mm8
Celera1112,259,567 - 12,268,241 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map117.08NCBI
Fignl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81490,573,090 - 90,595,342 (-)NCBIGRCr8
mRatBN7.21486,368,670 - 86,381,728 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1486,368,675 - 86,377,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1490,774,815 - 90,783,162 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01492,019,146 - 92,027,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01488,486,779 - 88,495,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01491,895,902 - 91,904,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1491,895,909 - 91,904,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01491,679,879 - 91,688,446 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41492,685,445 - 92,693,967 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11492,704,589 - 92,713,112 (-)NCBI
Celera1485,370,247 - 85,378,768 (-)NCBICelera
Cytogenetic Map14q21NCBI
Fignl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554563,588,714 - 3,594,559 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554563,588,190 - 3,594,559 (+)NCBIChiLan1.0ChiLan1.0
FIGNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2655,323,098 - 55,329,366 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17103,647,823 - 103,654,089 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0751,080,052 - 51,093,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1751,330,922 - 51,337,201 (-)NCBIpanpan1.1PanPan1.1panPan2
FIGNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,788,063 - 1,792,900 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl181,788,801 - 1,790,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha181,779,396 - 1,786,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,846,815 - 1,853,537 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,846,410 - 1,852,892 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,819,812 - 1,826,451 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,816,264 - 1,822,220 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,953,038 - 1,959,746 (-)NCBIUU_Cfam_GSD_1.0
Fignl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118105,107,576 - 105,111,027 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366861,413,218 - 1,415,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366861,412,544 - 1,415,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FIGNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9136,484,216 - 136,488,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19136,484,217 - 136,488,262 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29150,064,983 - 150,068,988 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Fignl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247403,739,765 - 3,741,858 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247403,737,482 - 3,748,851 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 10
Low 36 20 50
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019685   ⟹   ENSCSAP00000019094
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl218,354,641 - 8,356,665 (+)Ensembl
RefSeq Acc Id: XM_007981325   ⟹   XP_007979516
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1218,351,116 - 8,357,841 (+)NCBI
Vero_WHO_p1.0NW_02366606213,923,269 - 13,930,007 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007979516 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019094.1
Reference Protein Sequences
RefSeq Acc Id: XP_007979516   ⟸   XM_007981325
- UniProtKB: A0A0D9SE05 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000019094   ⟸   ENSCSAT00000019685


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019595 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019685.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  FIGNL1_ATPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Vps4_C UniProtKB/TrEMBL
KEGG Report csab:103226077 UniProtKB/TrEMBL
NCBI Gene FIGNL1 ENTREZGENE
PANTHER AAA DOMAIN-CONTAINING UniProtKB/TrEMBL
  DYNEIN REGULATORY COMPLEX PROTEIN 11-RELATED UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Vps4_C UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9SE05 ENTREZGENE, UniProtKB/TrEMBL