ARID2 (AT-rich interaction domain 2) - Rat Genome Database

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Pathways
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Gene: ARID2 (AT-rich interaction domain 2) Chlorocebus sabaeus
Analyze
Symbol: ARID2
Name: AT-rich interaction domain 2
RGD ID: 18667089
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN cardiac muscle cell proliferation (ortholog); circulatory system development (ortholog); coronary artery morphogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); Coffin-Siris syndrome 6 (ortholog); FOUND IN nucleoplasm (inferred); plasma membrane (inferred); RSC-type complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11141,933,650 - 42,117,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,028,083 - 42,118,892 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037204,323,064 - 204,512,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11141,933,650 - 42,117,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,028,083 - 42,118,892 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037204,323,064 - 204,512,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381245,729,706 - 45,908,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1245,729,706 - 45,908,040 (+)EnsemblGRCh38hg38GRCh38
GRCh371246,123,489 - 46,301,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,409,887 - 44,588,086 (+)NCBINCBI36Build 36hg18NCBI36
Celera1244,920,557 - 45,099,159 (+)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1243,152,842 - 43,332,608 (+)NCBIHuRef
CHM1_11246,088,579 - 46,266,707 (+)NCBICHM1_1
T2T-CHM13v2.01245,688,334 - 45,867,621 (+)NCBIT2T-CHM13v2.0
Arid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,185,403 - 96,303,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,185,399 - 96,302,873 (+)EnsemblGRCm39 Ensembl
GRCm381596,287,522 - 96,405,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,287,518 - 96,404,992 (+)EnsemblGRCm38mm10GRCm38
MGSCv371596,117,953 - 96,235,894 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,197,538 - 96,230,331 (+)NCBIMGSCv36mm8
Celera1598,438,688 - 98,556,626 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.37NCBI
Arid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,326,371 - 129,443,813 (+)NCBIGRCr8
mRatBN7.27127,447,192 - 127,565,987 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,447,278 - 127,563,512 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07137,680,564 - 137,798,329 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,680,530 - 137,795,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,312,585 - 137,430,353 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47134,959,992 - 135,077,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,036,399 - 135,153,718 (+)NCBI
Celera7123,951,414 - 124,071,020 (+)NCBICelera
Cytogenetic Map7q35NCBI
Arid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555004,998,555 - 5,175,776 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555004,998,555 - 5,177,180 (+)NCBIChiLan1.0ChiLan1.0
ARID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21048,261,225 - 48,443,133 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11248,257,983 - 48,439,555 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,823,236 - 43,004,465 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,692,717 - 43,871,652 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,692,914 - 43,871,564 (-)Ensemblpanpan1.1panPan2
ARID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,411,092 - 8,579,735 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,412,377 - 8,579,882 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2737,733,310 - 37,902,134 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,605,853 - 8,775,028 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,605,848 - 8,775,217 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,413,511 - 8,582,264 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,452,603 - 8,621,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02737,971,938 - 38,141,085 (+)NCBIUU_Cfam_GSD_1.0
Arid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,966,896 - 69,144,185 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,020,966 - 4,196,459 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,020,303 - 4,199,390 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl576,636,967 - 76,797,043 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1576,637,385 - 76,800,155 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2579,655,352 - 79,725,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Arid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248166,332,612 - 6,521,535 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248166,329,888 - 6,521,535 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 5 32
Low 16 15 28
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000004790   ⟹   ENSCSAP00000003035
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1142,028,083 - 42,118,892 (+)Ensembl
RefSeq Acc Id: XM_037997235   ⟹   XP_037853163
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037204,323,064 - 204,512,703 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037853163 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003035.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000003035   ⟸   ENSCSAT00000004790
RefSeq Acc Id: XP_037853163   ⟸   XM_037997235
- UniProtKB: A0A0D9R346 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004790.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DNA-bd_RFX UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103238193 UniProtKB/TrEMBL
NCBI Gene ARID2 ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam RFX_DNA_binding UniProtKB/TrEMBL
PROSITE RFX_DBD UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9R346 ENTREZGENE, UniProtKB/TrEMBL